BLASTX nr result
ID: Coptis25_contig00006420
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis25_contig00006420
(877 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002264696.1| PREDICTED: pentatricopeptide repeat-containi... 449 e-124
emb|CAN60200.1| hypothetical protein VITISV_039678 [Vitis vinifera] 445 e-123
ref|XP_002512558.1| pentatricopeptide repeat-containing protein,... 439 e-121
ref|XP_004146407.1| PREDICTED: pentatricopeptide repeat-containi... 433 e-119
ref|XP_002306265.1| predicted protein [Populus trichocarpa] gi|2... 428 e-118
>ref|XP_002264696.1| PREDICTED: pentatricopeptide repeat-containing protein At2g13420,
mitochondrial [Vitis vinifera]
gi|296088528|emb|CBI37519.3| unnamed protein product
[Vitis vinifera]
Length = 525
Score = 449 bits (1155), Expect = e-124
Identities = 210/294 (71%), Positives = 258/294 (87%), Gaps = 2/294 (0%)
Frame = +1
Query: 1 RQAIRAFDDMDSFVQL-VGGDDFGFLLDTLCKYGYVKVATEIFNKRKFRFKPDEKIYTIL 177
RQA+RAFDDM FV+ DDF +LLDTL KYGYVK+A++IFN+RKF+F+ + K+YTIL
Sbjct: 169 RQAVRAFDDMSCFVEKDADSDDFCYLLDTLSKYGYVKLASQIFNQRKFKFEANAKMYTIL 228
Query: 178 IYGWFKVNRVEMAERFFREMSEIGLEPNVVTYNVMLNGICRKSSLHPETRFENVVRAADK 357
IYGW K+NRV +AER EM E G+E NVVTYNV+LNGICR++SLHP+ RFE +R A+K
Sbjct: 229 IYGWCKINRVSIAERLLGEMVERGIEANVVTYNVLLNGICRRASLHPDDRFERTIRDAEK 288
Query: 358 LFEEMQERGIEPDVTSYSIVLHVYSRAHKPDLSLDKLNMMKEKGIFPTIVTYTSVIKCLC 537
+ +EM+++GIEPDVTSYSIV+HVYSRAHKP+L+LDKL MMK+KGI+PT+ TYTSV+KCLC
Sbjct: 289 VLDEMRQKGIEPDVTSYSIVIHVYSRAHKPELTLDKLRMMKDKGIWPTVATYTSVVKCLC 348
Query: 538 SCGRIEDAEKLLDEMVRNGVSPSPSTYNCFFKEYRGRKDTDSALTLYRKMGES-SCMPSL 714
SCGR+EDAE+L+ +MV++GVSPS +TYNCFFKEYRGRKD+D+AL LYRKM E SC+P +
Sbjct: 349 SCGRLEDAEELVSDMVKDGVSPSAATYNCFFKEYRGRKDSDNALRLYRKMKEEYSCLPDM 408
Query: 715 QTYNILVGMFSKLNKMEIVREIWNDMKVSGAGPDLDSYTLLIHGLCEKKKWREA 876
TYNILVGMF KLN+MEIV+EIW+DMK SGAGPDLDSYTLLIHGLCEK+KW+EA
Sbjct: 409 HTYNILVGMFVKLNRMEIVQEIWDDMKTSGAGPDLDSYTLLIHGLCEKQKWKEA 462
Score = 56.6 bits (135), Expect = 7e-06
Identities = 47/186 (25%), Positives = 82/186 (44%), Gaps = 3/186 (1%)
Frame = +1
Query: 151 PDEKIYTILIYGWFKVNRVEMAERFFREMSEIGLEPNVVTYNVMLNGICRKSSLHPETRF 330
P YT ++ R+E AE +M + G+ P+ TYN C
Sbjct: 335 PTVATYTSVVKCLCSCGRLEDAEELVSDMVKDGVSPSAATYN------CFFKEYRGRKDS 388
Query: 331 ENVVRAADKLFEEMQERGIEPDVTSYSIVLHVYSRAHKPDLSLDKLNMMKEKGIFPTIVT 510
