BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00006455
         (1464 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002284795.1| PREDICTED: F-box protein SKIP23-like [Vitis ...   130   1e-27
emb|CAN69116.1| hypothetical protein VITISV_031843 [Vitis vinifera]   129   2e-27
ref|XP_003523538.1| PREDICTED: F-box protein SKIP23-like [Glycin...   117   6e-24
ref|XP_002510618.1| ubiquitin-protein ligase, putative [Ricinus ...   113   1e-22
ref|XP_004145529.1| PREDICTED: F-box protein SKIP23-like [Cucumi...    98   6e-18

>ref|XP_002284795.1| PREDICTED: F-box protein SKIP23-like [Vitis vinifera]
          Length = 389

 Score =  130 bits (326), Expect = 1e-27
 Identities = 114/418 (27%), Positives = 181/418 (43%), Gaps = 30/418 (7%)
 Frame = +2

Query: 230  DLIRFSCVCPTWRCVSASEISNRRYRLPWLILPNEFESNSNEKDGSSRDLFLGYGDMYAR 409
            D +RF  VC  WR        +   +LPWL+LP                         ++
Sbjct: 24   DYVRFRAVCHNWRASVPKTPHHLPTQLPWLMLPQ------------------------SQ 59

Query: 410  MFHMHCKQDTYYCDGLLSFYSVLERKIYRVETP---HGHRICGTSFGWLIIIGENSDMKL 580
              H H             F+S+   K + ++ P   H  R  G+S GWL+I+ E  ++ L
Sbjct: 60   PHHTH-----------RPFFSLSLNKFHFLQLPEASHRRRRRGSSHGWLLILDEAPEIFL 108

Query: 581  FHPFTGKVLDLPPLQVSNNALRYKYRLETGILYNATMNAEECYADYIRNAH----KDEVV 748
             +P T   + LPPL    N +R+ +  + G  Y    ++ + Y   ++       K  ++
Sbjct: 109  LNPLTRSKVHLPPLSTFPNVVRFNFA-DVGREYALRTSSGDVYTRSLKKMRDSFIKKTIL 167

Query: 749  ASCGSDSSNSICHPPIVLNIPLHLGKIVHKQLHFTRPGKDDSWIAIESERGNHYDDLIYF 928
            +S  ++ S+ I    ++LN    L  +  K         DDSW  +E  + ++ +D+I+ 
Sbjct: 168  SSSPANGSDFIA--VVILNQTGDLA-LCRKS--------DDSWTFLEDAQ-SYAEDVIFH 215

Query: 929  NGEYYAXXXXXXXXXXXXXXXYSMPTTSLVASSNKFVFSRDSFYLVATSSDLLKVTRILD 1108
             G +YA                S P  S++    +F    D  YLV +  +LL VTR LD
Sbjct: 216  RGLFYAVNKYGSIAVCDVSG--SSPRVSIIEMPQQF--GGDLQYLVESGEELLLVTRYLD 271

Query: 1109 D-----------FNATQRFLVQKLDFAEAKWLEVDSLTNCALFVGVNDSFSVVASEFPGC 1255
                           T RF V +LD    +W  V SL + ALF+G N S S+ + +FPGC
Sbjct: 272  LTYDVEPDQTSLIYRTTRFQVCRLDLKAPRWEVVSSLGDRALFLGENLSLSLSSVDFPGC 331

Query: 1256 KENCIYF--------FTG----EDKGVFNLQDGTIQTICPSDSKFISPQPIRFSANPC 1393
            K NCIY+        + G    +D G+FNL+DG+I+ +  S  +   P P+  + NPC
Sbjct: 332  KGNCIYYTDDYSEDNYDGIGGEQDLGIFNLEDGSIEPLPCSHFRIRWPPPLWVTPNPC 389


>emb|CAN69116.1| hypothetical protein VITISV_031843 [Vitis vinifera]
          Length = 389

 Score =  129 bits (324), Expect = 2e-27
 Identities = 114/418 (27%), Positives = 181/418 (43%), Gaps = 30/418 (7%)
 Frame = +2

