BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00006671
         (1714 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002521718.1| heterogeneous nuclear ribonucleoprotein, put...   305   2e-80
ref|XP_004134826.1| PREDICTED: heterogeneous nuclear ribonucleop...   299   1e-78
ref|XP_004158841.1| PREDICTED: heterogeneous nuclear ribonucleop...   298   4e-78
ref|XP_002280225.2| PREDICTED: epithelial splicing regulatory pr...   294   6e-77
emb|CAN70556.1| hypothetical protein VITISV_016468 [Vitis vinifera]   292   2e-76

>ref|XP_002521718.1| heterogeneous nuclear ribonucleoprotein, putative [Ricinus communis]
            gi|223539109|gb|EEF40705.1| heterogeneous nuclear
            ribonucleoprotein, putative [Ricinus communis]
          Length = 264

 Score =  305 bits (782), Expect = 2e-80
 Identities = 165/273 (60%), Positives = 182/273 (66%), Gaps = 2/273 (0%)
 Frame = +3

Query: 651  AMLGSGGFSDGYEVGSKRQRMIESHPYFAVTGGTSSYQPYSYSGGLNRA-FPVIRLRGLP 827
            AMLGSGG SDGYEVGSKR RM+ES+PYFAV+GG+S +QPY Y GG   A FPV+RLRGLP
Sbjct: 7    AMLGSGGVSDGYEVGSKRPRMMESNPYFAVSGGSSGFQPYGYGGGFQSAPFPVVRLRGLP 66

Query: 828  FNCTDIDIFKFFTGLDIVDVLLTNKNGRFTGEAFVVFPSSVQSEFALQRDHQSMGRRYVE 1007
            FNCTDIDIFKFF GLDIVDVLL NKNGRFTGEAFVVF  ++Q EFALQRD Q+MGRRYVE
Sbjct: 67   FNCTDIDIFKFFAGLDIVDVLLVNKNGRFTGEAFVVFAGAMQVEFALQRDRQNMGRRYVE 126

Query: 1008 VFRCNKQDYYRAVAAEVKYEGIYD-EYXXXXXXXXXXXXVDKDQLEYTEFLKLRGLPYSV 1184
            VFRC +QDYY AVAAEV YEGIYD +Y             DKDQLEYTE LK+RGLP+S 
Sbjct: 127  VFRCKRQDYYNAVAAEVNYEGIYDTDYHGSPPPSKAKRFSDKDQLEYTEILKMRGLPFSA 186

Query: 1185 TKSDIVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXK 1364
             K +I+                                                     +
Sbjct: 187  KKPEII---------------EFFKEFELVEDRIHIACRPDGKATGEAYVEFASADEAKR 231

Query: 1365 AMDKDKMTIGSRYVELFTSTPDEARRAKSRSRQ 1463
            AM KDKMTIGSRYVELF STPDEARRA+SRSRQ
Sbjct: 232  AMSKDKMTIGSRYVELFPSTPDEARRAESRSRQ 264


>ref|XP_004134826.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F-like [Cucumis
            sativus]
          Length = 263

 Score =  299 bits (766), Expect = 1e-78
 Identities = 164/272 (60%), Positives = 179/272 (65%), Gaps = 1/272 (0%)
 Frame = +3

Query: 651  AMLGSGGFSDGYEVGSKRQRMIESHPYFAVTGGTSSYQPYSY-SGGLNRAFPVIRLRGLP 827
            AMLGSGG SDGYEVGSKRQRM+E +PYFAV+  T+ +QPY Y S     AFPV+RLRGLP
Sbjct: 7    AMLGSGGVSDGYEVGSKRQRMMEPNPYFAVSSSTAGFQPYGYGSFPPTHAFPVVRLRGLP 66

Query: 828  FNCTDIDIFKFFTGLDIVDVLLTNKNGRFTGEAFVVFPSSVQSEFALQRDHQSMGRRYVE 1007
            FNCTDIDIFKFF GLDIVDVLL NKNGRF GEAFVVF  SVQ EFALQRD Q+MGRRYVE
Sbjct: 67   FNCTDIDIFKFFAGLDIVDVLLVNKNGRFMGEAFVVFAGSVQVEFALQRDRQNMGRRYVE 126