+N +R K+ EE PD+ +Y+I++ ++ + ++ ++ + + MK G P + +
Sbjct: 389 DNALRLYRKMKEEYS---CLPDMHTYNILVGMFVKLNRMEIVQEIWDDMKTSGAGPDLDS 445
Query: 511 YTSVIKCLCSCGRIEDAEKLLDEMVRNGVSPSPSTYNCFFKEYRGRKDTDSALT---LYR 681
YT +I LC + ++A EM+ G P T+ YRG +D T L +
Sbjct: 446 YTLLIHGLCEKQKWKEACHFFVEMIEKGYLPQKITFETL---YRGLIQSDMLKTWRRLKK 502
Query: 682 KMGESS 699
K+ E S
Sbjct: 503 KLEEES 508
>emb|CAN60200.1| hypothetical protein VITISV_039678 [Vitis vinifera]
Length = 525
Score = 445 bits (1144), Expect = e-123
Identities = 209/294 (71%), Positives = 255/294 (86%), Gaps = 2/294 (0%)
Frame = +1
Query: 1 RQAIRAFDDMDSFVQL-VGGDDFGFLLDTLCKYGYVKVATEIFNKRKFRFKPDEKIYTIL 177
RQA+RAFDDM FV+ DDF +LLDTL KYGYVK+A++IFN+RKF+F+ + K+YTIL
Sbjct: 169 RQAVRAFDDMSCFVEKDADSDDFCYLLDTLSKYGYVKLASQIFNQRKFKFEANAKMYTIL 228
Query: 178 IYGWFKVNRVEMAERFFREMSEIGLEPNVVTYNVMLNGICRKSSLHPETRFENVVRAADK 357
IYGW K+NRV +AER EM E G+ NVVTYNV+LNGICR +SLHP+ RFE +R A+K
Sbjct: 229 IYGWCKINRVSIAERLLGEMVERGJXANVVTYNVLLNGICRXASLHPDDRFERTIRDAEK 288
Query: 358 LFEEMQERGIEPDVTSYSIVLHVYSRAHKPDLSLDKLNMMKEKGIFPTIVTYTSVIKCLC 537
+ +EM++ GIEPDVTSYSIV+HVYSRAHKP+L+LDKL MMK+KGI+PT+ TYTSV+KCLC
Sbjct: 289 VLDEMRQXGIEPDVTSYSIVIHVYSRAHKPELTLDKLRMMKDKGIWPTVATYTSVVKCLC 348
Query: 538 SCGRIEDAEKLLDEMVRNGVSPSPSTYNCFFKEYRGRKDTDSALTLYRKMGES-SCMPSL 714
SCGR+EDAE+L+ +MV++GVSPS +TYNCFFKEYRGRKD+D+AL LYRKM E SC+P +
Sbjct: 349 SCGRLEDAEELVSDMVKDGVSPSAATYNCFFKEYRGRKDSDNALRLYRKMKEEYSCLPDM 408
Query: 715 QTYNILVGMFSKLNKMEIVREIWNDMKVSGAGPDLDSYTLLIHGLCEKKKWREA 876
TYNILVGMF KLN+MEIV+EIW+DMK SGAGPDLDSYTLLIHGLCEK+KW+EA
Sbjct: 409 HTYNILVGMFVKLNRMEIVQEIWDDMKTSGAGPDLDSYTLLIHGLCEKQKWKEA 462
Score = 56.6 bits (135), Expect = 7e-06
Identities = 47/186 (25%), Positives = 82/186 (44%), Gaps = 3/186 (1%)
Frame = +1
Query: 151 PDEKIYTILIYGWFKVNRVEMAERFFREMSEIGLEPNVVTYNVMLNGICRKSSLHPETRF 330
P YT ++ R+E AE +M + G+ P+ TYN C
Sbjct: 335 PTVATYTSVVKCLCSCGRLEDAEELVSDMVKDGVSPSAATYN------CFFKEYRGRKDS 388
Query: 331 ENVVRAADKLFEEMQERGIEPDVTSYSIVLHVYSRAHKPDLSLDKLNMMKEKGIFPTIVT 510
+N +R K+ EE PD+ +Y+I++ ++ + ++ ++ + + MK G P + +
Sbjct: 389 DNALRLYRKMKEEYS---CLPDMHTYNILVGMFVKLNRMEIVQEIWDDMKTSGAGPDLDS 445
Query: 511 YTSVIKCLCSCGRIEDAEKLLDEMVRNGVSPSPSTYNCFFKEYRGRKDTDSALT---LYR 681
YT +I LC + ++A EM+ G P T+ YRG +D T L +
