BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00006730
         (664 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002285419.1| PREDICTED: uncharacterized protein LOC100257...    93   5e-17
emb|CAN68016.1| hypothetical protein VITISV_025150 [Vitis vinifera]    92   9e-17
ref|XP_002528377.1| Heterogeneous nuclear ribonucleoprotein 27C,...    89   1e-15
ref|XP_003556346.1| PREDICTED: RNA-binding protein Musashi homol...    78   2e-12
ref|XP_002315580.1| predicted protein [Populus trichocarpa] gi|2...    76   7e-12

>ref|XP_002285419.1| PREDICTED: uncharacterized protein LOC100257917 [Vitis vinifera]
          Length = 464

 Score = 92.8 bits (229), Expect = 5e-17
 Identities = 62/161 (38%), Positives = 75/161 (46%), Gaps = 45/161 (27%)
 Frame = +3

Query: 6   YGNDPPGS-KSSWSGQAPSGYGSAPYG----------------GTGFAAPAQSPSGTAAY 134
           Y   PPG+ +SSW+ QAPSGYG   YG                GTG A+  QSPSG A Y
Sbjct: 297 YAGGPPGAPRSSWNSQAPSGYGGVGYGNAASWGSSAGGGAGSGGTGSASSGQSPSGAAGY 356

Query: 135 GNKDFXXXXXXXXXXENQN---------------SYNAGRG------------GHANNSG 233
           GN+ +             N               + NAG G            G+ + +G
Sbjct: 357 GNQSYGYGGYGGSEGSYANPTGYGAVGGRTGSGPNSNAGGGELQGSGGGYMGGGYGDANG 416

Query: 234 NSVYTSTAWSSDPSQ-NGNYGTAQASGAPAGQVGYSGGYGA 353
           NS Y + AW SDPSQ +GNYG AQ +G   GQVGY GGY A
Sbjct: 417 NSGYGNAAWKSDPSQASGNYG-AQTNGPHGGQVGYGGGYSA 456


>emb|CAN68016.1| hypothetical protein VITISV_025150 [Vitis vinifera]
          Length = 464

 Score = 92.0 bits (227), Expect = 9e-17
 Identities = 61/161 (37%), Positives = 76/161 (47%), Gaps = 45/161 (27%)
 Frame = +3

Query: 6   YGNDPPGS-KSSWSGQAPSGYGSAPYG----------------GTGFAAPAQSPSGTAAY 134
           Y   PPG+ +SSW+ QAPSGYG+  YG                GTG A+  QSPSG A Y
Sbjct: 297 YAGGPPGAPRSSWNSQAPSGYGAVGYGNAASWGPSAGGGAGSGGTGSASSGQSPSGAAGY 356

Query: 135 GNKDFXXXXXXXXXXENQN---------------SYNAGRG------------GHANNSG 233
           GN+ +             N               + NAG G            G+ + +G
Sbjct: 357 GNQSYGYGGYGGSEGSYANPTGYGAVGGRTGSGPNSNAGGGELQGSGGGYMGGGYGDANG 416

Query: 234 NSVYTSTAWSSDPSQ-NGNYGTAQASGAPAGQVGYSGGYGA 353
           NS Y + +W SDPSQ +GNYG AQ +G   GQVGY GGY A
Sbjct: 417 NSGYGNASWKSDPSQASGNYG-AQTNGPHGGQVGYGGGYSA 456


>ref|XP_002528377.1| Heterogeneous nuclear ribonucleoprotein 27C, putative [Ricinus
           communis] gi|223532245|gb|EEF34049.1| Heterogeneous
           nuclear ribonucleoprotein 27C, putative [Ricinus
           communis]
          Length = 470

 Score = 88.6 bits (218), Expect = 1e-15
 Identities = 63/159 (39%), Positives = 74/159 (46%), Gaps = 44/159 (27%)
 Frame = +3

