BLASTX nr result
ID: Coptis25_contig00006619
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis25_contig00006619
(978 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002266601.1| PREDICTED: ABC transporter C family member 3... 315 e-107
emb|CBI27547.3| unnamed protein product [Vitis vinifera] 315 e-107
ref|XP_002315633.1| multidrug resistance protein ABC transporter... 317 e-106
ref|XP_002312645.1| multidrug resistance protein ABC transporter... 311 e-104
ref|XP_003532715.1| PREDICTED: ABC transporter C family member 3... 308 e-103
>ref|XP_002266601.1| PREDICTED: ABC transporter C family member 3-like [Vitis vinifera]
Length = 1462
Score = 315 bits (808), Expect(2) = e-107
Identities = 153/222 (68%), Positives = 177/222 (79%)
Frame = +3
Query: 6 PSMAGLIATYGLSLNVIQGWVIWNICNVDNKMISVERILQFSSIQSEAPLTIVGCTPDPD 185
PS+AGL ATYGL+LNV+Q WVIWN+CNV+NKMISVERILQF+ I SEAPL I C P +
Sbjct: 1150 PSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERILQFTKIPSEAPLVIENCRPSLE 1209
Query: 186 WLMSGTIDIDNLHVQYSPSLRMILKGITCTFPXXXXXXXXXXXXXXXXXLIQTLFRVVEP 365
W +G ID+DNLHV+Y+P+L M+LKGITCTFP LIQ LFRVVEP
Sbjct: 1210 WPSNGRIDLDNLHVRYTPTLPMVLKGITCTFPGERKIGVVGRTGSGKSTLIQALFRVVEP 1269
Query: 366 SNGKTLIDGVDIGKLGLKDLRSRLSIVPQNPTLFEGTMRTNLDPLKQHSDTEIWEVLNKC 545
S G+ LIDGVDI K+GLKDLRSRLSI+PQ+PTLF+GTMRTNLDPL +HSD EIWEVLNKC
Sbjct: 1270 SEGQILIDGVDISKMGLKDLRSRLSIIPQDPTLFQGTMRTNLDPLGEHSDQEIWEVLNKC 1329
Query: 546 NLREIVRQDERLLDAPVATDGENWSVGQRQLICLARVLLSEK 671
L EI+ QD+ LL+A VA DGENWSVGQRQL+CLARVLL +
Sbjct: 1330 RLAEIIGQDKGLLNARVAEDGENWSVGQRQLVCLARVLLQRR 1371
Score = 100 bits (250), Expect(2) = e-107
Identities = 57/90 (63%), Positives = 62/90 (68%)
Frame = +1
Query: 667 RKFLVLXXXXXXXXXXXXNQIQKAIREATRSCTVITVAHRIPTVIDNYLVLLLEEGKIVE 846
RK LVL N IQK IRE T CTVITVAHRIPTVIDN LVL+L+EGK+VE
Sbjct: 1371 RKILVLDEATASVDTATDNLIQKTIREETSKCTVITVAHRIPTVIDNDLVLVLDEGKVVE 1430
Query: 847 YGSPYVLLKDHSSAFSKLVREFVKA*STSN 936
Y SP LLKD SSAFSKLV EF + S S+
Sbjct: 1431 YDSPPQLLKDSSSAFSKLVMEFRRRSSKSS 1460
>emb|CBI27547.3| unnamed protein product [Vitis vinifera]
Length = 1363
Score = 315 bits (808), Expect(2) = e-107
Identities = 153/222 (68%), Positives = 177/222 (79%)
Frame = +3
Query: 6 PSMAGLIATYGLSLNVIQGWVIWNICNVDNKMISVERILQFSSIQSEAPLTIVGCTPDPD 185
PS+AGL ATYGL+LNV+Q WVIWN+CNV+NKMISVERILQF+ I SEAPL I C P +
Sbjct: 1051 PSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERILQFTKIPSEAPLVIENCRPSLE 1110
Query: 186 WLMSGTIDIDNLHVQYSPSLRMILKGITCTFPXXXXXXXXXXXXXXXXXLIQTLFRVVEP 365
W +G ID+DNLHV+Y+P+L M+LKGITCTFP LIQ LFRVVEP
Sbjct: 1111 WPSNGRIDLDNLHVRYTPTLPMVLKGITCTFPGERKIGVVGRTGSGKSTLIQALFRVVEP 1170
