BLASTX nr result
ID: Coptis25_contig00006276
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis25_contig00006276 (445 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value emb|CAN75139.1| hypothetical protein VITISV_040756 [Vitis vinifera] 63 4e-24 ref|XP_002272717.2| PREDICTED: uncharacterized protein LOC100247... 63 4e-24 emb|CBI23011.3| unnamed protein product [Vitis vinifera] 63 7e-22 ref|XP_002321404.1| predicted protein [Populus trichocarpa] gi|2... 65 4e-20 emb|CAN64660.1| hypothetical protein VITISV_009615 [Vitis vinifera] 64 1e-18 >emb|CAN75139.1| hypothetical protein VITISV_040756 [Vitis vinifera] Length = 2281 Score = 63.2 bits (152), Expect(3) = 4e-24 Identities = 26/43 (60%), Positives = 34/43 (79%) Frame = +2 Query: 293 RFVFRSDSKDNYLYCPNAVDLRNGEIEQFQIHWMRGEPIIVRH 421 R FR +S D++LYCPN+ L + EIE FQ+HWMRGEP+IVR+ Sbjct: 1341 RAAFRENSHDDFLYCPNSACLGDNEIEHFQMHWMRGEPVIVRN 1383 Score = 60.8 bits (146), Expect(3) = 4e-24 Identities = 32/65 (49%), Positives = 41/65 (63%), Gaps = 2/65 (3%) Frame = +3 Query: 84 GGCGSKILELRRSLKANWACNLLKSADKLTSNSHFPNVDSPIGCSSCHP--FVGKVFKNL 257 GGCG++ LELRR + NW +L+KSA+ LT N P++D GCS C P G K+ Sbjct: 1278 GGCGTETLELRRIFEPNWVDHLIKSAEDLTMNFGSPDIDFSQGCSLCLPTASTGSGEKHC 1337 Query: 258 EVRRA 272 EVRRA Sbjct: 1338 EVRRA 1342 Score = 32.3 bits (72), Expect(3) = 4e-24 Identities = 12/17 (70%), Positives = 13/17 (76%) Frame = +2 Query: 29 FPDWRTTVDYSIPCPLK 79 FPDWR +D SIPCP K Sbjct: 1259 FPDWRVNMDGSIPCPPK 1275 >ref|XP_002272717.2| PREDICTED: uncharacterized protein LOC100247074 [Vitis vinifera] Length = 1876 Score = 63.2 bits (152), Expect(3) = 4e-24 Identities = 26/43 (60%), Positives = 34/43 (79%) Frame = +2 Query: 293 RFVFRSDSKDNYLYCPNAVDLRNGEIEQFQIHWMRGEPIIVRH 421 R FR +S D++LYCPN+ L + EIE FQ+HWMRGEP+IVR+ Sbjct: 1377 RAAFRENSHDDFLYCPNSACLGDNEIEHFQMHWMRGEPVIVRN 1419 Score = 60.8 bits (146), Expect(3) = 4e-24 Identities = 32/65 (49%), Positives = 41/65 (63%), Gaps = 2/65 (3%) Frame = +3 Query: 84 GGCGSKILELRRSLKANWACNLLKSADKLTSNSHFPNVDSPIGCSSCHP--FVGKVFKNL 257 GGCG++ LELRR + NW +L+KSA+ LT N P++D GCS C P G K+ Sbjct: 1314 GGCGTETLELRRIFEPNWVDHLIKSAEDLTMNFGSPDIDFSQGCSLCLPTASTGSGEKHC 1373 Query: 258 EVRRA 272 EVRRA Sbjct: 1374 EVRRA 1378 Score = 32.3 bits (72), Expect(3) = 4e-24 Identities = 12/17 (70%), Positives = 13/17 (76%) Frame = +2 Query: 29 FPDWRTTVDYSIPCPLK 79 FPDWR +D SIPCP K Sbjct: 1295 FPDWRVNMDGSIPCPPK 1311 >emb|CBI23011.3| unnamed protein product [Vitis vinifera] Length = 1904 Score = 