BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00006228
         (1191 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002263673.2| PREDICTED: putative pentatricopeptide repeat...   212   1e-52
ref|XP_002522388.1| pentatricopeptide repeat-containing protein,...   197   6e-48
ref|XP_002517667.1| pentatricopeptide repeat-containing protein,...   196   1e-47
ref|XP_002264325.1| PREDICTED: pentatricopeptide repeat-containi...   196   1e-47
ref|XP_003528352.1| PREDICTED: pentatricopeptide repeat-containi...   195   2e-47

>ref|XP_002263673.2| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g09950-like [Vitis vinifera]
          Length = 1088

 Score =  212 bits (540), Expect = 1e-52
 Identities = 134/398 (33%), Positives = 216/398 (54%), Gaps = 5/398 (1%)
 Frame = -3

Query: 1180 ERNVVSWNAMIAAYVHNGKEVDGLELFYTMKCVEFVVPDEFAFATVLTGCARVSELKLGM 1001
            ERN VS+NA++A YV  GK  + LEL++ M+  + + PD+F F T+LT CA       G 
Sbjct: 440  ERNEVSYNALLAGYVQEGKAEEALELYHDMQSEDGIQPDQFTFTTLLTLCANQRNDNQGR 499

Query: 1000 QIHAGVLVVGFEIECVLA--VCNMYLRCGEVSFAERFLRERGE-NATLKVLMIKGYVSNK 830
            QIHA ++        ++   + +MY  CG +++A+       E NA     MI+GY  N 
Sbjct: 500  QIHAHLIRANITKNIIVETELVHMYSECGRLNYAKEIFNRMAERNAYSWNSMIEGYQQNG 559

Query: 829  RCDDALRLIGS-DSNSIKFFVEDHSVIVSVLTACADRCLLKIGKQVHGIIMTLLGSHWDC 653
               +ALRL      N IK    D   + S+L++C      + G+++H  I+         
Sbjct: 560  ETQEALRLFKQMQLNGIK---PDCFSLSSMLSSCVSLSDSQKGRELHNFIV--------- 607

Query: 652  QSKDESVTVILSALIDMYCKCSSVEEAERVFGNQIPLKHVSHWNALITGYIDNGLLNNAI 473
            ++  E   ++   L+DMY KC S++ A +V+   I  K V   N +++ ++++G  N+A 
Sbjct: 608  RNTMEEEGILQVVLVDMYAKCGSMDYAWKVYDQTIK-KDVILNNVMVSAFVNSGRANDAK 666

Query: 472  EHFTRMPERNVVSWTAMISGYVKYGMPHEGLRLLAEMYSNKDSVVVQGNCVTFSVALETS 293
              F +M +RN   W ++++GY   G+  E      EM  +     ++ + +T    +   
Sbjct: 667  NLFDQMEQRNTALWNSILAGYANKGLKKESFNHFLEMLESD----IEYDVLTMVTIVNLC 722

Query: 292  SLLTALEAGKQIHAKLIRTIGKADIH-NVVVGTALVDMYSKSGNLIYAKTVFNRMAERNV 116
            S L ALE G Q+H+ +I+   K  ++ +VV+ TALVDMYSK G +  A+TVF+ M  +N+
Sbjct: 723  SSLPALEHGDQLHSLIIK---KGFVNCSVVLETALVDMYSKCGAITKARTVFDNMNGKNI 779

Query: 115  VSWTSMITGYASHGIGFQALELFHQMMAIGIEPNEVTF 2
            VSW +MI+GY+ HG   +AL L+ +M   G+ PNEVTF
Sbjct: 780  VSWNAMISGYSKHGCSKEALILYEEMPKKGMYPNEVTF 817



 Score =  153 bits (386), Expect = 9e-35
 Identities = 126/397 (31%), Positives = 185/397 (46%), Gaps = 5/397 (1%)
 Frame = -3

Query: 1189 EMPERNVVSWNAMIAAYVHNGKEVDGLELFYTMKCVEFVVPDEFAFATVLTGCARVSELK 1010
            E+   +VV+WNA+IA YV      +   +F  M  +  V PD F FA+ L  C  +    
Sbjct: 235  EIEGTSVVTWNAVIAGYVKILSWEEAWGIFDRMLKIG-VCPDNFTFASALRVCGALRSRD 293

Query: 1009 LGMQIHAGVLVVGFEIECVL--AVCNMYLRCGEVSFAERFLRERGE-NATLKVLMIKGYV 839
             G Q+H+ ++  GF+ +  +  A+ +MY +C +     +   E GE N      +I    
Sbjct: 294  GGKQVHSKLIACGFKGDTFVGNALIDMYAKCDDEESCLKVFDEMGERNQVTWNSIISAEA 353

Query: 838  SNKRCDDALRLIGSDSNSIKFFVEDHSVIVSVLTACADRCLLKIGKQVHG-IIMTLLGSH 662
                 +DAL L      S   +  +   + S+L A A    +  G+++HG ++  LL S 
Sbjct: 354  QFGHFNDALVLFLRMQES--GYKSNRFNLGSILMASAGLADIGKGRELHGHLVRNLLNSD 411

Query: 661  WDCQSKDESVTVILSALIDMYCKCSSVEEAERVFGNQIPLKHVSHWNALITGYIDNGLLN 482
                       ++ SAL+DMY KC  VEEA +VF + +    VS +NAL+ GY+  G   
Sbjct: 412  ----------IILGSALVDMYSKCGMVEEAHQVFRSLLERNEVS-YNALLAGYVQEGKAE 460

