BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00006670
         (1795 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002305539.1| f-box family protein [Populus trichocarpa] g...   183   1e-43
ref|XP_002313690.1| f-box family protein [Populus trichocarpa] g...   174   5e-41
ref|NP_565401.1| F-box protein SKIP23 [Arabidopsis thaliana] gi|...   154   1e-34
ref|XP_002884031.1| hypothetical protein ARALYDRAFT_480586 [Arab...   152   3e-34
ref|XP_004154592.1| PREDICTED: F-box protein SKIP23-like [Cucumi...   150   1e-33

>ref|XP_002305539.1| f-box family protein [Populus trichocarpa]
            gi|222848503|gb|EEE86050.1| f-box family protein [Populus
            trichocarpa]
          Length = 469

 Score =  183 bits (465), Expect = 1e-43
 Identities = 131/476 (27%), Positives = 220/476 (46%), Gaps = 1/476 (0%)
 Frame = -1

Query: 1645 DWSQLPEDMLAKVSTNLDNHIEFLQFRAVCHSWRSSTSLVPTSPAGVELPYPIIPAPNPF 1466
            +W+ LP+D++  +S  LD   + L+FR+VC+SWR   S +P        P P   + N F
Sbjct: 3    EWTHLPKDLMELISKRLDTSTDLLRFRSVCNSWR---SSIP--------PEPPCLSSNTF 51

Query: 1465 -IIHNIHFTDTHFHSQVNDQHNXXXXXXXXXXXXXXXENIMNMVTPPDFYCDYEQENRLG 1289
             I+ N   + T F                                               
Sbjct: 52   KILPNDGISHTSFG---------------------------------------------- 65

Query: 1288 SCMLTLVEHTIYAVQPLHQPEAQSSSSPKGWIIKVKETRPNVFQFLEPLSGCPIKVLPNS 1109
                +L + T++ V     P + + +  +GW+IK++E  P      +PLS C    LPN+
Sbjct: 66   ---FSLFKRTVFLVG---LPNSHNQTDTQGWLIKIEEDVPGKKHLFDPLSRCRSTSLPNN 119

Query: 1108 FPKMLNTLDFKIYVIGKEYHLEKAESEREGRKAKQSMDHFGVRKLVFSRAATSSDFVVMA 929
             P++L+ ++ +I  +G EY L     +        + + + + K+V     + ++FV++ 
Sbjct: 120  LPRVLDLMNLRIRELGHEYVLHHLNYKPNSSSFTDAGNLY-MEKVVMIWLNSLTEFVLLT 178

Query: 928  IHSSGKLVLFRSGDNNWSVIEYQEDKFQDLIHYRGKFYAVETSGRTYIVDPHTKNVSLVT 749
            IH SGKL +F+SGD  W++I      F D+I Y+G+FYAV+ +GRT +V   T N+ LV 
Sbjct: 179  IHVSGKLAIFKSGDKRWTIINEMPSPFDDVIVYKGRFYAVDNTGRTVVVAMDT-NLGLVG 237

Query: 748  HSFLHGGNKVCFLESLGNLYVISIHANSSPILLELRDGLPNSPRMVWEEEILNLGIEMKG 569
            +  + GG+K   +ES G+L ++ ++ +                  +  +E L++G ++  
Sbjct: 238  NP-VFGGDKKYLVESKGDLLLVDMYLS------------------IDSDEGLSIGHDVVQ 278

Query: 568  IPTQICSIHKAMKCNVYKLDDRGDEWGSVKSLGDRIFLVGGRSSFSVSASDFLPGCEGKC 389
               Q  S  + +   V+KL++ G  W  V  L DR+  +G   +FS SAS+ L GC+G C
Sbjct: 279  DLVQYMS-ERTVWFKVFKLNEEGKCWIEVNDLEDRVLFLGDDLTFSASASE-LSGCKGNC 336

