BLASTX nr result

ID: Coptis25_contig00006434 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00006434
         (842 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003578758.1| PREDICTED: uncharacterized protein LOC100826...   119   1e-24
ref|NP_001067091.1| Os12g0572400 [Oryza sativa Japonica Group] g...   115   9e-24
gb|EEC69539.1| hypothetical protein OsI_38819 [Oryza sativa Indi...   115   9e-24
dbj|BAC78592.1| pre-mRNA splicing factor [Oryza sativa Japonica ...   115   9e-24
ref|NP_001046448.1| Os02g0252100 [Oryza sativa Japonica Group] g...   114   3e-23

>ref|XP_003578758.1| PREDICTED: uncharacterized protein LOC100826288 [Brachypodium
           distachyon]
          Length = 295

 Score =  119 bits (297), Expect = 1e-24
 Identities = 72/166 (43%), Positives = 88/166 (53%)
 Frame = -3

Query: 840 EPRGFAFVQFVDGYDAAEAQYHMNRQLFGGREITVVLAAETRKRPEEMRSRAXXXXXXXX 661
           EPRGFAFV+FVD YDA+EAQYHMNRQ+F GREITVVLAAE+RKRPE+MRSR         
Sbjct: 104 EPRGFAFVEFVDPYDASEAQYHMNRQVFFGREITVVLAAESRKRPEDMRSRTRIRGYSGG 163

Query: 660 XXXXXXXXXXXXXXXXXXXXXXXRYTXXXXXXXXXXXXXXXXRQRDDYSVSPRGRAMDHS 481
                                                     R+RDDYS SPRGR    +
Sbjct: 164 QEGRRSSHYGRSRSRSRSLS-----PRPRGGRPRSRSYSPAPRRRDDYSASPRGRESHRT 218

Query: 480 RSPRDHLQERESGHVRRRSFSPGYDSADNHEADNGHAKKPVYDDTE 343
           +SP  H +E E G  +RRS+SP     D  +ADN + K+    D++
Sbjct: 219 KSPIRHPKENEEG--KRRSYSPAGRDGDQRDADNDYEKRSPPPDSD 262


>ref|NP_001067091.1| Os12g0572400 [Oryza sativa Japonica Group]
           gi|77556878|gb|ABA99674.1| RNA recognition motif family
           protein, expressed [Oryza sativa Japonica Group]
           gi|113649598|dbj|BAF30110.1| Os12g0572400 [Oryza sativa
           Japonica Group] gi|215694562|dbj|BAG89555.1| unnamed
           protein product [Oryza sativa Japonica Group]
           gi|222617335|gb|EEE53467.1| hypothetical protein
           OsJ_36595 [Oryza sativa Japonica Group]
          Length = 263

 Score =  115 bits (289), Expect = 9e-24
 Identities = 77/197 (39%), Positives = 96/197 (48%)
 Frame = -3

Query: 840 EPRGFAFVQFVDGYDAAEAQYHMNRQLFGGREITVVLAAETRKRPEEMRSRAXXXXXXXX 661
           EPRGFAFV+FVD YDA+EAQYHMNRQ+F GREITVVLAAE+RKRPEEMRSRA        
Sbjct: 76  EPRGFAFVEFVDPYDASEAQYHMNRQVFFGREITVVLAAESRKRPEEMRSRARVRGYSGN 135

Query: 660 XXXXXXXXXXXXXXXXXXXXXXXRYTXXXXXXXXXXXXXXXXRQRDDYSVSPRGRAMDHS 481
                                    +                R+RDDYS SP  +    +
Sbjct: 136 EGRRSSYYGRSRSRSR---------SPHYRGRPRSRSYSPAPRRRDDYSASPPRKDTHPT 186

Query: 480 RSPRDHLQERESGHVRRRSFSPGYDSADNHEADNGHAKKPVYDDTEEGRPEWXXXXXXXX 301
           +SPR   +E +    +RRS+SP     D  +ADNG+ K+    D++   P          
Sbjct: 187 KSPRRQPKEHDE-EKKRRSYSPASRDGDPRDADNGYEKRSPPPDSDGSPPHRRSPRHSSG 245

Query: 300 XXXXXXXXXADLSPRRS 250
                    AD+SP RS
Sbjct: 246 SPPGSRSRSADVSPARS 262


>gb|EEC69539.1| hypothetical protein OsI_38819 [Oryza sativa Indica Group]
          Length = 263

 Score =  115 bits (289), Expect = 9e-24
 Identities = 77/197 (39%), Positives = 96/197 (48%)
 Frame = -3

Query: 840 EPRGFAFVQFVDGYDAAEAQYHMNRQLFGGREITVVLAAETRKRPEEMRSRAXXXXXXXX 661
           EPRGFAFV+FVD YDA+EAQYHMNRQ+F GREITVVLAAE+RKRPEEMRSRA        
Sbjct: 76  EPRGFAFVEFVDPYDASEAQYHMNRQVFFGREITVVLAAESRKRPEEMRSRARVRGYSGN 135

