BLASTX nr result
ID: Coptis25_contig00006669
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis25_contig00006669
(338 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_001056941.1| Os06g0172600 [Oryza sativa Japonica Group] g... 105 3e-21
emb|CBI35991.3| unnamed protein product [Vitis vinifera] 105 3e-21
ref|XP_003608708.1| 40S ribosomal protein S30 [Medicago truncatu... 105 3e-21
ref|XP_003564241.1| PREDICTED: 40S ribosomal protein S30-like [B... 104 8e-21
ref|XP_004141041.1| PREDICTED: 40S ribosomal protein S30-like is... 103 1e-20
>ref|NP_001056941.1| Os06g0172600 [Oryza sativa Japonica Group]
gi|226499664|ref|NP_001149323.1| LOC100282946 [Zea mays]
gi|224119458|ref|XP_002318077.1| predicted protein
[Populus trichocarpa] gi|224131468|ref|XP_002321092.1|
predicted protein [Populus trichocarpa]
gi|224135953|ref|XP_002322202.1| predicted protein
[Populus trichocarpa] gi|225442365|ref|XP_002281376.1|
PREDICTED: 40S ribosomal protein S30-like [Vitis
vinifera] gi|225445010|ref|XP_002283033.1| PREDICTED:
40S ribosomal protein S30-like [Vitis vinifera]
gi|242066882|ref|XP_002454730.1| hypothetical protein
SORBIDRAFT_04g036360 [Sorghum bicolor]
gi|242092158|ref|XP_002436569.1| hypothetical protein
SORBIDRAFT_10g004940 [Sorghum bicolor]
gi|255546235|ref|XP_002514177.1| 40S ribosomal protein
S30, putative [Ricinus communis]
gi|255549688|ref|XP_002515895.1| 40S ribosomal protein
S30, putative [Ricinus communis]
gi|356497139|ref|XP_003517420.1| PREDICTED: 40S
ribosomal protein S30 [Glycine max]
gi|356514308|ref|XP_003525848.1| PREDICTED: 40S
ribosomal protein S30-like [Glycine max]
gi|356540686|ref|XP_003538817.1| PREDICTED: 40S
ribosomal protein S30-like [Glycine max]
gi|449435804|ref|XP_004135684.1| PREDICTED: 40S
ribosomal protein S30-like [Cucumis sativus]
gi|449446568|ref|XP_004141043.1| PREDICTED: 40S
ribosomal protein S30-like isoform 3 [Cucumis sativus]
gi|449488007|ref|XP_004157910.1| PREDICTED: 40S
ribosomal protein S30-like isoform 2 [Cucumis sativus]
gi|449489835|ref|XP_004158430.1| PREDICTED: 40S
ribosomal protein S30-like [Cucumis sativus]
gi|313103647|pdb|3IZ6|Z Chain Z, Localization Of The
Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em
Map Of Triticum Aestivum Translating 80s Ribosome
gi|47497376|dbj|BAD19414.1| 40S ribosomal protein
S30-like [Oryza sativa Japonica Group]
gi|51090595|dbj|BAD36047.1| 40S ribosomal protein
S30-like [Oryza sativa Japonica Group]
gi|55773694|dbj|BAD72277.1| 40S ribosomal protein
S30-like [Oryza sativa Japonica Group]
gi|113594981|dbj|BAF18855.1| Os06g0172600 [Oryza sativa
Japonica Group] gi|118482205|gb|ABK93031.1| unknown
[Populus trichocarpa] gi|118483097|gb|ABK93458.1|
unknown [Populus trichocarpa]
gi|118483320|gb|ABK93562.1| unknown [Populus
trichocarpa] gi|118484154|gb|ABK93960.1| unknown
[Populus trichocarpa] gi|118484319|gb|ABK94037.1|
unknown [Populus trichocarpa]
gi|118487828|gb|ABK95737.1| unknown [Populus
trichocarpa] gi|195607768|gb|ACG25714.1| 40S ribosomal
protein S30 [Zea mays] gi|195610010|gb|ACG26835.1| 40S
ribosomal protein S30 [Zea mays]
gi|195616154|gb|ACG29907.1| 40S ribosomal protein S30
[Zea mays] gi|195617990|gb|ACG30825.1| 40S ribosomal
protein S30 [Zea mays] gi|195618464|gb|ACG31062.1| 40S
ribosomal protein S30 [Zea mays]
gi|195619280|gb|ACG31470.1| 40S ribosomal protein S30
[Zea mays] gi|195626382|gb|ACG35021.1| 40S ribosomal
protein S30 [Zea mays] gi|195639864|gb|ACG39400.1| 40S
ribosomal protein S30 [Zea mays]
gi|222858750|gb|EEE96297.1| predicted protein [Populus
trichocarpa] gi|222861865|gb|EEE99407.1| predicted
protein [Populus trichocarpa]