Sbjct: 446 YTLLIHGLCEKQKWKEACHFFVEMIEKGYLPQKITFETL---YRGLIQSDMLKTWRRLKK 502
Query: 682 KMGESS 699
K+ E S
Sbjct: 503 KLEEES 508
>ref|XP_002512558.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223548519|gb|EEF50010.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 511
Score = 439 bits (1129), Expect = e-121
Identities = 203/294 (69%), Positives = 254/294 (86%), Gaps = 2/294 (0%)
Frame = +1
Query: 1 RQAIRAFDDMDSFV-QLVGGDDFGFLLDTLCKYGYVKVATEIFNKRKFRFKPDEKIYTIL 177
RQAIRAFDDM+SF+ + V F FLLDTLCKYGY+KVA E+FNKRKFRF P+ +IYT+L
Sbjct: 155 RQAIRAFDDMESFIAETVNQTHFCFLLDTLCKYGYIKVAVEVFNKRKFRFLPNVRIYTVL 214
Query: 178 IYGWFKVNRVEMAERFFREMSEIGLEPNVVTYNVMLNGICRKSSLHPETRFENVVRAADK 357
IYGW K+ R++MAERF REM E+G+E NVVTYNV+L+GICR++ L PE RFE + ADK
Sbjct: 215 IYGWCKIGRIDMAERFIREMDEMGIEANVVTYNVLLDGICRRAKLQPEGRFERTIMKADK 274
Query: 358 LFEEMQERGIEPDVTSYSIVLHVYSRAHKPDLSLDKLNMMKEKGIFPTIVTYTSVIKCLC 537
+F+EM+++GIEPDVTS+SI+LHVYSRAHKP L++DKL +M+E GI PT+ TYTSV+KCLC
Sbjct: 275 VFDEMRQKGIEPDVTSFSILLHVYSRAHKPQLTVDKLKLMEEMGICPTVATYTSVLKCLC 334
Query: 538 SCGRIEDAEKLLDEMVRNGVSPSPSTYNCFFKEYRGRKDTDSALTLYRKM-GESSCMPSL 714
SCGRI+DAE+LL++MVRNGVSP+ +TYNCFFKEYRGRKD ++AL LYRK+ E+ C PS+
Sbjct: 335 SCGRIDDAEELLEQMVRNGVSPNAATYNCFFKEYRGRKDPETALKLYRKIRQENLCDPSV 394
Query: 715 QTYNILVGMFSKLNKMEIVREIWNDMKVSGAGPDLDSYTLLIHGLCEKKKWREA 876
TYNIL+GMF KLN+ IV EIWND++ SG+GPDLDSYTLL+HGLCEK+KW++A
Sbjct: 395 HTYNILLGMFMKLNRFNIVNEIWNDLRSSGSGPDLDSYTLLVHGLCEKQKWQKA 448
Score = 59.7 bits (143), Expect = 9e-07
Identities = 50/244 (20%), Positives = 112/244 (45%), Gaps = 37/244 (15%)
Frame = +1
Query: 10 IRAFDDMDSFVQLVGGDDFGFLLDTLCKYGYVKV----------ATEIFNK-RKFRFKPD 156
IR D+M +V + LLD +C+ ++ A ++F++ R+ +PD
Sbjct: 231 IREMDEMGIEANVV---TYNVLLDGICRRAKLQPEGRFERTIMKADKVFDEMRQKGIEPD 287
Query: 157 EKIYTILIYGWFKVNRVEMAERFFREMSEIGLEPNVVTYNVMLNGICRKSSLHP-ETRFE 333
++IL++ + + ++ ++ + M E+G+ P V TY +L +C + E E
Sbjct: 288 VTSFSILLHVYSRAHKPQLTVDKLKLMEEMGICPTVATYTSVLKCLCSCGRIDDAEELLE 347
Query: 334 NVVR------------------------AADKLFEEMQERGI-EPDVTSYSIVLHVYSRA 438
+VR A KL+ ++++ + +P V +Y+I+L ++ +
Sbjct: 348 QMVRNGVSPNAATYNCFFKEYRGRKDPETALKLYRKIRQENLCDPSVHTYNILLGMFMKL 407
Query: 439 HKPDLSLDKLNMMKEKGIFPTIVTYTSVIKCLCSCGRIEDAEKLLDEMVRNGVSPSPSTY 618
++ ++ + N ++ G P + +YT ++ LC + + A + EM+ G+ P +T+
