BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00006190
         (2039 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002279821.1| PREDICTED: pentatricopeptide repeat-containi...   959   0.0  
emb|CBI36158.3| unnamed protein product [Vitis vinifera]              959   0.0  
ref|XP_002528197.1| pentatricopeptide repeat-containing protein,...   920   0.0  
ref|XP_003597780.1| Beta-D-galactosidase [Medicago truncatula] g...   919   0.0  
ref|XP_002299640.1| predicted protein [Populus trichocarpa] gi|2...   905   0.0  

>ref|XP_002279821.1| PREDICTED: pentatricopeptide repeat-containing protein At3g16010-like
            [Vitis vinifera]
          Length = 725

 Score =  959 bits (2479), Expect = 0.0
 Identities = 465/621 (74%), Positives = 541/621 (87%)
 Frame = -3

Query: 1863 MFSTSIMISKRGISTTPQLYQRIKQTDNEIVKMFQLPTPMNDPQQHNPKHSRTNNNRGPV 1684
            M S SI + +R IST P L QRIKQT++EIV+MF+L +P  D  Q  P + +   N   V
Sbjct: 1    MISGSIPL-RRMISTLPHLSQRIKQTESEIVQMFKLSSP-KDEIQRLPMNQKFPRNNPSV 58

Query: 1683 RLLDERFIRILKIFKWGPDSEKALEVLMLKLDHRLVREVMKINVEITVKLHFFKWAGKRK 1504
            R LDERFIRILKIFKWGPD+EKALEVL LK+DHRLVREV+KI+VEI VK+ FFKWAGKR+
Sbjct: 59   RTLDERFIRILKIFKWGPDAEKALEVLKLKVDHRLVREVLKIDVEIHVKIQFFKWAGKRR 118

Query: 1503 NFEHDSSTYMALVHSLDECGRVGELWKTVQDMVRSSCIIGPAELCEIVRILGKAKMVNKA 1324
            NFEHDS+TYMAL+H LDE G +GE+WKT+Q+MVRS+C+IGPA+L EIV++LGKAKMVNKA
Sbjct: 119  NFEHDSTTYMALIHCLDEAGMLGEMWKTIQEMVRSTCVIGPADLSEIVKVLGKAKMVNKA 178

Query: 1323 LSIFYQIKARKCRPTSMAYNSMILMLMQEGHHNKIHELYIEMCNEGNCLPDTVTYSALIS 1144
            LSIFYQIK RKC+PTS  YNSMILMLMQEGHH K+HELY EMCNEG+CLPDTVTYSALI+
Sbjct: 179  LSIFYQIKGRKCKPTSNTYNSMILMLMQEGHHEKVHELYNEMCNEGDCLPDTVTYSALIA 238

Query: 1143 TFGKLGREDSAVRLFDEMKENGLQPTAKIYTTLISIYFKMGKDEKALGLFREMKEKHCTR 964
             FGKLGR+DSA+ LFDEMKENGL PTAKIYTT++ IYFK+G+ EKALGL +EMKEK C  
Sbjct: 239  AFGKLGRDDSAISLFDEMKENGLHPTAKIYTTILGIYFKLGRVEKALGLVQEMKEKGCAL 298

Query: 963  TVFTYTELIRGLGTAGRIEEAYGMFLSMREDGCRPDVVLMNNVINVFGRAGRLGDAMKVF 784
            TV+TYTELI+G+G AG++EEAY +F++M ++GC+PDVVL+NN+IN+ G+AGRL DA+K+F
Sbjct: 299  TVYTYTELIKGVGKAGKVEEAYSIFMNMLKEGCKPDVVLINNLINLLGKAGRLADAIKLF 358

Query: 783  EDMRSFQCSPNVVTYNTMIKALFESKAPVSEVASWLEKMKENGITPSDFTYSILIDGFCK 604
            E+M S QC+PNVVTYNT+IKALFESKA  SE   W EKMKENG+ PS FTYSILIDGFCK
Sbjct: 359  EEMESLQCTPNVVTYNTVIKALFESKARASEAFLWYEKMKENGVVPSSFTYSILIDGFCK 418

Query: 603  TNRVEKALLLLEEMDEKGFPPCPSAYCSLIDALGKAKRYEAANELFQELKENCGSSSSRV 424
            TNRVEKALLLLEEMDEKGF PCP+AYCSLI+ALGKAKRYEAANELFQEL+ENCG SS+RV
Sbjct: 419  TNRVEKALLLLEEMDEKGFAPCPAAYCSLINALGKAKRYEAANELFQELRENCGYSSARV 478

Query: 423  YAVMIKHFGKCGRLGDAIDLFNEMRKLGCSPDVYAYNSLMSGMVRGGMIDEAHSLLQTME 244
            YAVMIKH GKCGRL +A+DLFNEM+KLGC+PDVYAYN+LMSGMVR GM DEAHSLL+TME
Sbjct: 479  YAVMIKHLGKCGRLSEAVDLFNEMKKLGCNPDVYAYNALMSGMVRVGMTDEAHSLLRTME 538

