BLASTX nr result
ID: Coptis25_contig00006434
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis25_contig00006434
(842 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_003578758.1| PREDICTED: uncharacterized protein LOC100826... 119 1e-24
ref|NP_001067091.1| Os12g0572400 [Oryza sativa Japonica Group] g... 115 9e-24
gb|EEC69539.1| hypothetical protein OsI_38819 [Oryza sativa Indi... 115 9e-24
dbj|BAC78592.1| pre-mRNA splicing factor [Oryza sativa Japonica ... 115 9e-24
ref|NP_001046448.1| Os02g0252100 [Oryza sativa Japonica Group] g... 114 3e-23
>ref|XP_003578758.1| PREDICTED: uncharacterized protein LOC100826288 [Brachypodium
distachyon]
Length = 295
Score = 119 bits (297), Expect = 1e-24
Identities = 72/166 (43%), Positives = 88/166 (53%)
Frame = -3
Query: 840 EPRGFAFVQFVDGYDAAEAQYHMNRQLFGGREITVVLAAETRKRPEEMRSRAXXXXXXXX 661
EPRGFAFV+FVD YDA+EAQYHMNRQ+F GREITVVLAAE+RKRPE+MRSR
Sbjct: 104 EPRGFAFVEFVDPYDASEAQYHMNRQVFFGREITVVLAAESRKRPEDMRSRTRIRGYSGG 163
Query: 660 XXXXXXXXXXXXXXXXXXXXXXXRYTXXXXXXXXXXXXXXXXRQRDDYSVSPRGRAMDHS 481
R+RDDYS SPRGR +
Sbjct: 164 QEGRRSSHYGRSRSRSRSLS-----PRPRGGRPRSRSYSPAPRRRDDYSASPRGRESHRT 218
Query: 480 RSPRDHLQERESGHVRRRSFSPGYDSADNHEADNGHAKKPVYDDTE 343
+SP H +E E G +RRS+SP D +ADN + K+ D++
Sbjct: 219 KSPIRHPKENEEG--KRRSYSPAGRDGDQRDADNDYEKRSPPPDSD 262
>ref|NP_001067091.1| Os12g0572400 [Oryza sativa Japonica Group]
gi|77556878|gb|ABA99674.1| RNA recognition motif family
protein, expressed [Oryza sativa Japonica Group]
gi|113649598|dbj|BAF30110.1| Os12g0572400 [Oryza sativa
Japonica Group] gi|215694562|dbj|BAG89555.1| unnamed
protein product [Oryza sativa Japonica Group]
gi|222617335|gb|EEE53467.1| hypothetical protein
OsJ_36595 [Oryza sativa Japonica Group]
Length = 263
Score = 115 bits (289), Expect = 9e-24
Identities = 77/197 (39%), Positives = 96/197 (48%)
Frame = -3
Query: 840 EPRGFAFVQFVDGYDAAEAQYHMNRQLFGGREITVVLAAETRKRPEEMRSRAXXXXXXXX 661
EPRGFAFV+FVD YDA+EAQYHMNRQ+F GREITVVLAAE+RKRPEEMRSRA
Sbjct: 76 EPRGFAFVEFVDPYDASEAQYHMNRQVFFGREITVVLAAESRKRPEEMRSRARVRGYSGN 135
Query: 660 XXXXXXXXXXXXXXXXXXXXXXXRYTXXXXXXXXXXXXXXXXRQRDDYSVSPRGRAMDHS 481
+ R+RDDYS SP + +
Sbjct: 136 EGRRSSYYGRSRSRSR---------SPHYRGRPRSRSYSPAPRRRDDYSASPPRKDTHPT 186
Query: 480 RSPRDHLQERESGHVRRRSFSPGYDSADNHEADNGHAKKPVYDDTEEGRPEWXXXXXXXX 301
+SPR +E + +RRS+SP D +ADNG+ K+ D++ P
Sbjct: 187 KSPRRQPKEHDE-EKKRRSYSPASRDGDPRDADNGYEKRSPPPDSDGSPPHRRSPRHSSG 245
Query: 300 XXXXXXXXXADLSPRRS 250
AD+SP RS
Sbjct: 246 SPPGSRSRSADVSPARS 262
>gb|EEC69539.1| hypothetical protein OsI_38819 [Oryza sativa Indica Group]
Length = 263
Score = 115 bits (289), Expect = 9e-24
Identities = 77/197 (39%), Positives = 96/197 (48%)
