BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00006658
         (1208 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAN78612.1| hypothetical protein VITISV_028922 [Vitis vinifera]   352   8e-95
ref|XP_004143147.1| PREDICTED: 50S ribosomal protein L4, chlorop...   341   2e-91
ref|XP_002309469.1| predicted protein [Populus trichocarpa] gi|2...   335   1e-89
ref|XP_002525600.1| 50S ribosomal protein L4, putative [Ricinus ...   323   4e-86
sp|O80361.1|RK4_TOBAC RecName: Full=50S ribosomal protein L4, ch...   312   1e-82

>emb|CAN78612.1| hypothetical protein VITISV_028922 [Vitis vinifera]
          Length = 306

 Score =  352 bits (904), Expect = 8e-95
 Identities = 177/222 (79%), Positives = 195/222 (87%)
 Frame = -1

Query: 1115 KPLKPLSIHAQLSTIPILSFEGEKIGETYLDLKSAPPETARAVVHRGIITDQQNSRRGTA 936
            KPLKPLS+ + L  IPILSF GEK+GET L+LKSAP +TARAVVHRGIITD QN RRGTA
Sbjct: 39   KPLKPLSVRSDLVAIPILSFTGEKVGETQLNLKSAPLDTARAVVHRGIITDLQNRRRGTA 98

Query: 935  STLTRAEVRGGGKKPYPQKKTGRARRGSQRTPLRXXXXXXXXXXXKDWSIKINRKEKRLA 756
            STLTR EVRGGGKKPYPQKKTGRARRGSQRTPLR           +DWSIKINRKEKRLA
Sbjct: 99   STLTRGEVRGGGKKPYPQKKTGRARRGSQRTPLRPGGGVVFGPKPRDWSIKINRKEKRLA 158

Query: 755  ISTALSSASVNTIVVEDFVDKFDKPKTKEFIEALKRWGLDPNEKSMFLLNEVSDNVKLSS 576
            ISTA+SSA+VNTIVVEDF DKFDKPKTKEFI A+KRWG+DP EKSMFL+ EVSDNV+LSS
Sbjct: 159  ISTAMSSAAVNTIVVEDFSDKFDKPKTKEFISAMKRWGIDPKEKSMFLMTEVSDNVRLSS 218

Query: 575  RNIGTVKMLTPRTLNLFDILNADKVVLTKTTVDYLNRMYGLD 450
            RNIGT+KMLTPRTLNLFDILN+DK+VLT+ TVDYLNRMY ++
Sbjct: 219  RNIGTLKMLTPRTLNLFDILNSDKLVLTQETVDYLNRMYAVE 260


>ref|XP_004143147.1| PREDICTED: 50S ribosomal protein L4, chloroplastic-like [Cucumis
            sativus] gi|449496602|ref|XP_004160176.1| PREDICTED: 50S
            ribosomal protein L4, chloroplastic-like [Cucumis
            sativus]
          Length = 288

 Score =  341 bits (875), Expect = 2e-91
 Identities = 171/226 (75%), Positives = 196/226 (86%), Gaps = 1/226 (0%)
 Frame = -1

Query: 1121 SFKP-LKPLSIHAQLSTIPILSFEGEKIGETYLDLKSAPPETARAVVHRGIITDQQNSRR 945
            S KP  K LSI ++L+T+P+LSF G+K+GETYLDLKSAPPETARAVVHR IITDQQN RR
Sbjct: 37   SLKPQTKTLSISSELATLPVLSFTGQKVGETYLDLKSAPPETARAVVHRAIITDQQNKRR 96

Query: 944  GTASTLTRAEVRGGGKKPYPQKKTGRARRGSQRTPLRXXXXXXXXXXXKDWSIKINRKEK 765
            GTASTLTRAEV GGGKKPY QKKTGRARRGS RTPLR           +DWSIKINRKEK
Sbjct: 97   GTASTLTRAEVSGGGKKPYKQKKTGRARRGSMRTPLRPGGGVVFGPKPRDWSIKINRKEK 156

Query: 764  RLAISTALSSASVNTIVVEDFVDKFDKPKTKEFIEALKRWGLDPNEKSMFLLNEVSDNVK 585
            +LAISTA++SA+VNTIVVE+F DKF+KPKTKEFI ALKRWG+DP EKS+FL+ EVSDNV+
Sbjct: 157  KLAISTAVASAAVNTIVVEEFGDKFEKPKTKEFIAALKRWGIDPKEKSLFLMTEVSDNVR 216

Query: 584  LSSRNIGTVKMLTPRTLNLFDILNADKVVLTKTTVDYLNRMYGLDY 447
            LSSRNIGT+K+LTPRTLNLFDIL++DK+VLT T VDYLN  YG++Y
Sbjct: 217  LSSRNIGTLKLLTPRTLNLFDILDSDKLVLTPTAVDYLNERYGINY 262


>ref|XP_002309469.1| predicted protein [Populus trichocarpa] gi|222855445|gb|EEE92992.1|
            predicted protein [Populus trichocarpa]
          Length = 279

 Score =  335 bits (859), Expect = 1e-89
 Identities = 175/239 (73%), Positives = 196/239 (82%), Gaps = 6/239 (2%)
 Frame = -1

Query: 1145 LPKSPHQKSFKP---LKPLSIHAQLSTIPILSFEGEKIGETYLDLKSAPPETARAVVHRG 975
            +PK     + KP   LK LSI  Q++T+PILSF GEKIGETYLDLKSAPPETARAVVHRG
Sbjct: 23   IPKLTSLSTTKPQYSLKSLSISCQVATLPILSFTGEKIGETYLDLKSAPPETARAVVHRG 82

