BLASTX nr result
ID: Coptis25_contig00006601
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis25_contig00006601
(1459 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002277269.1| PREDICTED: putative E3 ubiquitin-protein lig... 349 1e-93
ref|XP_002516824.1| conserved hypothetical protein [Ricinus comm... 335 2e-89
ref|XP_004159841.1| PREDICTED: LOW QUALITY PROTEIN: putative E3 ... 331 3e-88
ref|XP_004134170.1| PREDICTED: putative E3 ubiquitin-protein lig... 331 3e-88
ref|XP_003542905.1| PREDICTED: putative E3 ubiquitin-protein lig... 300 5e-79
>ref|XP_002277269.1| PREDICTED: putative E3 ubiquitin-protein ligase RF298-like [Vitis
vinifera]
Length = 893
Score = 349 bits (895), Expect = 1e-93
Identities = 220/495 (44%), Positives = 293/495 (59%), Gaps = 9/495 (1%)
Frame = +1
Query: 1 RSAIKLIATSGYSEDVAAKTVLRADLCYGFKDTVSNIVDNTLAILQAGKEVYASKDNFFE 180
+SAIK I GYSE+VA K VLR+ LCYG KDTVSNIVDNTLA L+ G+E+ S++++F+
Sbjct: 142 KSAIKKIVACGYSEEVATKAVLRSGLCYGCKDTVSNIVDNTLAFLRNGQEIDPSREHYFD 201
Query: 181 NLEQLENYLLAEMVCVLTEVDPRLNTGDAMWCLLINDMNVSQXXXXXXXXXXXXXN-DEV 357
+L+QLE Y+LAE+VCVL EV P +TGDAMWCLLI DMNVS + D
Sbjct: 202 DLQQLEKYILAELVCVLREVRPFFSTGDAMWCLLICDMNVSHACAMDGDSFSSIVSGDGA 261
Query: 358 PGGSSSGSTLPQLNLKCNSAEDNLXXXXXXXXXXXXXNGTQSEMPAVKGIPNLPNPRKSV 537
GSSS S PQ + S+E NL + +QSE P G+PNL P+ S+
Sbjct: 262 SNGSSSTSGQPQSKTEAKSSELNLPNPCNPVHSIPCAHSSQSETPIASGVPNLAKPKNSL 321
Query: 538 VSEGRLPEKASPISTSRSMEMTFSVIEEHLQAKYQSFSSSAEKPVG-GRKAQSSGAKRET 714
V G + EK +TS + + +FSV S S++ E+ G RK S G KRE+
Sbjct: 322 VLNGLVSEKDGLNNTSDTTDKSFSVTG-------TSQSAAPEEKFGLSRKVHSGGTKRES 374
Query: 715 IVRHK-IQVDRNYR-----GTMRTGKLSSFGGLFLDKKLKAVSDSIGKVPKNIPMTIRKF 876
++R K + +++NYR G+ RT KLS G LDKKLK+VSDS G KN + I K
Sbjct: 375 MLRQKSLHLEKNYRTYGCKGSSRTAKLSGLGSYMLDKKLKSVSDSTGVNLKNASLKISKA 434
Query: 877 MESELSHATVTQRRPVKDKTSASTPKDGNTPAVSPKASMELFPTVLSKAKTEPSPTVLPM 1056
M ++ P + +P G + S ++E T+ S KT SP+ LP
Sbjct: 435 MGVDV---------PQDNGNHNLSPNSGLSS--SAAFNLETVNTIGSLPKTN-SPSALPP 482