Query: 230  DLIRFSCVCPTWRCVSASEISNRRYRLPWLILPNEFESNSNEKDGSSRDLFLGYGDMYAR 409
            D +RF  VC  WR        +   +LPWL+LP                         ++
Sbjct: 24   DYVRFRAVCHNWRASVPKTPHHLPTQLPWLMLPQ------------------------SQ 59

Query: 410  MFHMHCKQDTYYCDGLLSFYSVLERKIYRVETP---HGHRICGTSFGWLIIIGENSDMKL 580
              H H             F+S+   K + ++ P   H  R  G+S GWL+I+ E  ++ L
Sbjct: 60   PHHTH-----------RPFFSLSLNKFHFLQLPEASHRRRRRGSSHGWLLILDEAPEIFL 108

Query: 581  FHPFTGKVLDLPPLQVSNNALRYKYRLETGILYNATMNAEECYADYIRNAH----KDEVV 748
             +P T   + LPPL    N +R+ +  + G  Y    ++ + Y   ++       K  ++
Sbjct: 109  LNPLTRSKVHLPPLSTFPNVVRFNFA-DVGREYALRTSSGDVYTRSLKKMRDSFIKKTIL 167

Query: 749  ASCGSDSSNSICHPPIVLNIPLHLGKIVHKQLHFTRPGKDDSWIAIESERGNHYDDLIYF 928
            +S  ++ S+ I    ++LN    L  +  K         DDSW  +E  + ++ +D+I+ 
Sbjct: 168  SSSPANGSDFIA--VVILNQTGDLA-LCRKS--------DDSWTFLEDAQ-SYSEDVIFH 215

Query: 929  NGEYYAXXXXXXXXXXXXXXXYSMPTTSLVASSNKFVFSRDSFYLVATSSDLLKVTRILD 1108
             G +YA                S P  S++    +F    D  YLV +  +LL VTR LD
Sbjct: 216  RGLFYAVNKYGSIAVCDVSG--SSPRVSIIEMPQQF--GGDLQYLVESGEELLLVTRYLD 271

Query: 1109 D-----------FNATQRFLVQKLDFAEAKWLEVDSLTNCALFVGVNDSFSVVASEFPGC 1255
                           T RF V +LD    +W  V SL + ALF+G N S S+ + +FPGC
Sbjct: 272  LTYDVEXDQTSLIYRTTRFQVCRLDSKAPRWEVVSSLGDRALFLGENLSLSLSSVDFPGC 331

Query: 1256 KENCIYF--------FTG----EDKGVFNLQDGTIQTICPSDSKFISPQPIRFSANPC 1393
            K NCIY+        + G    +D G+FNL+DG+I+ +  S  +   P P+  + NPC
Sbjct: 332  KGNCIYYTDDYSEDNYDGIGGEQDLGIFNLEDGSIEPLPCSHFRIRWPPPLWVTPNPC 389


>ref|XP_003523538.1| PREDICTED: F-box protein SKIP23-like [Glycine max]
          Length = 393

 Score =  117 bits (294), Expect = 6e-24
 Identities = 116/422 (27%), Positives = 171/422 (40%), Gaps = 33/422 (7%)
 Frame = +2

Query: 227  LDLIRFSCVCPTWRCVSASEISNRRYRLPWLILPNEFESNSNEKDGSSRDLFLGYGDMYA 406
            +D +RF  VC +WR        +   +LPWL+L              SR  F    D+  
Sbjct: 24   VDYLRFRSVCRSWRSSVPKIPLHLPPQLPWLML--------------SRRAFF---DLSL 66

Query: 407  RMFHMHCKQDTYYCDGLLSFYSVLERKIYRVETPHGHRICGTSFGWLIIIGENSDMKLFH 586
               H+   Q +                       H  RICG+S GWL+++ E   ++L +
Sbjct: 67   NKTHLLNPQPS-----------------------HRTRICGSSHGWLVMLDETPQIRLLN 103

Query: 587  PFTGKVLDLPPLQVSNNALRYKYRLETGILYNATMNAEECYADYIR---NAHKDEVVASC 757
            P T     LPPL    N + + +    G  Y         YA  +R   N+   +VV S 
Sbjct: 104  PLTRATRPLPPLHAFPNVVAFDHA-NVGREYLIQNPYGGLYAFNLRQMCNSFLGKVVLSA 162

