BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00006348
         (3100 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004139466.1| PREDICTED: splicing factor U2af small subuni...   341   8e-91
gb|AAH03883.1| CDNA sequence BC003883 [Mus musculus]                  340   1e-90
ref|XP_002277445.2| PREDICTED: splicing factor U2af small subuni...   335   4e-89
ref|XP_003540217.1| PREDICTED: splicing factor U2af small subuni...   334   1e-88
ref|XP_004143302.1| PREDICTED: splicing factor U2af small subuni...   332   3e-88

>ref|XP_004139466.1| PREDICTED: splicing factor U2af small subunit A-like [Cucumis
            sativus] gi|449510609|ref|XP_004163713.1| PREDICTED:
            splicing factor U2af small subunit A-like [Cucumis
            sativus]
          Length = 326

 Score =  341 bits (874), Expect = 8e-91
 Identities = 184/326 (56%), Positives = 205/326 (62%), Gaps = 27/326 (8%)
 Frame = -2

Query: 3045 MAEHLARIFGTEEDRVNCPFYLKIGACRHGDRCSRLHPKPNSSPTLVLMNMYQRPDMIHP 2866
            MAEHLA IFGTE+DRVNCPFY KIGACRHGDRCSRLH KP+ SPTL+L NMYQRPDMI P
Sbjct: 1    MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITP 60

Query: 2865 GIDSQGLPIPPHIIQAHFEDFYQDLFEELSKYGDIESLNICDNLADHMVGNAYIQFREAE 2686
            G+D+QG PI P  IQ HFE+FY+DLF+EL+KYG+IESLN+CDNLADHMVGN Y+QFRE E
Sbjct: 61   GVDAQGNPIDPRNIQDHFEEFYEDLFQELNKYGEIESLNVCDNLADHMVGNVYVQFREEE 120

Query: 2685 SAGKALQGLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKKIS--- 2515
             A  AL+ LSGRFYAGRPIIVDFSPVTDFREATCRQYEEN CNRGGYCNFMHLK+I    
Sbjct: 121  QAANALRNLSGRFYAGRPIIVDFSPVTDFREATCRQYEENMCNRGGYCNFMHLKRIGREL 180

Query: 2514 -XXXXXXXXXXXXXXXXXXXXXXXXXSYEELSHGSRSHG-------------XXXXXXXX 2377
                                      SYEE S+G   H                      
Sbjct: 181  RHELFAMYRRRHSHSRSRSRSPYRHRSYEERSYGKHGHSRRYDERDAYHESRSRRHRTTS 240

Query: 2376 XXXXXXXXXXRGEQSSIPGREGSAERRAKIELWNREREQA--EAADDSRNANTNETSCCS 2203
                      RG ++  P REGS ERRAKIE WN+EREQ     A+   N N +E S  S
Sbjct: 241  PGHRSRSRSPRGRKNRSPVREGSEERRAKIEQWNKEREQGNDNNANSDDNRNNHEKSYDS 300

Query: 2202 RER--------GEYHD*QPPAQQGGY 2149
              +         E    QPP Q  GY
Sbjct: 301  EVKYANQTCGYEEQQQRQPPEQGYGY 326


>gb|AAH03883.1| CDNA sequence BC003883 [Mus musculus]
          Length = 310

 Score =  340 bits (873), Expect = 1e-90
 Identities = 177/306 (57%), Positives = 200/306 (65%), Gaps = 17/306 (5%)
 Frame = -2

Query: 3045 MAEHLARIFGTEEDRVNCPFYLKIGACRHGDRCSRLHPKPNSSPTLVLMNMYQRPDMIHP 2866
            MAEHLA IFGTE+DRVNCPFY KIGACRHGDRCSRLH KP+ SPTL+L NMYQRPDMI P
Sbjct: 1    MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLANMYQRPDMITP 60

Query: 2865 GIDSQGLPIPPHIIQAHFEDFYQDLFEELSKYGDIESLNICDNLADHMVGNAYIQFREAE 2686
            G+D QG P+ P  IQ HFEDFY+DLFEELSKYG+IESLNICDNLADHMVGN Y+QFRE E
Sbjct: 61   GVDPQGQPLDPRKIQQHFEDFYEDLFEELSKYGEIESLNICDNLADHMVGNVYVQFREEE 120