Query: 366 SNGKTLIDGVDIGKLGLKDLRSRLSIVPQNPTLFEGTMRTNLDPLKQHSDTEIWEVLNKC 545
S G+ LIDGVDI K+GLKDLRSRLSI+PQ+PTLF+GTMRTNLDPL +HSD EIWEVLNKC
Sbjct: 1171 SEGQILIDGVDISKMGLKDLRSRLSIIPQDPTLFQGTMRTNLDPLGEHSDQEIWEVLNKC 1230
Query: 546 NLREIVRQDERLLDAPVATDGENWSVGQRQLICLARVLLSEK 671
L EI+ QD+ LL+A VA DGENWSVGQRQL+CLARVLL +
Sbjct: 1231 RLAEIIGQDKGLLNARVAEDGENWSVGQRQLVCLARVLLQRR 1272
Score = 100 bits (250), Expect(2) = e-107
Identities = 57/90 (63%), Positives = 62/90 (68%)
Frame = +1
Query: 667 RKFLVLXXXXXXXXXXXXNQIQKAIREATRSCTVITVAHRIPTVIDNYLVLLLEEGKIVE 846
RK LVL N IQK IRE T CTVITVAHRIPTVIDN LVL+L+EGK+VE
Sbjct: 1272 RKILVLDEATASVDTATDNLIQKTIREETSKCTVITVAHRIPTVIDNDLVLVLDEGKVVE 1331
Query: 847 YGSPYVLLKDHSSAFSKLVREFVKA*STSN 936
Y SP LLKD SSAFSKLV EF + S S+
Sbjct: 1332 YDSPPQLLKDSSSAFSKLVMEFRRRSSKSS 1361
>ref|XP_002315633.1| multidrug resistance protein ABC transporter family [Populus
trichocarpa] gi|222864673|gb|EEF01804.1| multidrug
resistance protein ABC transporter family [Populus
trichocarpa]
Length = 1044
Score = 317 bits (813), Expect(2) = e-106
Identities = 150/223 (67%), Positives = 181/223 (81%)
Frame = +3
Query: 3 DPSMAGLIATYGLSLNVIQGWVIWNICNVDNKMISVERILQFSSIQSEAPLTIVGCTPDP 182
+PS+AGL ATYGL+LNV+Q WVIWN+CNV+NKMISVERILQF++I SEAPL I C P P
Sbjct: 734 NPSLAGLAATYGLNLNVLQSWVIWNLCNVENKMISVERILQFTNIPSEAPLVIEDCGPKP 793
Query: 183 DWLMSGTIDIDNLHVQYSPSLRMILKGITCTFPXXXXXXXXXXXXXXXXXLIQTLFRVVE 362
+W + G I++ +LHVQY PSL M+LKGITCTFP LIQ LFRV+E
Sbjct: 794 EWPVDGRIELISLHVQYGPSLPMVLKGITCTFPGGKKIGVVGRTGSGKSTLIQALFRVIE 853
Query: 363 PSNGKTLIDGVDIGKLGLKDLRSRLSIVPQNPTLFEGTMRTNLDPLKQHSDTEIWEVLNK 542
PS G+ LIDG+DI K+GL+DLRSRL I+PQ+PTLF+GT+RTNLDPL+QHSD EIWEVLNK
Sbjct: 854 PSGGQILIDGLDISKIGLQDLRSRLGIIPQDPTLFQGTVRTNLDPLEQHSDQEIWEVLNK 913
Query: 543 CNLREIVRQDERLLDAPVATDGENWSVGQRQLICLARVLLSEK 671
C L + V+QD+RLLDAPVA DGENWSVGQRQL+CLARV+L ++
Sbjct: 914 CRLADTVKQDKRLLDAPVAEDGENWSVGQRQLVCLARVMLKKR 956
Score = 95.1 bits (235), Expect(2) = e-106
Identities = 50/84 (59%), Positives = 61/84 (72%)
Frame = +1
Query: 667 RKFLVLXXXXXXXXXXXXNQIQKAIREATRSCTVITVAHRIPTVIDNYLVLLLEEGKIVE 846
R+ LVL N IQ IRE T +CTVITVAHRIPTVIDN LVL+L++GK+VE
Sbjct: 956 RRILVLDEATASIDTATDNIIQGTIREETSTCTVITVAHRIPTVIDNDLVLVLDDGKVVE 1015
Query: 847 YGSPYVLLKDHSSAFSKLVREFVK 918
Y SP LL+D+SS+FSKLV EF++
Sbjct: 1016 YDSPVKLLEDNSSSFSKLVTEFLR 1039
>ref|XP_002312645.1| multidrug resistance protein ABC transporter family [Populus
trichocarpa] gi|222852465|gb|EEE90012.1| multidrug
resistance protein ABC transporter family [Populus
trichocarpa]
Length = 1361
Score = 311 bits (798), Expect(2) = e-104
Identities = 147/223 (65%), Positives = 179/223 (80%)
Frame = +3