Query: 1057 ADTRSSPAVLSKTKAEVSTSMTSKS-EAPSGLTNSSEGVPDYSSFGIPYDKTTGKWMPND 1233
+T P + S E+S S+T+KS AP L+ ++E + S GIPYDK+ G+W+P D
Sbjct: 483 VNT---PPIPSGADTELSLSLTTKSNSAPVPLSCNAE-TSNCSYTGIPYDKSLGQWVPQD 538
Query: 1234 KQDEVILKLAVRAQDLRNQLGEWTDWANQKVLQATRRLSKDKAELKVLRQXXXXXXXXXX 1413
K+DE+ILKL R ++L+NQL EWT+WANQKV+QA RRL KDKAELK LRQ
Sbjct: 539 KKDEMILKLVPRVRELQNQLQEWTEWANQKVMQAARRLGKDKAELKTLRQEKEEVERLKK 598
Query: 1414 XRQSLEENTIKKLSE 1458
+Q+LE+NT KKLSE
Sbjct: 599 EKQTLEDNTAKKLSE 613
>ref|XP_002516824.1| conserved hypothetical protein [Ricinus communis]
gi|223543912|gb|EEF45438.1| conserved hypothetical
protein [Ricinus communis]
Length = 894
Score = 335 bits (859), Expect = 2e-89
Identities = 212/492 (43%), Positives = 284/492 (57%), Gaps = 6/492 (1%)
Frame = +1
Query: 1 RSAIKLIATSGYSEDVAAKTVLRADLCYGFKDTVSNIVDNTLAILQAGKEVYASKDNFFE 180
+SAIK I GY+E+VA K VLR+ LCYG KDTVSNIVDNTLA L+ G+E+ S+D+ FE
Sbjct: 144 KSAIKKIVACGYTEEVATKAVLRSGLCYGCKDTVSNIVDNTLAFLRNGQEIDPSRDHCFE 203
Query: 181 NLEQLENYLLAEMVCVLTEVDPRLNTGDAMWCLLINDMNVSQXXXXXXXXXXXXXNDEVP 360
+L+QLE Y+LAE+VCVL EV P +TGDAMWCLLI DMNVS D
Sbjct: 204 DLQQLEKYILAELVCVLREVRPFFSTGDAMWCLLICDMNVSHACAMDGDPLSGFAGDGTS 263
Query: 361 GGSSSGSTLPQLNLKCNSAEDNLXXXXXXXXXXXXXNGTQSEMPAV-KGIPNLPNPRKSV 537
G+SS S PQ+ K S+E NL +QSE P + +PN+ P+ SV
Sbjct: 264 NGTSSTSNQPQIESK--SSELNLPNPCKSEPSVTC---SQSEAPNIMTRVPNISKPKNSV 318
Query: 538 VSEGRLPEKASPISTSRSMEMTFSVIEEHLQAKYQSFSSSAEKPVGGRKAQSSGAKRETI 717
G + EK ST S + +FSV A EK + RK S+ KRE I
Sbjct: 319 AVSGLVTEKDGSNSTFDSADKSFSV------AGTSQSPVVEEKLIVSRKVHSNSTKREYI 372
Query: 718 VRHK-IQVDRNYR----GTMRTGKLSSFGGLFLDKKLKAVSDSIGKVPKNIPMTIRKFME 882
+R K + +++ YR R GKLS GGL LDKKLK+VS+S + KN + + K M
Sbjct: 373 LRQKSLHLEKGYRTYGPKGSRAGKLSGLGGLILDKKLKSVSESAVNI-KNASLRLSKVMG 431
Query: 883 SELSHATVTQRRPVKDKTSASTPKDGNTPAVSPKASMELFPTVLSKAKTEPSPTVLPMAD 1062
++S +Q + T +S+P N + + FP +++ P T P
Sbjct: 432 VDVSQDNASQN--LSSNTRSSSPASFN---LETSGTTSAFPKTNNQSAL-PVVTKPPALT 485
Query: 1063 TRSSPAVLSKTKAEVSTSMTSKSEAPSGLTNSSEGVPDYSSFGIPYDKTTGKWMPNDKQD 1242
