BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00006672
         (826 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002532727.1| lsm1, putative [Ricinus communis] gi|2235275...   233   5e-59
ref|NP_001237465.1| uncharacterized protein LOC100306352 [Glycin...   228   1e-57
ref|XP_002271476.1| PREDICTED: U6 snRNA-associated Sm-like prote...   228   2e-57
ref|XP_002304120.1| predicted protein [Populus trichocarpa] gi|2...   227   3e-57
ref|XP_002331181.1| predicted protein [Populus trichocarpa] gi|1...   225   8e-57

>ref|XP_002532727.1| lsm1, putative [Ricinus communis] gi|223527535|gb|EEF29658.1| lsm1,
           putative [Ricinus communis]
          Length = 128

 Score =  233 bits (593), Expect = 5e-59
 Identities = 116/128 (90%), Positives = 122/128 (95%)
 Frame = -2

Query: 714 MSWAGPEDIFPSTSLASYLDKKLLVLLRDGRKLMGILRSFDQFANVVLESASERVIVGDL 535
           MSWAGPEDI+ STSLASYLDKKLLVLLRDGRKLMGILRSFDQFAN VLE A ERVIVGDL
Sbjct: 1   MSWAGPEDIYLSTSLASYLDKKLLVLLRDGRKLMGILRSFDQFANAVLEGACERVIVGDL 60

Query: 534 YCDIPLGLYVIRGENVVLIGELDLEREELPPHMTRVSAEEIKRAQKAEKDATDLKGSMRK 355
           YCDIPLGLY+IRGENVVLIGELDLE+EELPPHMTRVSA EI+RAQKAE+DATDLKG+MRK
Sbjct: 61  YCDIPLGLYIIRGENVVLIGELDLEKEELPPHMTRVSAAEIRRAQKAERDATDLKGTMRK 120

Query: 354 RMEFLDFD 331
           RMEFLD D
Sbjct: 121 RMEFLDLD 128


>ref|NP_001237465.1| uncharacterized protein LOC100306352 [Glycine max]
           gi|255628281|gb|ACU14485.1| unknown [Glycine max]
          Length = 128

 Score =  228 bits (581), Expect = 1e-57
 Identities = 115/128 (89%), Positives = 120/128 (93%)
 Frame = -2

Query: 714 MSWAGPEDIFPSTSLASYLDKKLLVLLRDGRKLMGILRSFDQFANVVLESASERVIVGDL 535
           MSWAGPEDI+ STSLASYLDKKLLVLLRDGRKLMG LRSFDQFAN VLE A ERVIVGDL
Sbjct: 1   MSWAGPEDIYLSTSLASYLDKKLLVLLRDGRKLMGTLRSFDQFANAVLEGACERVIVGDL 60

Query: 534 YCDIPLGLYVIRGENVVLIGELDLEREELPPHMTRVSAEEIKRAQKAEKDATDLKGSMRK 355
           YCDIPLGLYVIRGENVVLIGELDLEREELP HMTRVS  EIKRAQKAE++A+DLKG+MRK
Sbjct: 61  YCDIPLGLYVIRGENVVLIGELDLEREELPEHMTRVSTAEIKRAQKAEREASDLKGTMRK 120

Query: 354 RMEFLDFD 331
           RMEFLDFD
Sbjct: 121 RMEFLDFD 128


>ref|XP_002271476.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm1 [Vitis
           vinifera] gi|147803430|emb|CAN62239.1| hypothetical
           protein VITISV_033727 [Vitis vinifera]
           gi|297742980|emb|CBI35847.3| unnamed protein product
           [Vitis vinifera]
          Length = 128

 Score =  228 bits (580), Expect = 2e-57
 Identities = 114/128 (89%), Positives = 121/128 (94%)
 Frame = -2

Query: 714 MSWAGPEDIFPSTSLASYLDKKLLVLLRDGRKLMGILRSFDQFANVVLESASERVIVGDL 535
           MSWAGPEDI+ STSLASYLDKKLLVLLRD RKL+GILRSFDQFAN VLE A ERVIVGDL
Sbjct: 1   MSWAGPEDIYLSTSLASYLDKKLLVLLRDNRKLLGILRSFDQFANAVLEGACERVIVGDL 60

Query: 534 YCDIPLGLYVIRGENVVLIGELDLEREELPPHMTRVSAEEIKRAQKAEKDATDLKGSMRK 355
           YCDIPLGLYVIRGENVVLIGELDLE+EELPPHMTRVSA EIKRAQKAE++A+DLKG+MRK
Sbjct: 61  YCDIPLGLYVIRGENVVLIGELDLEKEELPPHMTRVSAAEIKRAQKAEREASDLKGTMRK 120

Query: 354 RMEFLDFD 331
           RMEFLD D
Sbjct: 121 RMEFLDLD 128


>ref|XP_002304120.1| predicted protein [Populus trichocarpa] gi|222841552|gb|EEE79099.1|
           predicted protein [Populus trichocarpa]
          Length = 128

 Score =  227 bits (578), Expect = 3e-57
 Identities = 115/128 (89%), Positives = 119/128 (92%)
 Frame = -2

Query: 714 MSWAGPEDIFPSTSLASYLDKKLLVLLRDGRKLMGILRSFDQFANVVLESASERVIVGDL 535
           MSWAGPEDI+ STSLASYLDKKLLVLLRDGRKLMGILRSFDQFAN VLE A ER IVGDL
Sbjct: 1   MSWAGPEDIYLSTSLASYLDKKLLVLLRDGRKLMGILRSFDQFANAVLEGACERAIVGDL 60

Query: 534 YCDIPLGLYVIRGENVVLIGELDLEREELPPHMTRVSAEEIKRAQKAEKDATDLKGSMRK 355
           YCDI LGLYVIRGENVVLIGELDLEREELPPHMTRVS  EIKRAQKAE++ATDLKG+MRK
Sbjct: 61  YCDIHLGLYVIRGENVVLIGELDLEREELPPHMTRVSEAEIKRAQKAEREATDLKGTMRK 120

Query: 354 RMEFLDFD 331
           RMEFLD D
Sbjct: 121 RMEFLDLD 128


>ref|XP_002331181.1| predicted protein [Populus trichocarpa] gi|118489961|gb|ABK96777.1|
           unknown [Populus trichocarpa x Populus deltoides]
           gi|222873302|gb|EEF10433.1| predicted protein [Populus
           trichocarpa]
          Length = 128

 Score =  225 bits (574), Expect = 8e-57
 Identities = 113/128 (88%), Positives = 120/128 (93%)
 Frame = -2

Query: 714 MSWAGPEDIFPSTSLASYLDKKLLVLLRDGRKLMGILRSFDQFANVVLESASERVIVGDL 535
           MSWAGPEDI+ STSLA+YLDKKLLVLLRDGRKLMG+LRSFDQFAN VLE A ERVIVGDL
Sbjct: 1   MSWAGPEDIYLSTSLANYLDKKLLVLLRDGRKLMGLLRSFDQFANAVLEGACERVIVGDL 60

Query: 534 YCDIPLGLYVIRGENVVLIGELDLEREELPPHMTRVSAEEIKRAQKAEKDATDLKGSMRK 355
           YCDI LGLYVIRGENVVLIGELDLEREELPPHMTRVS  EI+RAQKAE++ATDLKG+MRK
Sbjct: 61  YCDIHLGLYVIRGENVVLIGELDLEREELPPHMTRVSEAEIRRAQKAEREATDLKGTMRK 120

Query: 354 RMEFLDFD 331
           RMEFLD D
Sbjct: 121 RMEFLDLD 128