Query: 6   YGNDPPGS-KSSWSGQAPSGYGSAPYG--------------GTGFAAPAQSPSGTAAYGN 140
           Y + PPG+ +SSWS QAPSGYG+  YG              G G A   QSPSG+A YGN
Sbjct: 303 YASGPPGAPRSSWSSQAPSGYGAMGYGNAASWGANTGAGSGGPGSAPAGQSPSGSAGYGN 362

Query: 141 KDFXXXXXXXXXXE--NQNSYNA--GRGGHANNS------------------------GN 236
           + +             N   Y+A  GR G A NS                        GN
Sbjct: 363 QGYGYGSYGGNDGSYGNPAGYSAVGGRSGGAPNSNVGAGGELQGSGGGYMGSDYGDANGN 422

Query: 237 SVYTSTAWSSDPSQ-NGNYGTAQASGAPAGQVGYSGGYG 350
             Y +  W SDPSQ +GNYGT QA+G    QVGY GGYG
Sbjct: 423 PGYGTAGWRSDPSQASGNYGT-QANGPHGAQVGYGGGYG 460


>ref|XP_003556346.1| PREDICTED: RNA-binding protein Musashi homolog 2-like [Glycine max]
          Length = 476

 Score = 77.8 bits (190), Expect = 2e-12
 Identities = 56/167 (33%), Positives = 69/167 (41%), Gaps = 53/167 (31%)
 Frame = +3

Query: 9   GNDPPGSKSSWSGQAPSGYGSAPY-----------------GGTGFAAPAQSPSGTAAYG 137
           G  P G +SSW  QAPSGYGS  Y                 GG G A   QSP G A YG
Sbjct: 303 GGPPGGPRSSWPAQAPSGYGSMGYGNTAAWGAPSGGAGSGGGGPGSATAGQSPGGAAGYG 362

Query: 138 NKDFXXXXXXXXXXE-----NQNSYN--AGR----------------------------G 212
           N+ +                N ++Y    GR                            G
Sbjct: 363 NQGYGYGGYAGYGGSDSSYGNSSAYGTVGGRTGSGPNSNASAPGGTELTSSGGSGNYMGG 422

Query: 213 GHANNSGNSVYTSTAWSSDPSQ-NGNYGTAQASGAPAGQVGYSGGYG 350
           G+ + +GNS Y + AW S+ +  +GNYGT Q +G   GQVGY GGYG
Sbjct: 423 GYGDANGNSGYGNAAWRSEQTHASGNYGTPQGNG---GQVGYGGGYG 466


>ref|XP_002315580.1| predicted protein [Populus trichocarpa] gi|222864620|gb|EEF01751.1|
           predicted protein [Populus trichocarpa]
          Length = 459

 Score = 75.9 bits (185), Expect = 7e-12
 Identities = 56/163 (34%), Positives = 68/163 (41%), Gaps = 47/163 (28%)
 Frame = +3

Query: 6   YGNDPPGS-KSSWSGQAPSGYGSAPY---------------GGTGFAAPAQSPSGTAAYG 137
           Y +  PG+ +SSW+ Q  SGYG+  Y               GG G     QSP G A YG
Sbjct: 288 YVSGAPGAPRSSWNSQGSSGYGAMGYGNAASWGAQNAGAGSGGPGSVPAGQSPGGAAGYG 347

Query: 138 NKDFXXXXXXXXXXE--NQNSYNA--GRGGHANNS------------------------- 230
           N+ +             N   Y A  GR G   NS                         
Sbjct: 348 NQGYGYSSYGGNDGSYGNPAGYGAVGGRSGGTPNSNVGGPGGAELQGSGGGYMGSGYGDA 407

Query: 231 -GNSVYTSTAWSSDPSQ-NGNYGTAQASGAPAGQVGYSGGYGA 353
            GNS Y + AW S+ SQ +GNYG  QA+G   GQVGY GGYG+
Sbjct: 408 NGNSGYGNAAWRSEQSQASGNYGAPQANGPHGGQVGYGGGYGS 450