Sbjct: 408 NRFNIVNEIWNDLRSSGSGPDLDSYTLLVHGLCEKQKWQKACQFFVEMIEKGLLPQKATF 467
Query: 619 NCFF 630
+
Sbjct: 468 EMLY 471
>ref|XP_004146407.1| PREDICTED: pentatricopeptide repeat-containing protein At2g13420,
mitochondrial-like [Cucumis sativus]
gi|449523938|ref|XP_004168980.1| PREDICTED:
pentatricopeptide repeat-containing protein At2g13420,
mitochondrial-like [Cucumis sativus]
Length = 506
Score = 433 bits (1113), Expect = e-119
Identities = 206/294 (70%), Positives = 243/294 (82%), Gaps = 2/294 (0%)
Frame = +1
Query: 1 RQAIRAFDDMDSFV-QLVGGDDFGFLLDTLCKYGYVKVATEIFNKRKFRFKPDEKIYTIL 177
RQAIRAFDD++ VG DDF +LLD LCKYGYVKVA E+FNKRK F D KIYTIL
Sbjct: 150 RQAIRAFDDIEGLTGNKVGIDDFCYLLDVLCKYGYVKVAVEVFNKRKEEFGVDVKIYTIL 209
Query: 178 IYGWFKVNRVEMAERFFREMSEIGLEPNVVTYNVMLNGICRKSSLHPETRFENVVRAADK 357
IYGW K+ R EMAERF ++M E G+EPNVVTYNV+LNG+CR++SLHPE RFE +R A+K
Sbjct: 210 IYGWCKIGRFEMAERFLKDMVERGIEPNVVTYNVLLNGVCRRASLHPEGRFEKTIRHAEK 269
Query: 358 LFEEMQERGIEPDVTSYSIVLHVYSRAHKPDLSLDKLNMMKEKGIFPTIVTYTSVIKCLC 537
+F+EM++RGIEPDVTS+SIVLHVYSRAHKP+LSLDKL MKE GI PT+ TYTSVIKCLC
Sbjct: 270 VFDEMRKRGIEPDVTSFSIVLHVYSRAHKPELSLDKLKQMKELGISPTVATYTSVIKCLC 329
Query: 538 SCGRIEDAEKLLDEMVRNGVSPSPSTYNCFFKEYRGRKDTDSALTLYRKMGESS-CMPSL 714
SCGR+ED E L++EMVR+G+SPSP+TYNCFFKEYRGRKD AL LY+KM E C PSL
Sbjct: 330 SCGRLEDGENLIEEMVRSGISPSPTTYNCFFKEYRGRKDGAGALRLYKKMREDCLCAPSL 389
Query: 715 QTYNILVGMFSKLNKMEIVREIWNDMKVSGAGPDLDSYTLLIHGLCEKKKWREA 876
TYNIL+ +F L+K E ++E+WNDMK SG GPDLDSYT +IHGLCEK++W EA
Sbjct: 390 HTYNILLALFLNLDKKETLKELWNDMKESGVGPDLDSYTTIIHGLCEKQRWSEA 443
Score = 73.6 bits (179), Expect = 6e-11
Identities = 57/229 (24%), Positives = 110/229 (48%), Gaps = 30/229 (13%)
Frame = +1
Query: 103 VKVATEIFNK-RKFRFKPDEKIYTILIYGWFKVNRVEMAERFFREMSEIGLEPNVVTYNV 279
++ A ++F++ RK +PD ++I+++ + + ++ E++ ++M E+G+ P V TY
Sbjct: 264 IRHAEKVFDEMRKRGIEPDVTSFSIVLHVYSRAHKPELSLDKLKQMKELGISPTVATYTS 323
Query: 280 MLNGICRKSSLHP-ETRFENVVRA------------------------ADKLFEEMQERG 384
++ +C L E E +VR+ A +L+++M+E
Sbjct: 324 VIKCLCSCGRLEDGENLIEEMVRSGISPSPTTYNCFFKEYRGRKDGAGALRLYKKMREDC 383
Query: 385 I-EPDVTSYSIVLHVYSRAHKPDLSLDKLNMMKEKGIFPTIVTYTSVIKCLCSCGRIEDA 561
+ P + +Y+I+L ++ K + + N MKE G+ P + +YT++I LC R +A
Sbjct: 384 LCAPSLHTYNILLALFLNLDKKETLKELWNDMKESGVGPDLDSYTTIIHGLCEKQRWSEA 443
Query: 562 EKLLDEMVRNGVSPSPSTYNCFFKEYRGRKDTDSALT---LYRKMGESS 699