Query: 388  FLLTHSHFTRQSAFRTNQNFVNQGIGVYNLADGSIRKLDDIPNYPQLFWPPPMWTA 221
                   F  +        F  + IGV+ L  G I  L + P+  ++FWPPP W A
Sbjct: 337  IFFNDDFFYSRGEGDDGSLF-GRDIGVFELESGCIGPLRNFPDNSKMFWPPPDWVA 391


>ref|XP_002313690.1| f-box family protein [Populus trichocarpa]
            gi|222850098|gb|EEE87645.1| f-box family protein [Populus
            trichocarpa]
          Length = 410

 Score =  174 bits (442), Expect = 5e-41
 Identities = 108/358 (30%), Positives = 186/358 (51%)
 Frame = -1

Query: 1231 PEAQSSSSPKGWIIKVKETRPNVFQFLEPLSGCPIKVLPNSFPKMLNTLDFKIYVIGKEY 1052
            P + + +  +GW++K++E  P      +PLS C    L +S P++L+ ++ +I  +G EY
Sbjct: 79   PNSHNQTDLQGWLVKIEEDVPGKKHLFDPLSRCRSTSLHHSLPRVLDLMNLRIRELGHEY 138

Query: 1051 HLEKAESEREGRKAKQSMDHFGVRKLVFSRAATSSDFVVMAIHSSGKLVLFRSGDNNWSV 872
             L    S +    +     +  + K+V       ++FV++ IH SGKL +F+SGD  W++
Sbjct: 139  VLHHV-SYKPNSSSFTDAGNLYMEKVVMIWLNCETEFVLLTIHVSGKLAMFKSGDKRWTI 197

Query: 871  IEYQEDKFQDLIHYRGKFYAVETSGRTYIVDPHTKNVSLVTHSFLHGGNKVCFLESLGNL 692
            I      F D+I Y+G+FYAV+ +GRT +V   T ++ LV    + GG+K   +ES G+L
Sbjct: 198  INEMPSPFDDVIVYKGRFYAVDNTGRTVVVALDT-DLGLVGDP-VFGGDKKYLVESKGDL 255

Query: 691  YVISIHANSSPILLELRDGLPNSPRMVWEEEILNLGIEMKGIPTQICSIHKAMKCNVYKL 512
             ++ ++ +                  +  +E L++G ++     Q  S  + ++  V+KL
Sbjct: 256  LLVDMYLS------------------IDTDEGLSIGNDVVQDLVQYMS-ERTVRFKVFKL 296

Query: 511  DDRGDEWGSVKSLGDRIFLVGGRSSFSVSASDFLPGCEGKCFLLTHSHFTRQSAFRTNQN 332
            ++ G  W  VK+L DR+  +G  S+FS SAS+ L GC+G C     + F  +     + +
Sbjct: 297  NEEGKSWIEVKNLEDRVLFLGDDSTFSASASE-LSGCKGNCIFFEDNFFYSREE-GDDGS 354

Query: 331  FVNQGIGVYNLADGSIRKLDDIPNYPQLFWPPPMWTAVL*DVADAMTITESLERNELE 158
             + + IGV+ L  G I  L + P+Y ++FWPPP W         A T  E   +N+LE
Sbjct: 355  MIGRDIGVFELESGCIGPLRNFPDYSKMFWPPPDWI--------ASTSLEVQNQNQLE 404


>ref|NP_565401.1| F-box protein SKIP23 [Arabidopsis thaliana]
            gi|122215148|sp|Q3EBZ2.1|SKI23_ARATH RecName: Full=F-box
            protein SKIP23; AltName: Full=SKP1-interacting partner 23
            gi|119935952|gb|ABM06043.1| At2g17030 [Arabidopsis
            thaliana] gi|330251480|gb|AEC06574.1| F-box protein
            SKIP23 [Arabidopsis thaliana]
          Length = 407

 Score =  154 bits (388), Expect = 1e-34
 Identities = 103/354 (29%), Positives = 176/354 (49%), Gaps = 5/354 (1%)
 Frame = -1