63.2 bits (152), Expect(3) = 7e-22 Identities = 26/43 (60%), Positives = 34/43 (79%) Frame = +2 Query: 293 RFVFRSDSKDNYLYCPNAVDLRNGEIEQFQIHWMRGEPIIVRH 421 R FR +S D++LYCPN+ L + EIE FQ+HWMRGEP+IVR+ Sbjct: 1335 RAAFRENSHDDFLYCPNSACLGDNEIEHFQMHWMRGEPVIVRN 1377 Score = 60.8 bits (146), Expect(3) = 7e-22 Identities = 32/65 (49%), Positives = 41/65 (63%), Gaps = 2/65 (3%) Frame = +3 Query: 84 GGCGSKILELRRSLKANWACNLLKSADKLTSNSHFPNVDSPIGCSSCHP--FVGKVFKNL 257 GGCG++ LELRR + NW +L+KSA+ LT N P++D GCS C P G K+ Sbjct: 1272 GGCGTETLELRRIFEPNWVDHLIKSAEDLTMNFGSPDIDFSQGCSLCLPTASTGSGEKHC 1331 Query: 258 EVRRA 272 EVRRA Sbjct: 1332 EVRRA 1336 Score = 24.6 bits (52), Expect(3) = 7e-22 Identities = 13/32 (40%), Positives = 15/32 (46%), Gaps = 6/32 (18%) Frame = +2 Query: 2 GSLTDVVGRFP------DWRTTVDYSIPCPLK 79 G +V GR P W +D SIPCP K Sbjct: 1238 GLQPEVKGRIPAHDERYGWEMNMDGSIPCPPK 1269 >ref|XP_002321404.1| predicted protein [Populus trichocarpa] gi|222868400|gb|EEF05531.1| predicted protein [Populus trichocarpa] Length = 717 Score = 65.5 bits (158), Expect(3) = 4e-20 Identities = 25/40 (62%), Positives = 33/40 (82%) Frame = +2 Query: 302 FRSDSKDNYLYCPNAVDLRNGEIEQFQIHWMRGEPIIVRH 421 +R +S DN+LYCPNA+ L + + E FQ+HWMRGEP+IVRH Sbjct: 248 YRENSDDNFLYCPNALQLGDDDFEHFQLHWMRGEPVIVRH 287 Score = 45.1 bits (105), Expect(3) = 4e-20 Identities = 21/49 (42%), Positives = 30/49 (61%) Frame = +3 Query: 84 GGCGSKILELRRSLKANWACNLLKSADKLTSNSHFPNVDSPIGCSSCHP 230 GGCG++IL LRR A + ++KSA++LT N P++ C CHP Sbjct: 182 GGCGNEILTLRRIFDAKFVEEMIKSAEELTLNYQSPDIRLCEECYLCHP 230 Score = 32.3 bits (72), Expect(3) = 4e-20 Identities = 13/23 (56%), Positives = 15/23 (65%) Frame = +2 Query: 14 DVVGRFPDWRTTVDYSIPCPLKE 82 D+ +FPDWR D IPCP KE Sbjct: 158 DMSCKFPDWRAESDGRIPCPPKE 180 >emb|CAN64660.1| hypothetical protein VITISV_009615 [Vitis vinifera] Length = 1160 Score = 63.5 bits (153), Expect(2) = 1e-18 Identities = 26/40 (65%), Positives = 32/40 (80%) Frame = +2 Query: 302 FRSDSKDNYLYCPNAVDLRNGEIEQFQIHWMRGEPIIVRH 421 FR DN+LYCPNAV++ + EIE FQ HWMRGEP+IVR+ Sbjct: 489 FRKHGHDNFLYCPNAVNITDDEIEHFQRHWMRGEPVIVRN 528 Score = 54.3 bits (129), Expect(2) = 1e-18 Identities = 31/75 (41%), Positives = 45/75 (60%), Gaps = 2/75 (2%) Frame = +3 Query: 54 TIPFPVL*KSGGCGSKILELRRSLKANWACNLLKSADKLTSNSHFPNVDSPIGCSSCHPF 233 +IP P + GGCG+ ILELRR+ KANW L++S++ L + P+ + GCS C P Sbjct: 414 SIPCPPK-ERGGCGTAILELRRNFKANWVMKLIQSSEDLICHYQLPDHNFSQGCSLCWPN 472 Query: 234 V--GKVFKNLEVRRA 272 V +N E+R+A Sbjct: 473 VTGRNSEQNSEMRKA 487