Query: 481  NAIEHFTRMPERNVVSWTAMISGYVKYGMPHEGLRLLAEMYSNKDSVVVQGNCVTFSVAL 302
             A+E +  M   +                                   +Q +  TF+  L
Sbjct: 461  EALELYHDMQSED----------------------------------GIQPDQFTFTTLL 486

Query: 301  ETSSLLTALEAGKQIHAKLIRTIGKADI-HNVVVGTALVDMYSKSGNLIYAKTVFNRMAE 125
               +       G+QIHA LIR    A+I  N++V T LV MYS+ G L YAK +FNRMAE
Sbjct: 487  TLCANQRNDNQGRQIHAHLIR----ANITKNIIVETELVHMYSECGRLNYAKEIFNRMAE 542

Query: 124  RNVVSWTSMITGYASHGIGFQALELFHQMMAIGIEPN 14
            RN  SW SMI GY  +G   +AL LF QM   GI+P+
Sbjct: 543  RNAYSWNSMIEGYQQNGETQEALRLFKQMQLNGIKPD 579



 Score =  119 bits (298), Expect = 1e-24
 Identities = 86/311 (27%), Positives = 152/311 (48%), Gaps = 36/311 (11%)
 Frame = -3

Query: 1186 MPERNVVSWNAMIAAYVHNGKEVDGLELFYTMKCVEFVVPDEFAFATVLTGCARVSELKL 1007
            M ERN  SWN+MI  Y  NG+  + L LF  M+ +  + PD F+ +++L+ C  +S+ + 
Sbjct: 540  MAERNAYSWNSMIEGYQQNGETQEALRLFKQMQ-LNGIKPDCFSLSSMLSSCVSLSDSQK 598

Query: 1006 GMQIHAGVLVVGFEIECVLAV--CNMYLRCGEVSFAERFLRER-GENATLKVLMIKGYVS 836
            G ++H  ++    E E +L V   +MY +CG + +A +   +   ++  L  +M+  +V+
Sbjct: 599  GRELHNFIVRNTMEEEGILQVVLVDMYAKCGSMDYAWKVYDQTIKKDVILNNVMVSAFVN 658

Query: 835  NKRCDDALRLI---------------------GSDSNSIKFFVE--------DHSVIVSV 743
            + R +DA  L                      G    S   F+E        D   +V++
Sbjct: 659  SGRANDAKNLFDQMEQRNTALWNSILAGYANKGLKKESFNHFLEMLESDIEYDVLTMVTI 718

Query: 742  LTACADRCLLKIGKQVHGIIMTLLGSHWDCQSKDESVTVILSALIDMYCKCSSVEEAERV 563
            +  C+    L+ G Q+H +I  +     +C        V+ +AL+DMY KC ++ +A  V
Sbjct: 719  VNLCSSLPALEHGDQLHSLI--IKKGFVNCS------VVLETALVDMYSKCGAITKARTV 770

Query: 562  FGNQIPLKHVSHWNALITGYIDNGLLNNAIEHFTRMPER----NVVSWTAMISGYVKYGM 395
            F N +  K++  WNA+I+GY  +G    A+  +  MP++    N V++ A++S     G+
Sbjct: 771  FDN-MNGKNIVSWNAMISGYSKHGCSKEALILYEEMPKKGMYPNEVTFLAILSACSHTGL 829

Query: 394  PHEGLRLLAEM 362
              EGLR+   M
Sbjct: 830  VEEGLRIFTSM 840



 Score = 68.6 bits (166), Expect = 3e-09
 Identities = 75/327 (22%), Positives = 145/327 (44%), Gaps = 13/327 (3%)
 Frame = -3

Query: 1189 EMPERNVVSWNAMIAAYVHNGKEVDGLELFYTM--KCVEFVVPDEFAFATVLTGCARVSE 1016
            +M +RN   WN+++A Y + G + +    F  M    +E+   D     T++  C+ +  
Sbjct: 671  QMEQRNTALWNSILAGYANKGLKKESFNHFLEMLESDIEY---DVLTMVTIVNLCSSLPA 727

Query: 1015 LKLGMQIHAGVLVVGFEIECVL----AVCNMYLRCGEVSFAER-FLRERGENATLKVLMI 851
            L+ G Q+H+ ++  GF + C +    A+ +MY +CG ++ A   F    G+N      MI
Sbjct: 728  LEHGDQLHSLIIKKGF-VNCSVVLETALVDMYSKCGAITKARTVFDNMNGKNIVSWNAMI 786

Query: 850  KGYVSNKRCDDALRLIGSDSNSIKFFVEDHSVIVSVLTACADRCLLKIGKQVHGIIMTLL 671
             GY  +    +AL L   +    K    +    +++L+AC+   L++ G +    I T +
Sbjct: 787  SGYSKHGCSKEALILY--EEMPKKGMYPNEVTFLAILSACSHTGLVEEGLR----IFTSM 840

Query: 670  GSHWDCQSKDESVTVILSALIDMYCKCSSVEEAERVFGNQIPLK-HVSHWNALITG---Y 503
               ++ ++K E  T     ++D+  +   +E+A+  F  ++P++  VS W AL+     +
Sbjct: 841  QEDYNIEAKAEHYT----CMVDLLGRAGRLEDAKE-FVEKMPIEPEVSTWGALLGACRVH 895