Query: 974  IITDQQNSRRGTASTLTRAEVRGGGKKPYPQKKTGRARRGSQRTPLRXXXXXXXXXXXKD 795
            IITDQQN RRGTASTLTR EVRGGG+KPYPQKKTGRARRGS R+PLR           +D
Sbjct: 83   IITDQQNKRRGTASTLTRGEVRGGGRKPYPQKKTGRARRGSMRSPLRPGGGVIFGPKPRD 142

Query: 794  WSIKINRKEKRLAISTALSSA---SVNTIVVEDFVDKFDKPKTKEFIEALKRWGLDPNEK 624
            WSIKINRKEKRLA+STALSSA   S + I VE+F DKF+KPKTKEFIEA+ RWGLDP EK
Sbjct: 143  WSIKINRKEKRLAMSTALSSAASESESVICVEEFGDKFEKPKTKEFIEAMNRWGLDPKEK 202

Query: 623  SMFLLNEVSDNVKLSSRNIGTVKMLTPRTLNLFDILNADKVVLTKTTVDYLNRMYGLDY 447
             MFL+ +VSDNV LSSRNIGT++MLTPRTLNLFDILN+DK+VLT  TVDYLN  YG+D+
Sbjct: 203  VMFLMMDVSDNVGLSSRNIGTLRMLTPRTLNLFDILNSDKLVLTPDTVDYLNGRYGVDF 261


>ref|XP_002525600.1| 50S ribosomal protein L4, putative [Ricinus communis]
            gi|223535036|gb|EEF36718.1| 50S ribosomal protein L4,
            putative [Ricinus communis]
          Length = 283

 Score =  323 bits (829), Expect = 4e-86
 Identities = 163/217 (75%), Positives = 185/217 (85%)
 Frame = -1

Query: 1100 LSIHAQLSTIPILSFEGEKIGETYLDLKSAPPETARAVVHRGIITDQQNSRRGTASTLTR 921
            LSI  Q+ST+PILSF GEKIGETYLDLK+APP+TARAVVHR IITDQQN RRGTASTLTR
Sbjct: 45   LSISCQVSTLPILSFTGEKIGETYLDLKTAPPDTARAVVHRAIITDQQNKRRGTASTLTR 104

Query: 920  AEVRGGGKKPYPQKKTGRARRGSQRTPLRXXXXXXXXXXXKDWSIKINRKEKRLAISTAL 741
            AEVRGGGKKPY QKKTGRARRGS RTPLR           +DWSIKIN+KEKRLAISTAL
Sbjct: 105  AEVRGGGKKPYQQKKTGRARRGSSRTPLRPGGGVIFGPKPRDWSIKINKKEKRLAISTAL 164

Query: 740  SSASVNTIVVEDFVDKFDKPKTKEFIEALKRWGLDPNEKSMFLLNEVSDNVKLSSRNIGT 561
             SA+ + + VE+F DKF+KPKTK+FIEA+KRWGLDP EK MFL+ +V+D+V LSSRNIGT
Sbjct: 165  CSATESMLCVEEFGDKFEKPKTKDFIEAMKRWGLDPKEKVMFLMMDVADSVGLSSRNIGT 224

Query: 560  VKMLTPRTLNLFDILNADKVVLTKTTVDYLNRMYGLD 450
            ++MLTPRTLNLFDILN+DK+VLT   VDYLN  YG+D
Sbjct: 225  LRMLTPRTLNLFDILNSDKLVLTPDAVDYLNGRYGVD 261


>sp|O80361.1|RK4_TOBAC RecName: Full=50S ribosomal protein L4, chloroplastic; AltName:
            Full=CL4; AltName: Full=R-protein L4; Flags: Precursor
            gi|3298439|dbj|BAA31510.1| chloroplast ribosomal protein
            L4 [Nicotiana tabacum]
          Length = 282

 Score =  312 bits (799), Expect = 1e-82
 Identities = 159/231 (68%), Positives = 192/231 (83%)
 Frame = -1

Query: 1148 ILPKSPHQKSFKPLKPLSIHAQLSTIPILSFEGEKIGETYLDLKSAPPETARAVVHRGII 969
            +L +SP Q S   +   +I ++++TIPILSF+G ++G T L+LKSAP +TARAVVHRG+ 
Sbjct: 25   LLFRSPKQLSVAAIA--TIRSEVATIPILSFDGAEVGSTTLNLKSAPLDTARAVVHRGLT 82

Query: 968  TDQQNSRRGTASTLTRAEVRGGGKKPYPQKKTGRARRGSQRTPLRXXXXXXXXXXXKDWS 789
            TD +N RRGTASTLTR+EVRGGG KPYPQKKTGRARRGS RTPLR           KDWS
Sbjct: 83   TDLRNQRRGTASTLTRSEVRGGGIKPYPQKKTGRARRGSNRTPLRPGGGVVFGPKPKDWS 142

Query: 788  IKINRKEKRLAISTALSSASVNTIVVEDFVDKFDKPKTKEFIEALKRWGLDPNEKSMFLL 609
            +KIN+KEKRLAISTALSSAS NTIVVE+F DKF+KPKTKEFI+ ++RWGLDP EKS+FL+
Sbjct: 143  VKINKKEKRLAISTALSSASENTIVVEEFNDKFEKPKTKEFIDLMRRWGLDPKEKSLFLM 202

Query: 608  NEVSDNVKLSSRNIGTVKMLTPRTLNLFDILNADKVVLTKTTVDYLNRMYG 456
             +VSDNV LSSRNIGT+KMLTPRTLNLFDIL+++K+VLTK+ VD+LN  YG
Sbjct: 203  TDVSDNVILSSRNIGTLKMLTPRTLNLFDILDSEKLVLTKSAVDFLNERYG 253