+ EM+ G P T+ YRG +D T L +K+ E S
Sbjct: 444 CQFFVEMIERGFLPQKVTFEML---YRGLIQSDMLRTWRRLKKKLEEES 489
>ref|XP_002306265.1| predicted protein [Populus trichocarpa] gi|222855714|gb|EEE93261.1|
predicted protein [Populus trichocarpa]
Length = 548
Score = 428 bits (1101), Expect = e-118
Identities = 207/294 (70%), Positives = 244/294 (82%), Gaps = 2/294 (0%)
Frame = +1
Query: 1 RQAIRAFDDMDSFV-QLVGGDDFGFLLDTLCKYGYVKVATEIFNKRKFRFKPDEKIYTIL 177
RQAIRAFDDM+SFV + V F FLLDTLCKYGYVKV EIFNKRK RF P+ K+YT+L
Sbjct: 192 RQAIRAFDDMESFVSEPVNETHFCFLLDTLCKYGYVKVGVEIFNKRKHRFSPNVKMYTVL 251
Query: 178 IYGWFKVNRVEMAERFFREMSEIGLEPNVVTYNVMLNGICRKSSLHPETRFENVVRAADK 357
IYGW K+ R++MAERF +E E G+E VVTYNV+LNGICR++SLHPE+RFE + A+
Sbjct: 252 IYGWCKIGRIDMAERFLKETGERGIEATVVTYNVLLNGICRRASLHPESRFERTITLAEN 311
Query: 358 LFEEMQERGIEPDVTSYSIVLHVYSRAHKPDLSLDKLNMMKEKGIFPTIVTYTSVIKCLC 537
LF+EM+ERGIEPDVTS+SIVLHVYSRAHKP+L+LDKL +MKEKGI P++VTYTSV+KCLC
Sbjct: 312 LFDEMRERGIEPDVTSFSIVLHVYSRAHKPELTLDKLKLMKEKGICPSVVTYTSVVKCLC 371
Query: 538 SCGRIEDAEKLLDEMVRNGVSPSPSTYNCFFKEYRGRKDTDSALTLYRKMGESSC-MPSL 714
SCGRIEDAE+LL EMVRNGVS + TYNCFFKEY GRKD +SAL LY+KM E L
Sbjct: 372 SCGRIEDAEELLGEMVRNGVSRTAVTYNCFFKEYMGRKDAESALKLYKKMREDGLGSLGL 431
Query: 715 QTYNILVGMFSKLNKMEIVREIWNDMKVSGAGPDLDSYTLLIHGLCEKKKWREA 876
+YNIL+ MF LN+++IV EIW D+K SG GPDLDSYT+LIHGLCEK+KWREA
Sbjct: 432 HSYNILLRMFMMLNRLDIVNEIWEDLKSSGLGPDLDSYTMLIHGLCEKEKWREA 485
Score = 60.8 bits (146), Expect = 4e-07
Identities = 53/229 (23%), Positives = 107/229 (46%), Gaps = 30/229 (13%)
Frame = +1
Query: 103 VKVATEIFNKRKFR-FKPDEKIYTILIYGWFKVNRVEMAERFFREMSEIGLEPNVVTYNV 279
+ +A +F++ + R +PD ++I+++ + + ++ E+ + M E G+ P+VVTY
Sbjct: 306 ITLAENLFDEMRERGIEPDVTSFSIVLHVYSRAHKPELTLDKLKLMKEKGICPSVVTYTS 365
Query: 280 MLNGICRKSSLHP-ETRFENVVR------------------------AADKLFEEMQERG 384
++ +C + E +VR +A KL+++M+E G
Sbjct: 366 VVKCLCSCGRIEDAEELLGEMVRNGVSRTAVTYNCFFKEYMGRKDAESALKLYKKMREDG 425
Query: 385 IEP-DVTSYSIVLHVYSRAHKPDLSLDKLNMMKEKGIFPTIVTYTSVIKCLCSCGRIEDA 561
+ + SY+I+L ++ ++ D+ + +K G+ P + +YT +I LC + +A
Sbjct: 426 LGSLGLHSYNILLRMFMMLNRLDIVNEIWEDLKSSGLGPDLDSYTMLIHGLCEKEKWREA 485
Query: 562 EKLLDEMVRNGVSPSPSTYNCFFKEYRGRKDTDSALT---LYRKMGESS 699
K EM+ G+ P T+ Y+G +D T L +K+ E S
Sbjct: 486 CKFFVEMIEKGLLPQKVTFETL---YKGLIQSDMLRTWRRLKKKLDEES 531