Query: 1008 VFRCNKQDYYRAVAAEVKYEGIYDEYXXXXXXXXXXXXVDKDQLEYTEFLKLRGLPYSVT 1187
            VFRC +QDYY AVAAEV YEGIYD               DKDQ+EYTE LKLRGLP+SVT
Sbjct: 127  VFRCKRQDYYNAVAAEVNYEGIYDNDYHGSPPPRQKRFSDKDQMEYTEILKLRGLPFSVT 186

Query: 1188 KSDIVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKA 1367
            KS+I+                                                     +A
Sbjct: 187  KSNII---------------EFFGEFDLAEDRIHIASRPDGKATGEAYVEFASAEEAKRA 231

Query: 1368 MDKDKMTIGSRYVELFTSTPDEARRAKSRSRQ 1463
            M KDKMTIGSRYVELF STP+EARRA+SRSRQ
Sbjct: 232  MSKDKMTIGSRYVELFPSTPNEARRAESRSRQ 263


>ref|XP_004158841.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F-like [Cucumis
            sativus]
          Length = 256

 Score =  298 bits (762), Expect = 4e-78
 Identities = 163/271 (60%), Positives = 178/271 (65%), Gaps = 1/271 (0%)
 Frame = +3

Query: 654  MLGSGGFSDGYEVGSKRQRMIESHPYFAVTGGTSSYQPYSY-SGGLNRAFPVIRLRGLPF 830
            MLGSGG SDGYEVGSKRQRM+E +PYFAV+  T+ +QPY Y S     AFPV+RLRGLPF
Sbjct: 1    MLGSGGVSDGYEVGSKRQRMMEPNPYFAVSSSTAGFQPYGYGSFPPTHAFPVVRLRGLPF 60

Query: 831  NCTDIDIFKFFTGLDIVDVLLTNKNGRFTGEAFVVFPSSVQSEFALQRDHQSMGRRYVEV 1010
            NCTDIDIFKFF GLDIVDVLL NKNGRF GEAFVVF  SVQ EFALQRD Q+MGRRYVEV
Sbjct: 61   NCTDIDIFKFFAGLDIVDVLLVNKNGRFMGEAFVVFAGSVQVEFALQRDRQNMGRRYVEV 120

Query: 1011 FRCNKQDYYRAVAAEVKYEGIYDEYXXXXXXXXXXXXVDKDQLEYTEFLKLRGLPYSVTK 1190
            FRC +QDYY AVAAEV YEGIYD               DKDQ+EYTE LKLRGLP+SVTK
Sbjct: 121  FRCKRQDYYNAVAAEVNYEGIYDNDYHGSPPPRQKRFSDKDQMEYTEILKLRGLPFSVTK 180

Query: 1191 SDIVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKAM 1370
            S+I+                                                     +AM
Sbjct: 181  SNII---------------EFFGEFDLAEDRIHIASRPDGKATGEAYVEFASAEEAKRAM 225

Query: 1371 DKDKMTIGSRYVELFTSTPDEARRAKSRSRQ 1463
             KDKMTIGSRYVELF STP+EARRA+SRSRQ
Sbjct: 226  SKDKMTIGSRYVELFPSTPNEARRAESRSRQ 256


>ref|XP_002280225.2| PREDICTED: epithelial splicing regulatory protein 2-like [Vitis
            vinifera]
          Length = 264

 Score =  294 bits (752), Expect = 6e-77
 Identities = 159/273 (58%), Positives = 180/273 (65%), Gaps = 2/273 (0%)
 Frame = +3