Query: 2685 SAGKALQGLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKKIS--X 2512
             AG+AL+ LSGRFYAGRPIIVDFSPVTDFREATCRQYEEN CNRGGYCNFMHLKKIS   
Sbjct: 121  HAGEALRNLSGRFYAGRPIIVDFSPVTDFREATCRQYEENVCNRGGYCNFMHLKKISREL 180

Query: 2511 XXXXXXXXXXXXXXXXXXXXXXXXSYEELSHGSRSHG-------------XXXXXXXXXX 2371
                                     + +  HG R +G                       
Sbjct: 181  RRQLFGRYRRRHSRSRSRSPQAHRGHGDRPHGGRGYGRRDDDRNQRYHDKGRRPRSRSPG 240

Query: 2370 XXXXXXXXRGEQSSIPGREGSAERRAKIELWNREREQAEAADDSRNANTNETSCCS-RER 2194
                     G +   P RE S ERRAKI  WNRE+EQA+  ++  N +  +      ++ 
Sbjct: 241  HRGRSRSPPGRRDRSPVRENSEERRAKIAQWNREKEQADTGNNDVNHDVTDNHANGFQDN 300

Query: 2193 GE-YHD 2179
            GE Y+D
Sbjct: 301  GEDYYD 306


>ref|XP_002277445.2| PREDICTED: splicing factor U2af small subunit B-like [Vitis vinifera]
          Length = 343

 Score =  335 bits (859), Expect = 4e-89
 Identities = 185/343 (53%), Positives = 206/343 (60%), Gaps = 42/343 (12%)
 Frame = -2

Query: 3045 MAEHLARIFGTEEDRVNCPFYLKIGACRHGDRCSRLHPKPNSSPTLVLMNMYQRPDMIHP 2866
            MAEHLA IFGTE+DRVNCPFY KIGACRHGDRCSRLH KP+ SPTL+L NMYQRPDM+ P
Sbjct: 1    MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMVTP 60

Query: 2865 GIDSQGLPIPPHIIQAHFEDFYQDLFEELSKYGDIESLNICDNLADHMVGNAYIQFREAE 2686
            G+D QG P+ P  IQ HFEDFY+DLFEELSKYG+IESLNICDNLADHMVGN Y+QFRE E
Sbjct: 61   GVDPQGQPLDPRKIQEHFEDFYEDLFEELSKYGEIESLNICDNLADHMVGNVYVQFREEE 120

Query: 2685 SAGKALQGLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKKIS--X 2512
             A  AL+ L+GRFYAGRPIIVDFSPVTDFREATCRQYEEN CNRGGYCNFMHLKKIS   
Sbjct: 121  HAANALRNLNGRFYAGRPIIVDFSPVTDFREATCRQYEENICNRGGYCNFMHLKKISREL 180

Query: 2511 XXXXXXXXXXXXXXXXXXXXXXXXSYEELSHGSRS-HGXXXXXXXXXXXXXXXXXXRGE- 2338
                                     +EE  HG    HG                    + 
Sbjct: 181  RRQLFGRNRRRRSRSRSRSPYRHRGHEEHPHGPHGPHGPHGPHGPRGPRGSNRRDDDRDH 240

Query: 2337 ----------QSSIPGREGSAER------------------RAKIELWNREREQAEAA-- 2248
                      +S  P R G   R                  RAKIE WNREREQAEA   
Sbjct: 241  RYHDRGGRRPRSRSPARRGGRSRSPGGRRNKSPVREGSAERRAKIEQWNREREQAEATNK 300

Query: 2247 -DDSRNANTNETSCCSRERGEYH-------D*QPPAQQGGYCY 2143
             D+S + N N  +   ++  +Y+       D Q   Q GGY Y
Sbjct: 301  NDNSHSDNGNNNNDFEQDDQQYYNPQHQEEDQQQQQQHGGYNY 343


>ref|XP_003540217.1| PREDICTED: splicing factor U2af small subunit A-like [Glycine max]
          Length = 315

 Score =  334 bits (856), Expect = 1e-88
 Identities = 174/314 (55%), Positives = 198/314 (63%), Gaps = 16/314 (5%)
 Frame = -2