++P VLS T E+S S+ +KS + S +S+ + GIPYDK+ +W+P DK+D
Sbjct: 486 AVNTPPVLSATDTELSLSLPAKSNSTSVPGDSNAEATSCNFSGIPYDKSLAQWVPRDKKD 545
Query: 1243 EVILKLAVRAQDLRNQLGEWTDWANQKVLQATRRLSKDKAELKVLRQXXXXXXXXXXXRQ 1422
E+I+KL RA++L+NQL EWT+WANQKV+QA RRLSKDKAELK LRQ +Q
Sbjct: 546 EMIMKLVPRARELQNQLQEWTEWANQKVMQAARRLSKDKAELKSLRQEKEEVERLKKEKQ 605
Query: 1423 SLEENTIKKLSE 1458
+LEENT+KKL+E
Sbjct: 606 TLEENTMKKLTE 617
>ref|XP_004159841.1| PREDICTED: LOW QUALITY PROTEIN: putative E3 ubiquitin-protein ligase
RF298-like [Cucumis sativus]
Length = 901
Score = 331 bits (849), Expect = 3e-88
Identities = 205/494 (41%), Positives = 279/494 (56%), Gaps = 8/494 (1%)
Frame = +1
Query: 1 RSAIKLIATSGYSEDVAAKTVLRADLCYGFKDTVSNIVDNTLAILQAGKEVYASKDNFFE 180
+ AIK I SGY+E+VA K V R+ +C+G KDTVSN+VDNTLA L+ G+E+ S++++FE
Sbjct: 143 KGAIKKIVASGYTEEVAIKAVSRSGICFGGKDTVSNVVDNTLAFLRRGQEIDHSREHYFE 202
Query: 181 NLEQLENYLLAEMVCVLTEVDPRLNTGDAMWCLLINDMNVSQXXXXXXXXXXXXXNDEVP 360
+L+QLE Y+LAE+VCVL E+ P +TGDAMWCLLI+DM+V+ D
Sbjct: 203 DLQQLEKYILAELVCVLREIRPFFSTGDAMWCLLISDMSVALACAMDSDPCNALVCDGTS 262
Query: 361 GGSSSGSTLPQLNLKCNSAEDNLXXXXXXXXXXXXXNGTQSEMPAVKGIPNLPNPRKSVV 540
SSS +T+PQL + S+E NL +G+Q + PA G+P++ P+ +
Sbjct: 263 NESSS-NTIPQLKAEVKSSEMNLPKPVKPISPISCAHGSQYDGPATVGVPSISKPKDPLF 321
Query: 541 SEGRLPEKASPISTSRSMEMTFSVIEEHLQAKYQSFSS-SAEKPVGGRKAQSSGAKRETI 717
S G P+S TF V+EE S +S S EK RK S+ KRE +
Sbjct: 322 SSG-------PLSEKELQNSTFDVVEESFSVAVNSQTSVSEEKIESSRKVHSNITKREYM 374
Query: 718 VRHK-IQVDRNYR-----GTMRTGKLSSFGGLFLDKKLKAVSDSIGKVPKNIPMTIRKFM 879
+R K + VD+N+R G+ R GKL+ GGL LDKKLK+VS S KN + I K M
Sbjct: 375 LRQKSLHVDKNFRTYGAKGSSRAGKLTGLGGLMLDKKLKSVSGSTAVNFKNASLKISKAM 434
Query: 880 ESELSHATVTQRRPVKDKTSASTPKD-GNTPAVSPKASMELFPTVLSKAKTEPSPTVLPM 1056
+++ + D S+S P + N VSP + L S SP LP
Sbjct: 435 GIDVAQDNGSHNLSTMDIPSSSLPFNLENINTVSPFSKTNL----PSSMPAPSSPPALPA 490
Query: 1057 ADTRSSPAVLSKTKAEVSTSMTSKSEAPSGLTNSSEGVPDYSSFGIPYDKTTGKWMPNDK 1236
+T S+P T ++S S+ +KS PS N + S P +K G+W P DK
Sbjct: 491 LNTSSAPPT---TDIDLSLSLPAKSNQPSVPFNCNPESSTSSFVEKPQEKFIGQWFPRDK 547