Query: 651  AMLGSGGFSDGYEVGSKRQRMIESHPYFAVTGGTSSYQPYSYSGGLNR-AFPVIRLRGLP 827
            AMLGSGG SDGYE+GSKRQRM+ES+PYFAV+   S +QPY Y  G     FPV+RLRGLP
Sbjct: 7    AMLGSGGVSDGYEIGSKRQRMMESNPYFAVSSSASGFQPYGYGSGFQPPTFPVVRLRGLP 66

Query: 828  FNCTDIDIFKFFTGLDIVDVLLTNKNGRFTGEAFVVFPSSVQSEFALQRDHQSMGRRYVE 1007
            FNCTDIDIFKFF GLDIVDVLL NK+GRF+GEA+VVF  S+Q++FALQRD Q+MGRRYVE
Sbjct: 67   FNCTDIDIFKFFAGLDIVDVLLVNKSGRFSGEAYVVFAGSMQADFALQRDRQNMGRRYVE 126

Query: 1008 VFRCNKQDYYRAVAAEVKYEGIYD-EYXXXXXXXXXXXXVDKDQLEYTEFLKLRGLPYSV 1184
            VFRC KQDYY AVA+EV YEGIYD ++             DKDQ+E+TE LKLRGLP+SV
Sbjct: 127  VFRCKKQDYYHAVASEVNYEGIYDNDFHGSPPPSRSKRFSDKDQMEHTEILKLRGLPFSV 186

Query: 1185 TKSDIVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXK 1364
             KS I+                                                     K
Sbjct: 187  KKSQIL---------------EFFGDFELGDDKVHIACRPDGKATGEAYVEFASAEEAKK 231

Query: 1365 AMDKDKMTIGSRYVELFTSTPDEARRAKSRSRQ 1463
            AM KDKMTIGSRYVELF STPDEARRA+SRSRQ
Sbjct: 232  AMGKDKMTIGSRYVELFPSTPDEARRAESRSRQ 264


>emb|CAN70556.1| hypothetical protein VITISV_016468 [Vitis vinifera]
          Length = 257

 Score =  292 bits (748), Expect = 2e-76
 Identities = 158/272 (58%), Positives = 179/272 (65%), Gaps = 2/272 (0%)
 Frame = +3

Query: 654  MLGSGGFSDGYEVGSKRQRMIESHPYFAVTGGTSSYQPYSYSGGLNR-AFPVIRLRGLPF 830
            MLGSGG SDGYE+GSKRQRM+ES+PYFAV+   S +QPY Y  G     FPV+RLRGLPF
Sbjct: 1    MLGSGGVSDGYEIGSKRQRMMESNPYFAVSSSASGFQPYGYGSGFQPPTFPVVRLRGLPF 60

Query: 831  NCTDIDIFKFFTGLDIVDVLLTNKNGRFTGEAFVVFPSSVQSEFALQRDHQSMGRRYVEV 1010
            NCTDIDIFKFF GLDIVDVLL NK+GRF+GEA+VVF  S+Q++FALQRD Q+MGRRYVEV
Sbjct: 61   NCTDIDIFKFFAGLDIVDVLLVNKSGRFSGEAYVVFAGSMQADFALQRDRQNMGRRYVEV 120

Query: 1011 FRCNKQDYYRAVAAEVKYEGIYD-EYXXXXXXXXXXXXVDKDQLEYTEFLKLRGLPYSVT 1187
            FRC KQDYY AVA+EV YEGIYD ++             DKDQ+E+TE LKLRGLP+SV 
Sbjct: 121  FRCKKQDYYHAVASEVNYEGIYDNDFHGSPPPSRSKRFSDKDQMEHTEILKLRGLPFSVK 180

Query: 1188 KSDIVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKA 1367
            KS I+                                                     KA
Sbjct: 181  KSQIL---------------EFFGDFELGDDKVHIACRPDGKATGEAYVEFASAEEAKKA 225

Query: 1368 MDKDKMTIGSRYVELFTSTPDEARRAKSRSRQ 1463
            M KDKMTIGSRYVELF STPDEARRA+SRSRQ
Sbjct: 226  MGKDKMTIGSRYVELFPSTPDEARRAESRSRQ 257