Query: 758  GSDSSNSICHPPIVLNIPLHLGKIVHKQLHFTRPGKDDSWIAI--ESERGNHYDDLIYFN 931
                ++      IV              L F R G D SWI +  E E  N ++D++ +N
Sbjct: 163  SPTLNDDFAALAIV----------GQNNLAFCRNGYD-SWIFLNGEEEEMNCWEDVVNYN 211

Query: 932  GEYYAXXXXXXXXXXXXXXXYSMPTTSLVASSNKFVFSRDSFYLVATSSDLLKVTRILD- 1108
            G ++A                  P  S++ ++  F F+ D  Y V ++ D+L + R+LD 
Sbjct: 212  GLFFAVSKGGTIAVCDAGEGCFPPRVSIIQTTTPFGFAGDIHYAVFSAGDMLLLIRVLDQ 271

Query: 1109 DFN-----------ATQRFLVQKLDFAEAKWLEVDSLTNCALFVGVNDSFSVVASEFPGC 1255
            DF+            T  F V K+++    W  V++L    LFVG N S S  AS+F GC
Sbjct: 272  DFSDHAGEESDLVYRTVGFEVFKMNWGLLTWQRVETLGERVLFVGGNSSLSFCASDFVGC 331

Query: 1256 KENCIYFFTG------------EDKGVFNLQDGTIQTI-C---PSDSKFISPQPIRFSAN 1387
              +CIYF                D GVF L+D +I+ + C    S S+   P PI  S N
Sbjct: 332  SADCIYFTDDYSESNDDDACGKHDLGVFRLRDKSIEPLPCFNQNSCSRLRWPLPIWVSPN 391

Query: 1388 PC 1393
            PC
Sbjct: 392  PC 393


>ref|XP_002510618.1| ubiquitin-protein ligase, putative [Ricinus communis]
            gi|223551319|gb|EEF52805.1| ubiquitin-protein ligase,
            putative [Ricinus communis]
          Length = 398

 Score =  113 bits (282), Expect = 1e-22
 Identities = 119/424 (28%), Positives = 173/424 (40%), Gaps = 36/424 (8%)
 Frame = +2

Query: 230  DLIRFSCVCPTWRCVSASEISNRRYRLPWLILPNEFESNSNEKDGSSRDLFLGYGDMYAR 409
            D +    VC  WR       ++   +LPWL+LP   +S SN+    SR  F     +   
Sbjct: 25   DYLYSRAVCHAWRFSIPKTPNHLPPQLPWLMLPQS-QSQSNQ----SRRAFFS---LSTN 76

Query: 410  MFHMHCKQDTYYCDGLLSFYSVLERKIYRVETPHGHRICGTSFGWLIIIGENSDMKLFHP 589
             FH             L+   V  RK          R CG+S GWL+I+ +   + L +P
Sbjct: 77   KFHF------------LNLPEVSYRK----------RHCGSSHGWLMILDDTPTILLINP 114

Query: 590  FTGKVLDLPPLQVSNNALRYKYRLETGILYNATMNAEECYADYIRNAHKDEVVASCGSDS 769
             T   L LPPL    N + + Y  + G  Y             +RN   + V  S     
Sbjct: 115  LTRAKLSLPPLSSFPNVISFNYS-DIGREYA------------LRNLLGERVTVSL-RQM 160

Query: 770  SNSICHPPIVLNIPLHLGKIV-------HKQLHFTRPGKDDSWIAIESERGNHYDDLIYF 928
             +S     ++ + PL     V          L + R G D SW  +E+ R +  +D+I+ 
Sbjct: 161  RDSFIRKVVLSSSPLKDNNFVVIAILNQTDDLAYCRNG-DKSWSLVENAR-SFCEDVIFV 218

Query: 929  NGEYYAXXXXXXXXXXXXXXXYSMPTTSLVASSNKFVFSRDSFYLVATSSDLLKVTRILD 1108
            NG +YA                  P  S + +  +     D  YLV +  +LL VTR LD
Sbjct: 219  NGMFYAVNKAGQIVICDISS--DSPRVSFMETPRQA--GGDMQYLVNSGDELLLVTRYLD 274

