BLASTX nr result

ID: Coptis25_contig00006272 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00006272
         (307 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002272717.2| PREDICTED: uncharacterized protein LOC100247...    93   2e-17
ref|XP_002263925.2| PREDICTED: uncharacterized protein LOC100258...    91   1e-16
emb|CBI40561.3| unnamed protein product [Vitis vinifera]               91   1e-16
emb|CAN64660.1| hypothetical protein VITISV_009615 [Vitis vinifera]    91   1e-16
ref|XP_002516668.1| transcription factor, putative [Ricinus comm...    82   4e-14

>ref|XP_002272717.2| PREDICTED: uncharacterized protein LOC100247074 [Vitis vinifera]
          Length = 1876

 Score = 93.2 bits (230), Expect = 2e-17
 Identities = 43/77 (55%), Positives = 52/77 (67%), Gaps = 11/77 (14%)
 Frame = +2

Query: 35   LWSDNCNTSIFNFHRSFPNPNCSCDLCLTCCLELREGH*PGGNEVYSSQRRYAERAHGQ- 211
            ++ DNCNTSI N HRS PNP+CS DLCLTCC ELR+G  PGGNE  SS +++ ER +GQ 
Sbjct: 1202 VYCDNCNTSIVNLHRSCPNPDCSYDLCLTCCRELRKGLQPGGNEAESSHQQFVERVNGQG 1261

Query: 212  ----------DSRYGWQ 232
                      D RYGW+
Sbjct: 1262 TEVKGRIPAHDERYGWE 1278


>ref|XP_002263925.2| PREDICTED: uncharacterized protein LOC100258626 [Vitis vinifera]
          Length = 1035

 Score = 90.5 bits (223), Expect = 1e-16
 Identities = 39/59 (66%), Positives = 47/59 (79%)
 Frame = +2

Query: 35  LWSDNCNTSIFNFHRSFPNPNCSCDLCLTCCLELREGH*PGGNEVYSSQRRYAERAHGQ 211
           L+ DNCNTSI +FHRS PNP+CS DLCL CC ELREG  PGG+E  +S +++ ERAHGQ
Sbjct: 310 LYCDNCNTSIVDFHRSCPNPDCSYDLCLICCRELREGRQPGGSEAETSHQQFVERAHGQ 368


>emb|CBI40561.3| unnamed protein product [Vitis vinifera]
          Length = 897

 Score = 90.5 bits (223), Expect = 1e-16
 Identities = 39/59 (66%), Positives = 47/59 (79%)
 Frame = +2

Query: 35  LWSDNCNTSIFNFHRSFPNPNCSCDLCLTCCLELREGH*PGGNEVYSSQRRYAERAHGQ 211
           L+ DNCNTSI +FHRS PNP+CS DLCL CC ELREG  PGG+E  +S +++ ERAHGQ
Sbjct: 286 LYCDNCNTSIVDFHRSCPNPDCSYDLCLICCRELREGRQPGGSEAETSHQQFVERAHGQ 344


>emb|CAN64660.1| hypothetical protein VITISV_009615 [Vitis vinifera]
          Length = 1160

 Score = 90.5 bits (223), Expect = 1e-16
 Identities = 39/59 (66%), Positives = 47/59 (79%)
 Frame = +2

Query: 35  LWSDNCNTSIFNFHRSFPNPNCSCDLCLTCCLELREGH*PGGNEVYSSQRRYAERAHGQ 211
           L+ DNCNTSI +FHRS PNP+CS DLCL CC ELREG  PGG+E  +S +++ ERAHGQ
Sbjct: 310 LYCDNCNTSIVDFHRSCPNPDCSYDLCLICCRELREGRQPGGSEAETSHQQFVERAHGQ 368


>ref|XP_002516668.1| transcription factor, putative [Ricinus communis]
           gi|223544163|gb|EEF45687.1| transcription factor,
           putative [Ricinus communis]
          Length = 939

 Score = 82.0 bits (201), Expect = 4e-14
 Identities = 36/61 (59%), Positives = 45/61 (73%)
 Frame = +2

Query: 35  LWSDNCNTSIFNFHRSFPNPNCSCDLCLTCCLELREGH*PGGNEVYSSQRRYAERAHGQD 214
           L+ DNCNTSI NFHRS  +P CS DLCLTCC E+R+G   GGN+  SS  ++ ER +GQD
Sbjct: 289 LYCDNCNTSIVNFHRSCSDPGCSYDLCLTCCSEIRKGIQSGGNDAESSLHQFVERVNGQD 348

Query: 215 S 217
           +
Sbjct: 349 T 349


Top