Query: 502  IDNGLLNNAIEHFTRMPERNVVSWTAMISGYVKYG--MPHEGLRLLAEMYSNKDSVVVQG 329
             D  +   A +    +  +N   +  M + Y   G     E +R + +M   K    V  
Sbjct: 896  KDMDMGRLAAQRLFELDPQNPGPYVIMSNIYAAAGRWKEVEDIRQMMKMKGVKKDPGVSW 955

Query: 328  NCVTFSVALETSSLLTALEAGKQIHAK 248
                    +E +S +    AG + H K
Sbjct: 956  --------IEINSEIQIFHAGSKTHPK 974



 Score = 65.5 bits (158), Expect = 3e-08
 Identities = 49/172 (28%), Positives = 86/172 (50%), Gaps = 4/172 (2%)
 Frame = -3

Query: 505 YIDNGLLNN---AIEHFTRMPERNVVSWTAMISGYVKYGMPHEGLRLLAEMYSNKDSVVV 335
           Y  +G L++   A + F  MPERN+ +W  MI  Y +     E LRL   M  + +    
Sbjct: 116 YARSGCLDDLCYARKLFEEMPERNLTAWNTMILAYARVDDYMEVLRLYGRMRGSGNF--- 172

Query: 334 QGNCVTFSVALETSSLLTALEAGKQIHAKLIRTIGKADIH-NVVVGTALVDMYSKSGNLI 158
             +  TF   ++    +  +   +Q+ + ++    KA ++ N+ VG ALVD Y++ G + 
Sbjct: 173 -SDKFTFPSVIKACIAMEDMGGVRQLQSSVV----KAGLNCNLFVGGALVDGYARFGWMD 227

Query: 157 YAKTVFNRMAERNVVSWTSMITGYASHGIGFQALELFHQMMAIGIEPNEVTF 2
            A T  + +   +VV+W ++I GY       +A  +F +M+ IG+ P+  TF
Sbjct: 228 DAVTSLDEIEGTSVVTWNAVIAGYVKILSWEEAWGIFDRMLKIGVCPDNFTF 279


>ref|XP_002522388.1| pentatricopeptide repeat-containing protein, putative [Ricinus
            communis] gi|223538466|gb|EEF40072.1| pentatricopeptide
            repeat-containing protein, putative [Ricinus communis]
          Length = 472

 Score =  197 bits (500), Expect = 6e-48
 Identities = 133/394 (33%), Positives = 206/394 (52%), Gaps = 3/394 (0%)
 Frame = -3

Query: 1174 NVVSWNAMIAAYVHNGKEVDGLELFYTMKCVEFVVPDEFAFATVLTGCARVSELKLGMQI 995
            N   +N++I  Y ++   +  + L Y       + P+EF F  VL  CA  S   + M +
Sbjct: 52   NKFMYNSLIRGYCNSNSPIKSMFL-YRQLIDSGLSPNEFTFPFVLKACASKSAHWMSMIV 110

Query: 994  HAGVLVVGF-EIECVL-AVCNMYLRCGEVSFAERFLRERGENATLKV-LMIKGYVSNKRC 824
            H     +GF  + CV   + N Y+ CG + +A +   +  E + +    MI GY     C
Sbjct: 111  HGHAQKLGFASLICVQNGLINAYIACGFIRYARKMFDDMSERSLVSWNSMIGGYSKLGWC 170

Query: 823  DDALRLIGSDSNSIKFFVEDHSVIVSVLTACADRCLLKIGKQVHGIIMTLLGSHWDCQSK 644
             +   L+  +   I    +D + +V++L  C+ RC + +G+ VH + + + G   D  ++
Sbjct: 171  KEVF-LLFKEMREIGTEADDFT-LVNLLLVCSRRCDINLGRFVH-LYIQITGMKIDLVAR 227

Query: 643  DESVTVILSALIDMYCKCSSVEEAERVFGNQIPLKHVSHWNALITGYIDNGLLNNAIEHF 464
            +        ALIDMY KC ++  AERVF  Q+P K+V  W ++IT Y   GL+  A + F
Sbjct: 228  N--------ALIDMYAKCGALVLAERVF-QQMPNKNVVSWTSMITAYAKQGLVEYARKSF 278

Query: 463  TRMPERNVVSWTAMISGYVKYGMPHEGLRLLAEMYSNKDSVVVQGNCVTFSVALETSSLL 284
             +MPE+NVVSW +MIS YV+ G   E L L  EM+S +    V  N  T    L     +
Sbjct: 279  DQMPEKNVVSWNSMISSYVQGGQCREALDLFHEMHSFR----VVPNEATLLSVLSACGQI 334

Query: 283  TALEAGKQIHAKLIRTIGKADIHNVVVGTALVDMYSKSGNLIYAKTVFNRMAERNVVSWT 104
              L  GK+IH  +    G + +++V +  +L+DMY+K G L  A  VFN M  +N+VSW 
Sbjct: 335  GDLVMGKKIHNYIC---GTSSMYSVTLCNSLIDMYAKCGALRIAIDVFNEMPNKNLVSWN 391

Query: 103  SMITGYASHGIGFQALELFHQMMAIGIEPNEVTF 2
             +I   A HG G +A+ELF +M A G+ P+E+TF
Sbjct: 392  VIIGALALHGYGVEAVELFRKMQAAGVWPDEITF 425