Query: 3 DPSMAGLIATYGLSLNVIQGWVIWNICNVDNKMISVERILQFSSIQSEAPLTIVGCTPDP 182
DPS+AGL ATYGL+LNV+Q WVIWN+CNV+NKMISVERILQF++I SEAPL I C P P
Sbjct: 1054 DPSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERILQFTNIPSEAPLVIEDCRPKP 1113
Query: 183 DWLMSGTIDIDNLHVQYSPSLRMILKGITCTFPXXXXXXXXXXXXXXXXXLIQTLFRVVE 362
+W + G +++ L VQYSPSL +LKGITCTFP LIQ LFRV+E
Sbjct: 1114 EWPVDGRVELIGLDVQYSPSLPKVLKGITCTFPGGKKIGVVGRTGSGKSTLIQALFRVIE 1173
Query: 363 PSNGKTLIDGVDIGKLGLKDLRSRLSIVPQNPTLFEGTMRTNLDPLKQHSDTEIWEVLNK 542
PS G+ LIDG+DI K+GL+DLRS+L I+PQ+PTLF GT+RTNLDPL++HSD EIWEVLNK
Sbjct: 1174 PSGGQILIDGLDISKIGLRDLRSKLGIIPQDPTLFRGTVRTNLDPLEKHSDQEIWEVLNK 1233
Query: 543 CNLREIVRQDERLLDAPVATDGENWSVGQRQLICLARVLLSEK 671
C L +IV++D+RLLDAPV+ DGENWSVGQRQL+CLARVLL ++
Sbjct: 1234 CRLADIVKRDKRLLDAPVSEDGENWSVGQRQLVCLARVLLKKR 1276
Score = 95.9 bits (237), Expect(2) = e-104
Identities = 51/84 (60%), Positives = 60/84 (71%)
Frame = +1
Query: 667 RKFLVLXXXXXXXXXXXXNQIQKAIREATRSCTVITVAHRIPTVIDNYLVLLLEEGKIVE 846
R+ LVL N IQ IRE T CTVITVAHRIPTVIDN L+L+LE+GK+VE
Sbjct: 1276 RRILVLDEATASIDIETDNIIQGTIREETSRCTVITVAHRIPTVIDNDLILVLEDGKVVE 1335
Query: 847 YGSPYVLLKDHSSAFSKLVREFVK 918
Y SP LLKD+SS+FSKLV EF++
Sbjct: 1336 YDSPVKLLKDNSSSFSKLVIEFLR 1359
>ref|XP_003532715.1| PREDICTED: ABC transporter C family member 3-like [Glycine max]
Length = 1454
Score = 308 bits (790), Expect(2) = e-103
Identities = 144/223 (64%), Positives = 178/223 (79%)
Frame = +3
Query: 3 DPSMAGLIATYGLSLNVIQGWVIWNICNVDNKMISVERILQFSSIQSEAPLTIVGCTPDP 182
DPS+AGL+ATYGL+LNV+Q WVIWN+CNV+NKMISVERILQFSSI SEAPL I C P+P
Sbjct: 1139 DPSLAGLVATYGLNLNVLQAWVIWNLCNVENKMISVERILQFSSIPSEAPLIIQDCRPEP 1198
Query: 183 DWLMSGTIDIDNLHVQYSPSLRMILKGITCTFPXXXXXXXXXXXXXXXXXLIQTLFRVVE 362
+W G +++ NLH++Y P+ M+LKG+TC FP L+Q LFRVVE
Sbjct: 1199 EWPKEGKVELRNLHIRYDPAAPMVLKGVTCVFPAQKKIGVVGRTGSGKSTLVQALFRVVE 1258
Query: 363 PSNGKTLIDGVDIGKLGLKDLRSRLSIVPQNPTLFEGTMRTNLDPLKQHSDTEIWEVLNK 542
P G LIDGVDI K+GL+DLRS+L I+PQ+PTLF GT+RTNLDPL+QH+D E+WEVL+K
Sbjct: 1259 PLEGCILIDGVDISKIGLQDLRSKLGIIPQDPTLFLGTVRTNLDPLEQHADQELWEVLSK 1318
Query: 543 CNLREIVRQDERLLDAPVATDGENWSVGQRQLICLARVLLSEK 671
C+L EIVR+D RLLDAPVA +GENWSVGQRQL+CLAR+LL ++
Sbjct: 1319 CHLAEIVRRDPRLLDAPVAENGENWSVGQRQLVCLARLLLKKR 1361
Score = 92.4 bits (228), Expect(2) = e-103
Identities = 51/90 (56%), Positives = 61/90 (67%)
Frame = +1
Query: 667 RKFLVLXXXXXXXXXXXXNQIQKAIREATRSCTVITVAHRIPTVIDNYLVLLLEEGKIVE 846
R+ LVL N IQK IRE T CTVITVAHRIPTVIDN VL+L+EG IVE
Sbjct: 1361 RRILVLDEATASIDTATDNLIQKTIREETNGCTVITVAHRIPTVIDNDRVLVLDEGTIVE 1420
Query: 847 YGSPYVLLKDHSSAFSKLVREFVKA*STSN 936
Y P LL+++SS+FSKLV EF++ S S+
Sbjct: 1421 YDEPAQLLQNNSSSFSKLVSEFLRRSSQSS 1450