Query: 1109 ---DFN----------ATQRFLVQKLDFAEAKWLEVDSLTNCALFVGVNDSFSVVASEFP 1249
               +F+           T RF V +LD+   +WL + +L + ALF+G N S S+ A++F 
Sbjct: 275  LEYEFDHPDMEPHLIYRTIRFEVFRLDWNGPQWLRMSTLGDKALFIGENSSLSLSATDFS 334

Query: 1250 GCKENCIYF------------FTGEDKGVFNLQDGTIQTICPSDSKFISP----QPIRFS 1381
            GC  NCIY+            F   D G+F L D TI+ +      F SP     P+  S
Sbjct: 335  GCMGNCIYYTDDYLDANYDGHFGDHDLGIFKLCDETIEPLPCYPRNFTSPLQWSPPLWVS 394

Query: 1382 ANPC 1393
             NPC
Sbjct: 395  PNPC 398


>ref|XP_004145529.1| PREDICTED: F-box protein SKIP23-like [Cucumis sativus]
            gi|449485151|ref|XP_004157083.1| PREDICTED: F-box protein
            SKIP23-like [Cucumis sativus]
          Length = 392

 Score = 97.8 bits (242), Expect = 6e-18
 Identities = 116/426 (27%), Positives = 174/426 (40%), Gaps = 38/426 (8%)
 Frame = +2

Query: 230  DLIRFSCVCPTWRCVSASEISNRRY-RLPWLILPNEFESNSNEKDGSSRDLFLGYGDMYA 406
            D +RF  VC  WR  S  +I +R   +LP LI+P                          
Sbjct: 24   DYLRFRVVCWNWR-FSVPKIPHRLPPQLPCLIIP-------------------------- 56

Query: 407  RMFHMHCKQDTYYCDGLLSFYSVLERKIYRVETPHGHRICGTSFGWLIIIGENSDMKLFH 586
             ++H +C+     C GL +F       +Y  E     R CG+S GWL I+ E   + L +
Sbjct: 57   -LYH-NCR-----C-GLFNFSDNKIHFLYLPEISLRKRPCGSSHGWLTIVDETPPILLLN 108

Query: 587  PFTGKVLDLPPLQVSNNALRYKY---------RLETGILYNATMNAEECYADYIRNAHKD 739
            PFT   L LPPL    N + + Y         R  TG +Y   +         +R++   
Sbjct: 109  PFTRAKLWLPPLSTFPNVVSFDYSRVGREYLIRTPTGHIYTRNLR-------QMRDSFVK 161

Query: 740  EVVASCGSDSSNSICHPPIVLNIPLHLGKIVHKQLHFTRPGKDDSWIAIESERGNHYDDL 919
            ++V S    + N      + + I  H G      L F R G   SW  ++ +  +  +D+
Sbjct: 162  KIVLSSSPSNPNDF----LAVAILNHSG-----DLAFCRSG-GGSWTFVD-DAPSDCEDV 210

Query: 920  IYFNGEYYAXXXXXXXXXXXXXXXYSMPTTSLVASSNKFVFSRDSFYLVATSSDLLKVTR 1099
            IY +G +YA                S    SLVA+  +   + D  YLV    +LL V+R
Sbjct: 211  IYSDGVFYAVDKYGVVSLMDLRG--SRSQVSLVATERQ--LAGDIQYLVKLGQELLLVSR 266

Query: 1100 ILDDFN------------ATQRFLVQKLDFAEAKWLEVDSLTNCALFVGVNDSFSVVASE 1243
             LD  N             T RF V ++++   +W +V++L   ALFVG N S +  A++
Sbjct: 267  YLDIVNDGMEDELIPVMYRTVRFEVFRMEWEGPRWEKVENLNEMALFVGGNSSMAFSAAD 326

Query: 1244 FPGCKENCIYFF----------TGE--DKGVFNLQDGTIQTI----CPSDSKFISPQPIR 1375
            F     NCIY+            GE  D G+F L D + + +      S S+     PI 
Sbjct: 327  FGEISGNCIYYTDDYSDSDYQEQGEEPDMGIFRLCDESFEPLPYYSGGSHSRRRLLPPIW 386

Query: 1376 FSANPC 1393
             + NPC
Sbjct: 387  VTPNPC 392