 Score = 99.0 bits (245), Expect = 2e-18
 Identities = 83/316 (26%), Positives = 141/316 (44%), Gaps = 38/316 (12%)
 Frame = -3

Query: 1189 EMPERNVVSWNAMIAAYVHNGKEVDGLELFYTMKCVEFVVPDEFAFATVLTGCARVSELK 1010
            +M ER++VSWN+MI  Y   G   +   LF  M+ +     D+F    +L  C+R  ++ 
Sbjct: 148  DMSERSLVSWNSMIGGYSKLGWCKEVFLLFKEMREIG-TEADDFTLVNLLLVCSRRCDIN 206

Query: 1009 LGMQIHAGVLVVGFEIECVL--AVCNMYLRCGEVSFAERFLRER---------------- 884
            LG  +H  + + G +I+ V   A+ +MY +CG +  AER  ++                 
Sbjct: 207  LGRFVHLYIQITGMKIDLVARNALIDMYAKCGALVLAERVFQQMPNKNVVSWTSMITAYA 266

Query: 883  ----------------GENATLKVLMIKGYVSNKRCDDALRLIGSDSNSIKFFVEDHSVI 752
                             +N      MI  YV   +C +AL L   + +S +  V + + +
Sbjct: 267  KQGLVEYARKSFDQMPEKNVVSWNSMISSYVQGGQCREALDLF-HEMHSFR-VVPNEATL 324

Query: 751  VSVLTACADRCLLKIGKQVHGIIMTLLGSHWDCQSKDESVTVILSALIDMYCKCSSVEEA 572
            +SVL+AC     L +GK++H  I         C +       + ++LIDMY KC ++  A
Sbjct: 325  LSVLSACGQIGDLVMGKKIHNYI---------CGTSSMYSVTLCNSLIDMYAKCGALRIA 375

Query: 571  ERVFGNQIPLKHVSHWNALITGYIDNGLLNNAIEHFTRMPERNV----VSWTAMISGYVK 404
              VF N++P K++  WN +I     +G    A+E F +M    V    +++  ++S    
Sbjct: 376  IDVF-NEMPNKNLVSWNVIIGALALHGYGVEAVELFRKMQAAGVWPDEITFMGLLSACSH 434

Query: 403  YGMPHEGLRLLAEMYS 356
             G+   GL    +M S
Sbjct: 435  SGLVDSGLYYFDKMSS 450


>ref|XP_002517667.1| pentatricopeptide repeat-containing protein, putative [Ricinus
            communis] gi|223543299|gb|EEF44831.1| pentatricopeptide
            repeat-containing protein, putative [Ricinus communis]
          Length = 628

 Score =  196 bits (498), Expect = 1e-47
 Identities = 130/400 (32%), Positives = 207/400 (51%), Gaps = 6/400 (1%)
 Frame = -3

Query: 1186 MPERNVVSWNAMIAAYVHNGKEVDGLELFYTMKCVEFVVPDEFAFATVLTGCARVSELKL 1007
            MPE +  SWN++IA +  + +  + L  F  M    FV+ +E+ F + L+ CA + +LK+
Sbjct: 111  MPEPDQCSWNSLIAGFAQHDRFEEALNYFVKMHRKGFVL-NEYTFGSGLSACAGLKDLKI 169

Query: 1006 GMQIHAGVLVVGFEIECVL--AVCNMYLRCGEVSFAERFLRERGE-NATLKVLMIKGYVS 836
            G QIH  +L   F ++  +  A+ ++Y +CG V  A+R      E N      +I  Y  
Sbjct: 170  GTQIHGLMLKSQFLLDVYMGSALIDIYSKCGFVDCAQRVFDGMMERNVVSWNSLITCYEQ 229

Query: 835  NKRCDDALRLIGSDSNSIKFFVEDHSVIVSVLTACADRCLLKIGKQVHGIIMTLLGSHWD 656
            N    +AL +      S   F  D   + SV++ACA     K G ++H  ++        
Sbjct: 230  NGPSREALEIFMRMMES--GFEPDEVTLASVVSACASLAAAKQGLEIHACVVK------- 280

Query: 655  CQSKDESVTVILSALIDMYCKCSSVEEAERVFGNQIPLKHVSHWNALITGYIDNGLLNNA 476
             + K     ++ +AL+DMY KC  + EA  VF +++P+++V    ++++GY     +  A
Sbjct: 281  -RDKLRDDLILSNALVDMYAKCGRINEARCVF-DRMPIRNVVSETSMVSGYAKTASVKAA 338

Query: 475  IEHFTRMPERNVVSWTAMISGYVKYGMPHEGLRLLAEMYSNKDSVVVQGNCVTFSVALET 296
               FT+M ERNVVSW A+I+GY + G   E LRL   +        +     TF   L  
Sbjct: 339  RLLFTKMIERNVVSWNALIAGYTQNGENEEALRLFRMLKRE----AICPTHYTFGNLLNA 394

Query: 295  SSLLTALEAGKQIHAKLIR---TIGKADIHNVVVGTALVDMYSKSGNLIYAKTVFNRMAE 125
             + L  L+ G+Q HA +++        +  +V VG AL+DMY K G++     +F  M E
Sbjct: 395  CANLADLQLGRQAHAHVLKHGFRFQYGEESDVFVGNALIDMYMKCGSVEEGCRIFENMVE 454