Query: 1237 QDEVILKLAVRAQDLRNQLGEWTDWANQKVLQATRRLSKDKAELKVLRQXXXXXXXXXXX 1416
+DE++L L R Q+L+NQL EWT WANQKV+QA RRLSKDKAELK L+Q
Sbjct: 548 KDEMVLNLLPRVQELQNQLQEWTQWANQKVMQAARRLSKDKAELKALKQEKEEVERLKKE 607
Query: 1417 RQSLEENTIKKLSE 1458
+Q+LEENT+KKLSE
Sbjct: 608 KQTLEENTMKKLSE 621
>ref|XP_004134170.1| PREDICTED: putative E3 ubiquitin-protein ligase RF298-like [Cucumis
sativus]
Length = 901
Score = 331 bits (849), Expect = 3e-88
Identities = 205/494 (41%), Positives = 279/494 (56%), Gaps = 8/494 (1%)
Frame = +1
Query: 1 RSAIKLIATSGYSEDVAAKTVLRADLCYGFKDTVSNIVDNTLAILQAGKEVYASKDNFFE 180
+ AIK I SGY+E+VA K V R+ +C+G KDTVSN+VDNTLA L+ G+E+ S++++FE
Sbjct: 143 KGAIKKIVASGYTEEVAIKAVSRSGICFGGKDTVSNVVDNTLAFLRRGQEIDHSREHYFE 202
Query: 181 NLEQLENYLLAEMVCVLTEVDPRLNTGDAMWCLLINDMNVSQXXXXXXXXXXXXXNDEVP 360
+L+QLE Y+LAE+VCVL E+ P +TGDAMWCLLI+DM+V+ D
Sbjct: 203 DLQQLEKYILAELVCVLREIRPFFSTGDAMWCLLISDMSVALACAMDSDPCNALVCDGTS 262
Query: 361 GGSSSGSTLPQLNLKCNSAEDNLXXXXXXXXXXXXXNGTQSEMPAVKGIPNLPNPRKSVV 540
SSS +T+PQL + S+E NL +G+Q + PA G+P++ P+ +
Sbjct: 263 NESSS-NTIPQLKAEVKSSEMNLPKPVKPISPISCAHGSQYDGPATVGVPSISKPKDPLF 321
Query: 541 SEGRLPEKASPISTSRSMEMTFSVIEEHLQAKYQSFSS-SAEKPVGGRKAQSSGAKRETI 717
S G P+S TF V+EE S +S S EK RK S+ KRE +
Sbjct: 322 SSG-------PLSEKELQNSTFDVVEESFSVAVNSQTSVSEEKIESSRKVHSNITKREYM 374
Query: 718 VRHK-IQVDRNYR-----GTMRTGKLSSFGGLFLDKKLKAVSDSIGKVPKNIPMTIRKFM 879
+R K + VD+N+R G+ R GKL+ GGL LDKKLK+VS S KN + I K M
Sbjct: 375 LRQKSLHVDKNFRTYGAKGSSRAGKLTGLGGLMLDKKLKSVSGSTAVNFKNASLKISKAM 434
Query: 880 ESELSHATVTQRRPVKDKTSASTPKD-GNTPAVSPKASMELFPTVLSKAKTEPSPTVLPM 1056
+++ + D S+S P + N VSP + L S SP LP
Sbjct: 435 GIDVAQDNGSHNLSTMDIPSSSLPFNLENINTVSPFSKTNL----PSSMPAPSSPPALPA 490
Query: 1057 ADTRSSPAVLSKTKAEVSTSMTSKSEAPSGLTNSSEGVPDYSSFGIPYDKTTGKWMPNDK 1236
+T S+P T ++S S+ +KS PS N + S P +K G+W P DK
Sbjct: 491 LNTSSAPPT---TDIDLSLSLPAKSNQPSVPFNCNPESSTSSFVEKPQEKFIGQWFPRDK 547
Query: 1237 QDEVILKLAVRAQDLRNQLGEWTDWANQKVLQATRRLSKDKAELKVLRQXXXXXXXXXXX 1416
+DE++L L R Q+L+NQL EWT WANQKV+QA RRLSKDKAELK L+Q