gi|222869198|gb|EEF06329.1| predicted protein [Populus
trichocarpa] gi|223544800|gb|EEF46315.1| 40S ribosomal
protein S30, putative [Ricinus communis]
gi|223546633|gb|EEF48131.1| 40S ribosomal protein S30,
putative [Ricinus communis] gi|241914792|gb|EER87936.1|
hypothetical protein SORBIDRAFT_10g004940 [Sorghum
bicolor] gi|241934561|gb|EES07706.1| hypothetical
protein SORBIDRAFT_04g036360 [Sorghum bicolor]
gi|255640004|gb|ACU20293.1| unknown [Glycine max]
gi|388512567|gb|AFK44345.1| unknown [Lotus japonicus]
gi|388520079|gb|AFK48101.1| unknown [Lotus japonicus]
gi|413939361|gb|AFW73912.1| 40S ribosomal protein S30
[Zea mays] gi|413944459|gb|AFW77108.1| 40S ribosomal
protein S30 [Zea mays]
Length = 62
Score = 105 bits (263), Expect = 3e-21
Identities = 52/62 (83%), Positives = 52/62 (83%)
Frame = +1
Query: 115 MGKVHGSLARAGKVRGQTPXXXXXXXXXXPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS 294
MGKVHGSLARAGKVRGQTP PRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS
Sbjct: 1 MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS 60
Query: 295 EK 300
EK
Sbjct: 61 EK 62
>emb|CBI35991.3| unnamed protein product [Vitis vinifera]
Length = 113
Score = 105 bits (263), Expect = 3e-21
Identities = 52/62 (83%), Positives = 52/62 (83%)
Frame = +1
Query: 115 MGKVHGSLARAGKVRGQTPXXXXXXXXXXPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS 294
MGKVHGSLARAGKVRGQTP PRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS
Sbjct: 52 MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS 111
Query: 295 EK 300
EK
Sbjct: 112 EK 113
>ref|XP_003608708.1| 40S ribosomal protein S30 [Medicago truncatula]
gi|357482045|ref|XP_003611308.1| 40S ribosomal protein
S30 [Medicago truncatula] gi|355509763|gb|AES90905.1|
40S ribosomal protein S30 [Medicago truncatula]
gi|355512643|gb|AES94266.1| 40S ribosomal protein S30
[Medicago truncatula]
Length = 62
Score = 105 bits (263), Expect = 3e-21
Identities = 52/62 (83%), Positives = 52/62 (83%)
Frame = +1
Query: 115 MGKVHGSLARAGKVRGQTPXXXXXXXXXXPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS 294
MGKVHGSLARAGKVRGQTP PRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS
Sbjct: 1 MGKVHGSLARAGKVRGQTPKVAKQDKKKQPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS 60
Query: 295 EK 300
EK
Sbjct: 61 EK 62
>ref|XP_003564241.1| PREDICTED: 40S ribosomal protein S30-like [Brachypodium distachyon]
gi|357137539|ref|XP_003570358.1| PREDICTED: 40S
ribosomal protein S30-like [Brachypodium distachyon]
gi|326525289|dbj|BAK07914.1| predicted protein [Hordeum
vulgare subsp. vulgare]
Length = 62
Score = 104 bits (259), Expect = 8e-21
Identities = 51/62 (82%), Positives = 52/62 (83%)
Frame = +1
Query: 115 MGKVHGSLARAGKVRGQTPXXXXXXXXXXPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS 294
MGKVHGSLARAGKVRGQTP PRGRAHKR+QYNRRFVTAVVGFGKKRGPNSS
Sbjct: 1 MGKVHGSLARAGKVRGQTPKVAKQDKKKQPRGRAHKRIQYNRRFVTAVVGFGKKRGPNSS 60
Query: 295 EK 300
EK
Sbjct: 61 EK 62
>ref|XP_004141041.1| PREDICTED: 40S ribosomal protein S30-like isoform 1 [Cucumis
sativus] gi|449446566|ref|XP_004141042.1| PREDICTED: 40S
ribosomal protein S30-like isoform 2 [Cucumis sativus]
gi|449488005|ref|XP_004157909.1| PREDICTED: 40S
ribosomal protein S30-like isoform 1 [Cucumis sativus]
Length = 76
Score = 103 bits (258), Expect = 1e-20
Identities = 51/61 (83%), Positives = 51/61 (83%)
Frame = +1
Query: 118 GKVHGSLARAGKVRGQTPXXXXXXXXXXPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSE 297
GKVHGSLARAGKVRGQTP PRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSE
Sbjct: 16 GKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSE 75
Query: 298 K 300
K
Sbjct: 76 K 76