Query: 1273 LVEHTIYAVQPLHQPEAQSSSSPKGWIIKVKETR--PNVFQFLEPLSGCPIK-VLPNSFP 1103
            L + +I  ++P H+P  +S S   GW+IKV+E    P     L+PL  C  +  +P +FP
Sbjct: 70   LSQRSILLIKP-HEPCIESDSF--GWLIKVEEDLNVPRKVTLLDPL--CDTRNSIPENFP 124

Query: 1102 KMLNTLDFKIYVIGKEYHLEKAESEREGRKAKQSMDHFGVRKLVFSRAATSSD--FVVMA 929
            ++L+   FK+  +G+E+ L    +  +       ++   + K V        D  FV++ 
Sbjct: 125  RVLDMSKFKVRELGREFKLHYFNTVGD------IVESLYLEKAVVKYLDCDGDYKFVLLT 178

Query: 928  IHSSGKLVLFRSGDNNWSVIEYQEDKFQDLIHYRGKFYAVETSGRTYIVDPHTKNVSLVT 749
            IH SGKL +FRS D  W+VI      + D++ + G+F+AV+ +GRT +VD  +  ++LV 
Sbjct: 179  IHVSGKLAVFRSWDRAWTVINDMPSPYDDVMLFDGRFFAVDNNGRTVVVDYSSLKLTLVA 238

Query: 748  HSFLHGGNKVCFLESLGNLYVISIHANSSPILLELRDGLPNSPRMVWEEEILNLGIEMKG 569
             S + GG+K   +ES G + ++ ++     + LE  +G P     ++E     +      
Sbjct: 239  -SPVFGGDKKFLIESCGEMLLVDMY-----LSLEAVEGDPGFVEEIFEHPAFYMN----- 287

Query: 568  IPTQICSIHKAMKCNVYKLDDRGDEWGSVKSLGDRIFLVGGRSSFSVSASDFLPGCEGKC 389
                     + +K  VY+  +R + W  V  L D++  +G  S+FS SASD LP C+G  
Sbjct: 288  --------ERTVKFKVYRFVEREESWVDVYDLEDKMLFLGDDSTFSASASDILPLCDGSS 339

Query: 388  FLLTHSHFTRQSAFRTNQNFVNQGIGVYNLADGSIRKLDDIPNYPQLFWPPPMW 227
                 + F  +          ++ +GV++   G I  +  +P Y +LFWPPP W
Sbjct: 340  VFFNGNVFNGEDLGAMQ----DRDLGVFDFRSGKIELVQKLPEYAKLFWPPPPW 389


>ref|XP_002884031.1| hypothetical protein ARALYDRAFT_480586 [Arabidopsis lyrata subsp.
            lyrata] gi|297329871|gb|EFH60290.1| hypothetical protein
            ARALYDRAFT_480586 [Arabidopsis lyrata subsp. lyrata]
          Length = 395

 Score =  152 bits (384), Expect = 3e-34
 Identities = 101/353 (28%), Positives = 172/353 (48%), Gaps = 4/353 (1%)
 Frame = -1

Query: 1273 LVEHTIYAVQPLHQPEAQSSSSPKGWIIKVKETR--PNVFQFLEPLSGCPIKVLPNSFPK 1100
            L + +I  ++P   P  ++ S   GW+IKV+E    P     L+PL       +P +FP 
Sbjct: 70   LSQRSILLIKPHEPPHNEADSF--GWLIKVEEDLNVPRKVTLLDPLCD-KRNSIPENFPH 126

Query: 1099 MLNTLDFKIYVIGKEYHLEKAESEREGRKAKQSMDHFGVRKLV--FSRAATSSDFVVMAI 926
            +L+   FK+  +G+E+ L    +  +       ++   + K V  +        FV++ I
Sbjct: 127  VLDMSKFKVRELGREFKLHYFNTVGD------IVESLYLEKAVVKYLDCDVEYKFVLLTI 180

Query: 925  HSSGKLVLFRSGDNNWSVIEYQEDKFQDLIHYRGKFYAVETSGRTYIVDPHTKNVSLVTH 746
            H SGKL +FRS D  W+VI      + D+I + G+F+AV+ +GRT +VD  +  ++LV  
Sbjct: 181  HVSGKLAVFRSWDRAWTVINDMPSPYDDVILFDGRFFAVDNNGRTVVVDYSSLKLTLVA- 239