Frame = -3
Query: 840 EPRGFAFVQFVDGYDAAEAQYHMNRQLFGGREITVVLAAETRKRPEEMRSRAXXXXXXXX 661
EPRGFAFV+FVD YDA+EAQYHMNRQ+F GREITVVLAAE+RKRPEEMRSRA
Sbjct: 76 EPRGFAFVEFVDPYDASEAQYHMNRQVFFGREITVVLAAESRKRPEEMRSRARVRGYSGN 135
Query: 660 XXXXXXXXXXXXXXXXXXXXXXXRYTXXXXXXXXXXXXXXXXRQRDDYSVSPRGRAMDHS 481
+ R+RDDYS SP + +
Sbjct: 136 EGRRSSYYGRSRSRSR---------SPRYRGRPRSRSYSPAPRRRDDYSASPPRKDTHPT 186
Query: 480 RSPRDHLQERESGHVRRRSFSPGYDSADNHEADNGHAKKPVYDDTEEGRPEWXXXXXXXX 301
+SPR +E + +RRS+SP D +ADNG+ K+ D++ P
Sbjct: 187 KSPRRQPKEHDE-EKKRRSYSPASRDGDPRDADNGYEKRSPPPDSDGSPPHRRSPRHSSG 245
Query: 300 XXXXXXXXXADLSPRRS 250
AD+SP RS
Sbjct: 246 SPPGSRSRSADVSPARS 262
>dbj|BAC78592.1| pre-mRNA splicing factor [Oryza sativa Japonica Group]
Length = 232
Score = 115 bits (289), Expect = 9e-24
Identities = 77/197 (39%), Positives = 96/197 (48%)
Frame = -3
Query: 840 EPRGFAFVQFVDGYDAAEAQYHMNRQLFGGREITVVLAAETRKRPEEMRSRAXXXXXXXX 661
EPRGFAFV+FVD YDA+EAQYHMNRQ+F GREITVVLAAE+RKRPEEMRSRA
Sbjct: 45 EPRGFAFVEFVDPYDASEAQYHMNRQVFFGREITVVLAAESRKRPEEMRSRARVRGYSGN 104
Query: 660 XXXXXXXXXXXXXXXXXXXXXXXRYTXXXXXXXXXXXXXXXXRQRDDYSVSPRGRAMDHS 481
+ R+RDDYS SP + +
Sbjct: 105 EGRRSSYYGRSRSRSR---------SPHYRGRPRSRSYSPAPRRRDDYSASPPRKDTHPT 155
Query: 480 RSPRDHLQERESGHVRRRSFSPGYDSADNHEADNGHAKKPVYDDTEEGRPEWXXXXXXXX 301
+SPR +E + +RRS+SP D +ADNG+ K+ D++ P
Sbjct: 156 KSPRRQPKEHDE-EKKRRSYSPASRDGDPRDADNGYEKRSPPPDSDGSPPHRRSPRHSSG 214
Query: 300 XXXXXXXXXADLSPRRS 250
AD+SP RS
Sbjct: 215 SPPGSRSRSADVSPARS 231
>ref|NP_001046448.1| Os02g0252100 [Oryza sativa Japonica Group]
gi|47497118|dbj|BAD19168.1| putative pre-mRNA splicing
factor [Oryza sativa Japonica Group]
gi|47497696|dbj|BAD19762.1| putative pre-mRNA splicing
factor [Oryza sativa Japonica Group]
gi|66394215|gb|AAG43284.2| pre-mRNA splicing factor
[Oryza sativa] gi|113535979|dbj|BAF08362.1| Os02g0252100
[Oryza sativa Japonica Group]
gi|215704460|dbj|BAG93894.1| unnamed protein product
[Oryza sativa Japonica Group]
Length = 265
Score = 114 bits (285), Expect = 3e-23
Identities = 71/170 (41%), Positives = 89/170 (52%)
Frame = -3
Query: 840 EPRGFAFVQFVDGYDAAEAQYHMNRQLFGGREITVVLAAETRKRPEEMRSRAXXXXXXXX 661
EPRGFAFV+FVD YDA+EAQYHMNRQ+ GREITVVLAAE+RKRPEEMRSRA
Sbjct: 76 EPRGFAFVEFVDPYDASEAQYHMNRQVVFGREITVVLAAESRKRPEEMRSRARVRGYSDH 135
Query: 660 XXXXXXXXXXXXXXXXXXXXXXXRYTXXXXXXXXXXXXXXXXRQRDDYSVSPRGRAMDHS 481
+ R+RDDYS SP+ + +
Sbjct: 136 EGRRSSHYGRSRSRSRSR-------SPRYRGRPRSRSYSPAPRRRDDYSASPQRKDTHRA 188
Query: 480 RSPRDHLQERESGHVRRRSFSPGYDSADNHEADNGHAKKPVYDDTEEGRP 331
+SPR +E E +RRS+SP D +ADNG+ K+ D++ P
Sbjct: 189 KSPRRQPKEHEVDK-KRRSYSPANKDGDRRDADNGYEKRSPPADSDGSPP 237