Query: 3045 MAEHLARIFGTEEDRVNCPFYLKIGACRHGDRCSRLHPKPNSSPTLVLMNMYQRPDMIHP 2866
            MAEHLA IFGTE+DRVNCPFY KIGACRHGDRCSRLH KP+ SPT++L NMYQRPDMI P
Sbjct: 1    MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTILLSNMYQRPDMITP 60

Query: 2865 GIDSQGLPIPPHIIQAHFEDFYQDLFEELSKYGDIESLNICDNLADHMVGNAYIQFREAE 2686
            G+D+ G PI P  IQ HFE+FY+DLF+ELSKYGDIESLN+CDNLADHMVGN Y+QFRE E
Sbjct: 61   GVDAHGHPIDPRKIQDHFEEFYEDLFDELSKYGDIESLNVCDNLADHMVGNVYVQFREEE 120

Query: 2685 SAGKALQGLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKKIS--X 2512
             A  A++ L+GRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLK+IS   
Sbjct: 121  HAANAVRNLTGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISREL 180

Query: 2511 XXXXXXXXXXXXXXXXXXXXXXXXSYEELS--------------HGSRSHGXXXXXXXXX 2374
                                    S+EE S              H SRS           
Sbjct: 181  RRQLFGKSHGRHSRSRSRSPYRHRSHEERSHRSHSRKYDDRDHHHESRSRRHRSTSPRHR 240

Query: 2373 XXXXXXXXXRGEQSSIPGREGSAERRAKIELWNREREQAEAADDSRNANTNETSCCSRER 2194
                      G +   P R+GS ERRA+IE WNRERE  E          N  +      
Sbjct: 241  RGRSRSRSPGGRRHHSPVRDGSEERRARIEQWNREREDQEPGYKVNAEEINNGNASKHHG 300

Query: 2193 GEYHD*QPPAQQGG 2152
             +  + +P + Q G
Sbjct: 301  HQQQEQEPQSPQEG 314


>ref|XP_004143302.1| PREDICTED: splicing factor U2af small subunit A-like [Cucumis
            sativus]
          Length = 317

 Score =  332 bits (852), Expect = 3e-88
 Identities = 173/287 (60%), Positives = 188/287 (65%), Gaps = 23/287 (8%)
 Frame = -2

Query: 3045 MAEHLARIFGTEEDRVNCPFYLKIGACRHGDRCSRLHPKPNSSPTLVLMNMYQRPDMIHP 2866
            MAEHLA IFGTE+DRVNCPFY KIGACRHGDRCSRLH KP+ SPTL+L NMYQRPDMI P
Sbjct: 1    MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITP 60

Query: 2865 GIDSQGLPIPPHIIQAHFEDFYQDLFEELSKYGDIESLNICDNLADHMVGNAYIQFREAE 2686
            G+D QG  + P  +Q HFEDFY+DLFEELSKYGD+ESLNICDNLADHMVGN Y+QFRE E
Sbjct: 61   GVDPQGQALDPRKVQDHFEDFYEDLFEELSKYGDLESLNICDNLADHMVGNVYVQFREEE 120

Query: 2685 SAGKALQGLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKKIS--- 2515
             A  AL  L+GRFYAGRPIIVDFSPVTDFREATCRQYEEN CNRGGYCNFMHLKKIS   
Sbjct: 121  QAANALHNLNGRFYAGRPIIVDFSPVTDFREATCRQYEENVCNRGGYCNFMHLKKISREL 180

Query: 2514 -XXXXXXXXXXXXXXXXXXXXXXXXXSYEELSHG---------SRSHG----------XX 2395
                                       YEE SHG         SR  G            
Sbjct: 181  RRRLFGRSRRRRSRSRSRSQSPHKHHGYEERSHGGGGGRGRGPSRRDGEKDPRYHDRSRR 240

Query: 2394 XXXXXXXXXXXXXXXXRGEQSSIPGREGSAERRAKIELWNREREQAE 2254
                             G ++  P RE SAERRAKIE WNR+RE+ +
Sbjct: 241  PRSRSPRHRGGRSRSPGGRRNRSPVRESSAERRAKIEQWNRDREKED 287