Query: 124  RNVVSWTSMITGYASHGIGFQALELFHQMMAIGIEPNEVT 5
            R+ VSW +MI GYA +G G +AL LF +M+A G +P+ VT
Sbjct: 455  RDYVSWNAMIVGYAQNGYGMEALGLFRKMLASGEKPDHVT 494



 Score =  137 bits (345), Expect = 5e-30
 Identities = 85/254 (33%), Positives = 140/254 (55%)
 Frame = -3

Query: 766 DHSVIVSVLTACADRCLLKIGKQVHGIIMTLLGSHWDCQSKDESVTVILSALIDMYCKCS 587
           D S    +L +C     L+  +++H  I+         +++      I + LID Y KC 
Sbjct: 18  DSSPFAKLLDSCLKSKSLRDTRRIHARII---------KTQFAYEVFIQNRLIDAYGKCG 68

Query: 586 SVEEAERVFGNQIPLKHVSHWNALITGYIDNGLLNNAIEHFTRMPERNVVSWTAMISGYV 407
             ++A ++F +Q+P K+V  WNA+++  + +G L+     F  MPE +  SW ++I+G+ 
Sbjct: 69  CFDDARKIF-DQMPEKNVFSWNAIVSTLVKSGFLDEGARLFVSMPEPDQCSWNSLIAGFA 127

Query: 406 KYGMPHEGLRLLAEMYSNKDSVVVQGNCVTFSVALETSSLLTALEAGKQIHAKLIRTIGK 227
           ++    E L    +M+  K  V+   N  TF   L   + L  L+ G QIH  ++++   
Sbjct: 128 QHDRFEEALNYFVKMH-RKGFVL---NEYTFGSGLSACAGLKDLKIGTQIHGLMLKSQFL 183

Query: 226 ADIHNVVVGTALVDMYSKSGNLIYAKTVFNRMAERNVVSWTSMITGYASHGIGFQALELF 47
            D++   +G+AL+D+YSK G +  A+ VF+ M ERNVVSW S+IT Y  +G   +ALE+F
Sbjct: 184 LDVY---MGSALIDIYSKCGFVDCAQRVFDGMMERNVVSWNSLITCYEQNGPSREALEIF 240

Query: 46  HQMMAIGIEPNEVT 5
            +MM  G EP+EVT
Sbjct: 241 MRMMESGFEPDEVT 254



 Score =  120 bits (301), Expect = 7e-25
 Identities = 108/393 (27%), Positives = 174/393 (44%), Gaps = 38/393 (9%)
 Frame = -3

Query: 1066 DEFAFATVLTGCARVSELKLGMQIHAGVLVVGFEIECVLA--VCNMYLRCGEVSFAERFL 893
            D   FA +L  C +   L+   +IHA ++   F  E  +   + + Y +CG    A +  
Sbjct: 18   DSSPFAKLLDSCLKSKSLRDTRRIHARIIKTQFAYEVFIQNRLIDAYGKCGCFDDARKIF 77

Query: 892  RERGE------NATLKVL--------------------------MIKGYVSNKRCDDALR 809
             +  E      NA +  L                          +I G+  + R ++AL 
Sbjct: 78   DQMPEKNVFSWNAIVSTLVKSGFLDEGARLFVSMPEPDQCSWNSLIAGFAQHDRFEEALN 137

Query: 808  LIGSDSNSIKFFVEDHSVIVSVLTACADRCLLKIGKQVHGIIMTLLGSHWDCQSKDESVT 629
                     K FV +     S L+ACA    LKIG Q+HG+++         +S+     
Sbjct: 138  YFVKMHR--KGFVLNEYTFGSGLSACAGLKDLKIGTQIHGLML---------KSQFLLDV 186

Query: 628  VILSALIDMYCKCSSVEEAERVFGNQIPLKHVSHWNALITGYIDNGLLNNAIEHFTRMPE 449
             + SALID+Y KC  V+ A+RVF   +  ++V  WN+LIT Y  NG    A+E F RM E
Sbjct: 187  YMGSALIDIYSKCGFVDCAQRVFDGMME-RNVVSWNSLITCYEQNGPSREALEIFMRMME 245

Query: 448  RNV----VSWTAMISGYVKYGMPHEGLRLLAEMYSNKDSVVVQGNCVTFSVALETSSLLT 281
                   V+  +++S         +GL + A         VV+ + +   + L  + +  
Sbjct: 246  SGFEPDEVTLASVVSACASLAAAKQGLEIHA--------CVVKRDKLRDDLILSNALVDM 297

Query: 280  ALEAGKQIHAKLIRTIGKADIHNVVVGTALVDMYSKSGNLIYAKTVFNRMAERNVVSWTS 101
              + G+   A+ +    +  I NVV  T++V  Y+K+ ++  A+ +F +M ERNVVSW +
Sbjct: 298  YAKCGRINEARCV--FDRMPIRNVVSETSMVSGYAKTASVKAARLLFTKMIERNVVSWNA 355

Query: 100  MITGYASHGIGFQALELFHQMMAIGIEPNEVTF 2
            +I GY  +G   +AL LF  +    I P   TF
Sbjct: 356  LIAGYTQNGENEEALRLFRMLKREAICPTHYTF 388



 Score = 85.5 bits (210), Expect = 2e-14
 Identities = 59/173 (34%), Positives = 87/173 (50%), Gaps = 9/173 (5%)
 Frame = -3