Query: 660 XXXXXXXXXXXXXXXXXXXXXXXRYTXXXXXXXXXXXXXXXXRQRDDYSVSPRGRAMDHS 481
                                    +                R+RDDYS SP  +    +
Sbjct: 136 EGRRSSYYGRSRSRSR---------SPRYRGRPRSRSYSPAPRRRDDYSASPPRKDTHPT 186

Query: 480 RSPRDHLQERESGHVRRRSFSPGYDSADNHEADNGHAKKPVYDDTEEGRPEWXXXXXXXX 301
           +SPR   +E +    +RRS+SP     D  +ADNG+ K+    D++   P          
Sbjct: 187 KSPRRQPKEHDE-EKKRRSYSPASRDGDPRDADNGYEKRSPPPDSDGSPPHRRSPRHSSG 245

Query: 300 XXXXXXXXXADLSPRRS 250
                    AD+SP RS
Sbjct: 246 SPPGSRSRSADVSPARS 262


>dbj|BAC78592.1| pre-mRNA splicing factor [Oryza sativa Japonica Group]
          Length = 232

 Score =  115 bits (289), Expect = 9e-24
 Identities = 77/197 (39%), Positives = 96/197 (48%)
 Frame = -3

Query: 840 EPRGFAFVQFVDGYDAAEAQYHMNRQLFGGREITVVLAAETRKRPEEMRSRAXXXXXXXX 661
           EPRGFAFV+FVD YDA+EAQYHMNRQ+F GREITVVLAAE+RKRPEEMRSRA        
Sbjct: 45  EPRGFAFVEFVDPYDASEAQYHMNRQVFFGREITVVLAAESRKRPEEMRSRARVRGYSGN 104

Query: 660 XXXXXXXXXXXXXXXXXXXXXXXRYTXXXXXXXXXXXXXXXXRQRDDYSVSPRGRAMDHS 481
                                    +                R+RDDYS SP  +    +
Sbjct: 105 EGRRSSYYGRSRSRSR---------SPHYRGRPRSRSYSPAPRRRDDYSASPPRKDTHPT 155

Query: 480 RSPRDHLQERESGHVRRRSFSPGYDSADNHEADNGHAKKPVYDDTEEGRPEWXXXXXXXX 301
           +SPR   +E +    +RRS+SP     D  +ADNG+ K+    D++   P          
Sbjct: 156 KSPRRQPKEHDE-EKKRRSYSPASRDGDPRDADNGYEKRSPPPDSDGSPPHRRSPRHSSG 214

Query: 300 XXXXXXXXXADLSPRRS 250
                    AD+SP RS
Sbjct: 215 SPPGSRSRSADVSPARS 231


>ref|NP_001046448.1| Os02g0252100 [Oryza sativa Japonica Group]
           gi|47497118|dbj|BAD19168.1| putative pre-mRNA splicing
           factor [Oryza sativa Japonica Group]
           gi|47497696|dbj|BAD19762.1| putative pre-mRNA splicing
           factor [Oryza sativa Japonica Group]
           gi|66394215|gb|AAG43284.2| pre-mRNA splicing factor
           [Oryza sativa] gi|113535979|dbj|BAF08362.1| Os02g0252100
           [Oryza sativa Japonica Group]
           gi|215704460|dbj|BAG93894.1| unnamed protein product
           [Oryza sativa Japonica Group]
          Length = 265

 Score =  114 bits (285), Expect = 3e-23
 Identities = 71/170 (41%), Positives = 89/170 (52%)
 Frame = -3

Query: 840 EPRGFAFVQFVDGYDAAEAQYHMNRQLFGGREITVVLAAETRKRPEEMRSRAXXXXXXXX 661
           EPRGFAFV+FVD YDA+EAQYHMNRQ+  GREITVVLAAE+RKRPEEMRSRA        
Sbjct: 76  EPRGFAFVEFVDPYDASEAQYHMNRQVVFGREITVVLAAESRKRPEEMRSRARVRGYSDH 135

Query: 660 XXXXXXXXXXXXXXXXXXXXXXXRYTXXXXXXXXXXXXXXXXRQRDDYSVSPRGRAMDHS 481
                                    +                R+RDDYS SP+ +    +
Sbjct: 136 EGRRSSHYGRSRSRSRSR-------SPRYRGRPRSRSYSPAPRRRDDYSASPQRKDTHRA 188

Query: 480 RSPRDHLQERESGHVRRRSFSPGYDSADNHEADNGHAKKPVYDDTEEGRP 331
           +SPR   +E E    +RRS+SP     D  +ADNG+ K+    D++   P
Sbjct: 189 KSPRRQPKEHEVDK-KRRSYSPANKDGDRRDADNGYEKRSPPADSDGSPP 237


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