Sbjct: 548 KDEMVLNLLPRVQELQNQLQEWTQWANQKVMQAARRLSKDKAELKALKQEKEEVERLKKE 607
Query: 1417 RQSLEENTIKKLSE 1458
+Q+LEENT+KKLSE
Sbjct: 608 KQTLEENTMKKLSE 621
>ref|XP_003542905.1| PREDICTED: putative E3 ubiquitin-protein ligase RF298-like [Glycine
max]
Length = 883
Score = 300 bits (769), Expect = 5e-79
Identities = 195/493 (39%), Positives = 270/493 (54%), Gaps = 7/493 (1%)
Frame = +1
Query: 1 RSAIKLIATSGYSEDVAAKTVLRADLCYGFKDTVSNIVDNTLAILQAGKEVYASKDNFFE 180
+SA+K I GY EDVA K +LR+ +CYG KD VSN+VD LA L+ G+E+ S++++FE
Sbjct: 139 KSAVKKIVACGYIEDVATKAILRSGICYGCKDAVSNVVDKGLAFLRNGQEIDPSREHYFE 198
Query: 181 NLEQLENYLLAEMVCVLTEVDPRLNTGDAMWCLLINDMNVSQXXXXXXXXXXXXXNDEVP 360
+L QLE Y+LAE+VCVL EV P +TGDAMW LLI DMNVS +D +
Sbjct: 199 DLVQLEKYILAELVCVLREVRPLFSTGDAMWRLLICDMNVSLACAMDDDPSSSLGSDGID 258
Query: 361 GGSSSGSTLPQLNLKCNSAEDNLXXXXXXXXXXXXXNGTQSEMPAVKGIPNLPNPRKSVV 540
G SS T PQL L+ E +G+Q E +V G L +KS +
Sbjct: 259 DGCSSVQTEPQLKLETKGPE--------LSPCKSISSGSQPEKSSVAGNTGLDKSKKSQI 310
Query: 541 SEGRLPEKASPISTSRSMEMTFSVIEEHLQAKYQSFSSSAEKPVGG-RKAQSSGAKRETI 717
G ++A+ I++ S S E+ G RK SS KR+ I
Sbjct: 311 LVGPSGKEAANSGCE--------FIDKSSSTSGTSQSPLVEEKCGSVRKVHSSSNKRDYI 362
Query: 718 VRHK-IQVDRNYR-----GTMRTGKLSSFGGLFLDKKLKAVSDSIGKVPKNIPMTIRKFM 879
+R K ++++YR G+ R G+L+ GL LDKKLK+VS+S K+ + I K +
Sbjct: 363 LRQKSFHMEKSYRTYGPKGSSRGGRLNGLNGLILDKKLKSVSESTTINLKSASINISKAV 422
Query: 880 ESELSHATVTQRRPVKDKTSASTPKDGNTPAVSPKASMELFPTVLSKAKTEPSPTVLPMA 1059
+ VTQ D +S DG P+ S++ TV T S
Sbjct: 423 GVD-----VTQDNLNADFSS----NDG--PSTPTAFSLDSTVTVSQSTNTLSSVHEANAI 471
Query: 1060 DTRSSPAVLSKTKAEVSTSMTSKSEAPSGLTNSSEGVPDYSSFGIPYDKTTGKWMPNDKQ 1239
SP VLS T ++S S++S S++P+ + P+ S GIP+D++ GKW+P D++
Sbjct: 472 PAVGSPNVLSATDTDLSLSLSSNSKSPTTTVRCNNEAPNSSCMGIPHDRSLGKWIPQDRK 531
Query: 1240 DEVILKLAVRAQDLRNQLGEWTDWANQKVLQATRRLSKDKAELKVLRQXXXXXXXXXXXR 1419
DE+ILKL R ++L+NQL EWT+WANQKV+QA RRLSKD+AELK LRQ +
Sbjct: 532 DEMILKLVPRVRELQNQLQEWTEWANQKVMQAARRLSKDRAELKTLRQEKDEVERLKKEK 591
Query: 1420 QSLEENTIKKLSE 1458
QSLEENT+KK+SE
Sbjct: 592 QSLEENTMKKISE 604