Query: 1189 EMPERNVVSWNAMIAAYVHNGKEVDGLELFYTMKCVEFVVPDEFAFATVLTGCARVSELK 1010
            +M ERNVVSWNA+IA Y  NG+  + L LF  +K  E + P  + F  +L  CA +++L+
Sbjct: 344  KMIERNVVSWNALIAGYTQNGENEEALRLFRMLK-REAICPTHYTFGNLLNACANLADLQ 402

Query: 1009 LGMQIHAGVLVVGF--------EIECVLAVCNMYLRCGEVSFAERFLRERGENATLK-VL 857
            LG Q HA VL  GF        ++    A+ +MY++CG V    R      E   +    
Sbjct: 403  LGRQAHAHVLKHGFRFQYGEESDVFVGNALIDMYMKCGSVEEGCRIFENMVERDYVSWNA 462

Query: 856  MIKGYVSNKRCDDALRLIGSDSNSIKFFVEDHSVIVSVLTACADRCLLKIGKQ 698
            MI GY  N    +AL L      S +    DH  ++  L AC+   L++ G++
Sbjct: 463  MIVGYAQNGYGMEALGLFRKMLASGE--KPDHVTMIGALCACSHAGLVQEGRK 513


>ref|XP_002264325.1| PREDICTED: pentatricopeptide repeat-containing protein At2g13600
            [Vitis vinifera]
          Length = 684

 Score =  196 bits (497), Expect = 1e-47
 Identities = 126/400 (31%), Positives = 209/400 (52%), Gaps = 6/400 (1%)
 Frame = -3

Query: 1186 MPERNVVSWNAMIAAYVHNGKEVDGLELFYTMKCVEFVVPDEFAFATVLTGCARVSELKL 1007
            MPE +  SWN+M++ +  + +  + LE F  M   +F++ +E++F + L+ CA + +L +
Sbjct: 107  MPEPDQCSWNSMVSGFAQHDRFEESLEYFVKMHREDFLL-NEYSFGSALSACAGLMDLNM 165

Query: 1006 GMQIHAGVLVVGFEIECVL--AVCNMYLRCGEVSFAERFLRERGE-NATLKVLMIKGYVS 836
            G Q+HA V    +  +  +  A+ +MY +CG V+ AE       E N      +I  Y  
Sbjct: 166  GTQVHALVSKSRYSTDVYMGSALIDMYSKCGSVACAEEVFSGMIERNLVTWNSLITCYEQ 225

Query: 835  NKRCDDALRLIGSDSNSIKFFVEDHSVIVSVLTACADRCLLKIGKQVHGIIMTLLGSHWD 656
            N    +AL +     +S      D   + SV++ACA  C LK G Q+H  ++        
Sbjct: 226  NGPASEALEVFVRMMDS--GLEPDEVTLASVVSACASLCALKEGLQIHARVVKT------ 277

Query: 655  CQSKDESVTVILSALIDMYCKCSSVEEAERVFGNQIPLKHVSHWNALITGYIDNGLLNNA 476
              +K     V+ +AL+DMY KCS V EA RVF +++ +++V    ++++GY     +  A
Sbjct: 278  --NKFRDDLVLGNALVDMYAKCSKVNEARRVF-DRMSIRNVVSETSMVSGYARAASVKAA 334

Query: 475  IEHFTRMPERNVVSWTAMISGYVKYGMPHEGLRLLAEMYSNKDSVVVQGNCVTFSVALET 296
               F++M +RNVVSW A+I+GY + G   E LRL   +        +     TF   L  
Sbjct: 335  RFMFSKMTQRNVVSWNALIAGYTQNGENEEALRLFRLLKRES----IWPTHYTFGNLLSA 390

Query: 295  SSLLTALEAGKQIHAKLIRT---IGKADIHNVVVGTALVDMYSKSGNLIYAKTVFNRMAE 125
             + L  L  G+Q H  +++           ++ VG +L+DMY K G++     VF +M E
Sbjct: 391  CANLADLLLGRQAHTHVLKQGFEFQSGAESDIFVGNSLIDMYMKCGSIEDGSRVFEKMKE 450

Query: 124  RNVVSWTSMITGYASHGIGFQALELFHQMMAIGIEPNEVT 5
            R+ VSW ++I GYA +G G +AL++F +M+  G +P+ VT
Sbjct: 451  RDCVSWNAIIVGYAQNGYGAEALQIFRKMLVCGEKPDHVT 490



 Score =  134 bits (338), Expect = 3e-29
 Identities = 76/207 (36%), Positives = 127/207 (61%)
 Frame = -3

Query: 625 ILSALIDMYCKCSSVEEAERVFGNQIPLKHVSHWNALITGYIDNGLLNNAIEHFTRMPER 446
           I + LID+Y KC  +++A ++F +++P ++   WN+LI+    +G L+ A   F  MPE 
Sbjct: 52  IQNRLIDVYGKCDCLDDARKLF-DRMPQRNTFTWNSLISVLTKSGFLDEAARLFGSMPEP 110

Query: 445 NVVSWTAMISGYVKYGMPHEGLRLLAEMYSNKDSVVVQGNCVTFSVALETSSLLTALEAG 266
           +  SW +M+SG+ ++    E L    +M+  +D ++   N  +F  AL   + L  L  G
Sbjct: 111 DQCSWNSMVSGFAQHDRFEESLEYFVKMH-REDFLL---NEYSFGSALSACAGLMDLNMG 166