Query: 745  SFLHGGNKVCFLESLGNLYVISIHANSSPILLELRDGLPNSPRMVWEEEILNLGIEMKGI 566
            S + GG+K   +ES G + ++ ++     + LE  +G P     ++E     +       
Sbjct: 240  SPVFGGDKKFLIESCGEMLLVDMY-----LSLEAVEGDPGFVEEIFEHPAFYMN------ 288

Query: 565  PTQICSIHKAMKCNVYKLDDRGDEWGSVKSLGDRIFLVGGRSSFSVSASDFLPGCEGKCF 386
                    + +K  VY+  +R + W  V  L D++  +G  S+FS SASD LP C+G   
Sbjct: 289  -------ERTVKFKVYRFVEREESWVDVYDLEDKMLFLGDDSTFSASASDILPTCDGSSV 341

Query: 385  LLTHSHFTRQSAFRTNQNFVNQGIGVYNLADGSIRKLDDIPNYPQLFWPPPMW 227
                + F  +          ++ +GV++L  G I  +  +P Y +LFWPPP W
Sbjct: 342  FFNGNVFNGEDLGAMQ----DRDLGVFDLRTGKIELVQKLPEYAKLFWPPPPW 390


>ref|XP_004154592.1| PREDICTED: F-box protein SKIP23-like [Cucumis sativus]
          Length = 458

 Score =  150 bits (378), Expect = 1e-33
 Identities = 102/326 (31%), Positives = 154/326 (47%), Gaps = 1/326 (0%)
 Frame = -1

Query: 1201 GWIIKVKETRPNVFQFLEPLSGCPIKVLPNSFPKMLNTLDFKIYVIGKEYHLEKAESERE 1022
            GW+IKV+E    + +   PLS    K LP +FPK+LN L+F +  + +EY L        
Sbjct: 84   GWLIKVEEDACGMIKISNPLSKSYFKPLPKNFPKVLNLLNFPVLELCQEYVLHYLNFWPV 143

Query: 1021 GRKAKQSMDHFGVRKLVFSRAATSSDFVVMAIHSSGKLVLFRSGDNNWSVIEYQEDKFQD 842
              +   + D +  +          S FV++ IH SGKL +F+S D  WS I +    + D
Sbjct: 144  RHRPGDAGDLYREKIAYKCLNYDGSQFVLVTIHVSGKLAMFKSEDGQWSTIHHTALPYDD 203

Query: 841  LIHYRGKFYAVETSGRTYIVDPHTKNVSLVTHSFLHGGNKVCFLESLGNLYVISIHANSS 662
            +I + G+FYAV+ SG T++V+   K V+L+    + GG+K   +E  G L ++ ++    
Sbjct: 204  VILFNGEFYAVDNSGATFLVESQHK-VTLIAEP-VFGGDKKILMECNGELLLVDMYLT-- 259

Query: 661  PILLELRDGLPNSPRMVWEEEILNLGIEMKGIPTQICSIHKAMKCNVYKLDDRGD-EWGS 485
                            V  EE    G  + G PT+     K +   V+KL   G  +W  
Sbjct: 260  ----------------VDSEE----GFGLDGEPTEGVLHEKTVGFKVFKLHRNGSKKWTV 299

Query: 484  VKSLGDRIFLVGGRSSFSVSASDFLPGCEGKCFLLTHSHFTRQSAFRTNQNFVNQGIGVY 305
            V  LG+ +  +G   SFS SAS  + GC+G C   T            +  F    I ++
Sbjct: 300  VCDLGNTMLFLGENCSFSASASG-VSGCKGNCIFFTDGFLCPN--VDEDDVFKGSDIAIF 356

Query: 304  NLADGSIRKLDDIPNYPQLFWPPPMW 227
            +L  G+I  L D P Y +LFWPPP W
Sbjct: 357  DLEFGTISPLSDSPMYSRLFWPPPSW 382