Query: 265 KQIHAKLIRTIGKADIHNVVVGTALVDMYSKSGNLIYAKTVFNRMAERNVVSWTSMITGY 86
            Q+HA + ++    D++   +G+AL+DMYSK G++  A+ VF+ M ERN+V+W S+IT Y
Sbjct: 167 TQVHALVSKSRYSTDVY---MGSALIDMYSKCGSVACAEEVFSGMIERNLVTWNSLITCY 223

Query: 85  ASHGIGFQALELFHQMMAIGIEPNEVT 5
             +G   +ALE+F +MM  G+EP+EVT
Sbjct: 224 EQNGPASEALEVFVRMMDSGLEPDEVT 250



 Score =  117 bits (292), Expect = 7e-24
 Identities = 110/428 (25%), Positives = 177/428 (41%), Gaps = 68/428 (15%)
 Frame = -3

Query: 1081 EFVVPDEFAFATVLTGCARVSELKLGMQIHAGVLVVGFEIECVLA--VCNMYLRCGEVSF 908
            +  +P+   FA +L  C R    +    +HA +L+  F +E  +   + ++Y +C  +  
Sbjct: 9    DLYLPNSSPFAKLLDSCLRSRSARGTRLVHARILMTQFSMEIFIQNRLIDVYGKCDCLDD 68

Query: 907  AERFLRERGE------NATLKVLMIKGYVSNKRCDDALRLIGSD---------------- 794
            A +      +      N+ + VL   G++     D+A RL GS                 
Sbjct: 69   ARKLFDRMPQRNTFTWNSLISVLTKSGFL-----DEAARLFGSMPEPDQCSWNSMVSGFA 123

Query: 793  -----SNSIKFFVEDHSV--------IVSVLTACADRCLLKIGKQVHGIIMTLLGSHWDC 653
                   S+++FV+ H            S L+ACA    L +G QVH ++          
Sbjct: 124  QHDRFEESLEYFVKMHREDFLLNEYSFGSALSACAGLMDLNMGTQVHALVS--------- 174

Query: 652  QSKDESVTVILSALIDMYCKCSSVEEAERVFGNQIPLKHVSHWNALITGYIDNGLLNNAI 473
            +S+  +   + SALIDMY KC SV  AE VF   I                         
Sbjct: 175  KSRYSTDVYMGSALIDMYSKCGSVACAEEVFSGMI------------------------- 209

Query: 472  EHFTRMPERNVVSWTAMISGYVKYGMPHEGLRLLAEMYSNKDSVVVQGNCVTFSVALETS 293
                   ERN+V+W ++I+ Y + G   E L +   M  +     ++ + VT +  +   
Sbjct: 210  -------ERNLVTWNSLITCYEQNGPASEALEVFVRMMDSG----LEPDEVTLASVVSAC 258

Query: 292  SLLTALEAGKQIHAKLIRTIGKADIHNVVVGTALVDMYSKSGNLIYAKTVFNRMA----- 128
            + L AL+ G QIHA++++T    D  ++V+G ALVDMY+K   +  A+ VF+RM+     
Sbjct: 259  ASLCALKEGLQIHARVVKTNKFRD--DLVLGNALVDMYAKCSKVNEARRVFDRMSIRNVV 316

Query: 127  --------------------------ERNVVSWTSMITGYASHGIGFQALELFHQMMAIG 26
                                      +RNVVSW ++I GY  +G   +AL LF  +    
Sbjct: 317  SETSMVSGYARAASVKAARFMFSKMTQRNVVSWNALIAGYTQNGENEEALRLFRLLKRES 376

Query: 25   IEPNEVTF 2
            I P   TF
Sbjct: 377  IWPTHYTF 384



 Score = 88.6 bits (218), Expect = 3e-15
 Identities = 62/198 (31%), Positives = 97/198 (48%), Gaps = 19/198 (9%)
 Frame = -3

Query: 1189 EMPERNVVSWNAMIAAYVHNGKEVDGLELFYTMKCVEFVVPDEFAFATVLTGCARVSELK 1010
            +M +RNVVSWNA+IA Y  NG+  + L LF  +K  E + P  + F  +L+ CA +++L 
Sbjct: 340  KMTQRNVVSWNALIAGYTQNGENEEALRLFRLLK-RESIWPTHYTFGNLLSACANLADLL 398

Query: 1009 LGMQIHAGVLVVGFEIECVL--------AVCNMYLRCGEVSFAERFLRERGENATLK-VL 857
            LG Q H  VL  GFE +           ++ +MY++CG +    R   +  E   +    
Sbjct: 399  LGRQAHTHVLKQGFEFQSGAESDIFVGNSLIDMYMKCGSIEDGSRVFEKMKERDCVSWNA 458

Query: 856  MIKGYVSNKRCDDALRLIGSDSNSIKFFV----EDHSVIVSVLTACADRCLLKIGK---- 701
            +I GY  N    +AL++        K  V     DH  ++ VL AC+   L++ G+    
Sbjct: 459  IIVGYAQNGYGAEALQIFR------KMLVCGEKPDHVTMIGVLCACSHAGLVEEGRHYFF 512

Query: 700  --QVHGIIMTLLGSHWDC 653
              + HG+I   L  H+ C
Sbjct: 513  SMEEHGLIP--LKDHYTC 528


>ref|XP_003528352.1| PREDICTED: pentatricopeptide repeat-containing protein At1g31430-like
            [Glycine max]
          Length = 614

 Score =  195 bits (496), Expect = 2e-47
 Identities = 137/398 (34%), Positives = 211/398 (53%), Gaps = 11/398 (2%)
 Frame = -3

Query: 1162 WNAMIAAYVHNGKEVDGLELFYTMKCVEFVVPDEFAFATVLTGCARVSELKLGMQIHAGV 983
            +N MI A+V +G     + LF  ++    V PD + +  VL G   + E++ G ++HA V
Sbjct: 76   YNLMIKAFVKSGSFRSAISLFQQLR-EHGVWPDNYTYPYVLKGIGCIGEVREGEKVHAFV 134

Query: 982  LVVGFEIECVLAVCN----MYLRCGEVS-FAERFLRERGENATLKVLMIKGYVSNKRCDD 818
            +  G E +    VCN    MY   G V  F + F      +A    +MI GYV  KR ++
Sbjct: 135  VKTGLEFDPY--VCNSFMDMYAELGLVEGFTQVFEEMPDRDAVSWNIMISGYVRCKRFEE 192

Query: 817  AL---RLIGSDSNSIKFFVEDHSVIVSVLTACADRCLLKIGKQVHGIIMTLLGSHWDCQS 647
            A+   R + ++SN       + + +VS L+ACA    L++GK++H  I + L        
Sbjct: 193  AVDVYRRMWTESNE----KPNEATVVSTLSACAVLRNLELGKEIHDYIASEL-------- 240

Query: 646  KDESVTVILSALIDMYCKCSSVEEAERVFGNQIPLKHVSHWNALITGYIDNGLLNNAIEH 467
              +  T++ +AL+DMYCKC  V  A  +F + + +K+V+ W +++TGY+  G L+ A   
Sbjct: 241  --DLTTIMGNALLDMYCKCGHVSVAREIF-DAMTVKNVNCWTSMVTGYVICGQLDQARNL 297

Query: 466  FTRMPERNVVSWTAMISGYVKYGMPHEGLRLLAEMYSN---KDSVVVQGNCVTFSVALET 296
            F R P R++V WTAMI+GYV++    E + L  EM       D  +V    VT       
Sbjct: 298  FERSPSRDIVLWTAMINGYVQFNRFEETIALFGEMQIRGVKPDKFIV----VTLLTGCAQ 353

Query: 295  SSLLTALEAGKQIHAKLIRTIGKADIHNVVVGTALVDMYSKSGNLIYAKTVFNRMAERNV 116
            S    ALE GK IH  +     K D    VVGTAL++MY+K G +  +  +FN + E++ 
Sbjct: 354  SG---ALEQGKWIHNYIDENRIKVD---AVVGTALIEMYAKCGCIEKSFEIFNGLKEKDT 407

Query: 115  VSWTSMITGYASHGIGFQALELFHQMMAIGIEPNEVTF 2
             SWTS+I G A +G   +ALELF  M   G++P+++TF
Sbjct: 408  TSWTSIICGLAMNGKPSEALELFKAMQTCGLKPDDITF 445



 Score =  107 bits (268), Expect = 5e-21
 Identities = 83/316 (26%), Positives = 143/316 (45%), Gaps = 38/316 (12%)
 Frame = -3

Query: 1189 EMPERNVVSWNAMIAAYVHNGKEVDGLELFYTMKCVEFVVPDEFAFATVLTGCARVSELK 1010
            EMP+R+ VSWN MI+ YV   +  + ++++  M       P+E    + L+ CA +  L+
Sbjct: 168  EMPDRDAVSWNIMISGYVRCKRFEEAVDVYRRMWTESNEKPNEATVVSTLSACAVLRNLE 227

Query: 1009 LGMQIHAGVLVVGFEIECVL--AVCNMYLRCGEVSFAER--------------------- 899
            LG +IH   +    ++  ++  A+ +MY +CG VS A                       
Sbjct: 228  LGKEIH-DYIASELDLTTIMGNALLDMYCKCGHVSVAREIFDAMTVKNVNCWTSMVTGYV 286

Query: 898  -----------FLRERGENATLKVLMIKGYVSNKRCDDALRLIGSDSNSIKFFVEDHSVI 752
                       F R    +  L   MI GYV   R ++ + L G     I+    D  ++
Sbjct: 287  ICGQLDQARNLFERSPSRDIVLWTAMINGYVQFNRFEETIALFG--EMQIRGVKPDKFIV 344

Query: 751  VSVLTACADRCLLKIGKQVHGIIMTLLGSHWDCQSKDESVTVILSALIDMYCKCSSVEEA 572
            V++LT CA    L+ GK +H  I          +++ +   V+ +ALI+MY KC  +E++
Sbjct: 345  VTLLTGCAQSGALEQGKWIHNYI---------DENRIKVDAVVGTALIEMYAKCGCIEKS 395

Query: 571  ERVFGNQIPLKHVSHWNALITGYIDNGLLNNAIEHFTRMP----ERNVVSWTAMISGYVK 404
              +F N +  K  + W ++I G   NG  + A+E F  M     + + +++ A++S    
Sbjct: 396  FEIF-NGLKEKDTTSWTSIICGLAMNGKPSEALELFKAMQTCGLKPDDITFVAVLSACSH 454

Query: 403  YGMPHEGLRLLAEMYS 356
             G+  EG +L   M S
Sbjct: 455  AGLVEEGRKLFHSMSS 470