Query: 243  EEGSVPDINSHNIILYGLARSGSPNRAMEMFMKMKNANIKPDSVSYNTVLGCLSHAGMFE 64
            E G  PD+NSHNIIL G AR+G P  A+EMF +MKN+ IKPD VSYNTVLGCLS AGMFE
Sbjct: 539  ENGCTPDLNSHNIILNGFARTGGPKGAIEMFTRMKNSKIKPDVVSYNTVLGCLSRAGMFE 598

Query: 63   EAVRLMKEMSSNGFDYDLITY 1
            EA +LMKEM+S GF+YDLITY
Sbjct: 599  EAAKLMKEMNSKGFEYDLITY 619



 Score =  106 bits (264), Expect = 3e-20
 Identities = 84/312 (26%), Positives = 141/312 (45%), Gaps = 10/312 (3%)
 Frame = -3

Query: 1623 EKALEVLMLKLDHRLVREVMKINVEITVKLHFFKWAGKRKNFEHDSS--------TYMAL 1468
            E+A  + M  L      +V+ IN  I +     + A   K FE   S        TY  +
Sbjct: 317  EEAYSIFMNMLKEGCKPDVVLINNLINLLGKAGRLADAIKLFEEMESLQCTPNVVTYNTV 376

Query: 1467 VHSLDEC-GRVGELWKTVQDMVRSSCIIGPAELCEIVRILGKAKMVNKALSIFYQIKARK 1291
            + +L E   R  E +   + M  +  +        ++    K   V KAL +  ++  + 
Sbjct: 377  IKALFESKARASEAFLWYEKMKENGVVPSSFTYSILIDGFCKTNRVEKALLLLEEMDEKG 436

Query: 1290 CRPTSMAYNSMILMLMQEGHHNKIHELYIEMCNEGNC-LPDTVTYSALISTFGKLGREDS 1114
              P   AY S+I  L +   +   +EL+ E+    NC       Y+ +I   GK GR   
Sbjct: 437  FAPCPAAYCSLINALGKAKRYEAANELFQEL--RENCGYSSARVYAVMIKHLGKCGRLSE 494

Query: 1113 AVRLFDEMKENGLQPTAKIYTTLISIYFKMGKDEKALGLFREMKEKHCTRTVFTYTELIR 934
            AV LF+EMK+ G  P    Y  L+S   ++G  ++A  L R M+E  CT  + ++  ++ 
Sbjct: 495  AVDLFNEMKKLGCNPDVYAYNALMSGMVRVGMTDEAHSLLRTMEENGCTPDLNSHNIILN 554

Query: 933  GLGTAGRIEEAYGMFLSMREDGCRPDVVLMNNVINVFGRAGRLGDAMKVFEDMRSFQCSP 754
            G    G  + A  MF  M+    +PDVV  N V+    RAG   +A K+ ++M S     
Sbjct: 555  GFARTGGPKGAIEMFTRMKNSKIKPDVVSYNTVLGCLSRAGMFEEAAKLMKEMNSKGFEY 614

Query: 753  NVVTYNTMIKAL 718
            +++TY+++++A+
Sbjct: 615  DLITYSSILEAV 626


>emb|CBI36158.3| unnamed protein product [Vitis vinifera]
          Length = 638

 Score =  959 bits (2479), Expect = 0.0
 Identities = 465/621 (74%), Positives = 541/621 (87%)
 Frame = -3

Query: 1863 MFSTSIMISKRGISTTPQLYQRIKQTDNEIVKMFQLPTPMNDPQQHNPKHSRTNNNRGPV 1684
            M S SI + +R IST P L QRIKQT++EIV+MF+L +P  D  Q  P + +   N   V
Sbjct: 1    MISGSIPL-RRMISTLPHLSQRIKQTESEIVQMFKLSSP-KDEIQRLPMNQKFPRNNPSV 58

Query: 1683 RLLDERFIRILKIFKWGPDSEKALEVLMLKLDHRLVREVMKINVEITVKLHFFKWAGKRK 1504
            R LDERFIRILKIFKWGPD+EKALEVL LK+DHRLVREV+KI+VEI VK+ FFKWAGKR+
Sbjct: 59   RTLDERFIRILKIFKWGPDAEKALEVLKLKVDHRLVREVLKIDVEIHVKIQFFKWAGKRR 118

Query: 1503 NFEHDSSTYMALVHSLDECGRVGELWKTVQDMVRSSCIIGPAELCEIVRILGKAKMVNKA 1324
            NFEHDS+TYMAL+H LDE G +GE+WKT+Q+MVRS+C+IGPA+L EIV++LGKAKMVNKA
Sbjct: 119  NFEHDSTTYMALIHCLDEAGMLGEMWKTIQEMVRSTCVIGPADLSEIVKVLGKAKMVNKA 178

Query: 1323 LSIFYQIKARKCRPTSMAYNSMILMLMQEGHHNKIHELYIEMCNEGNCLPDTVTYSALIS 1144
            LSIFYQIK RKC+PTS  YNSMILMLMQEGHH K+HELY EMCNEG+CLPDTVTYSALI+
Sbjct: 179  LSIFYQIKGRKCKPTSNTYNSMILMLMQEGHHEKVHELYNEMCNEGDCLPDTVTYSALIA 238

Query: 1143 TFGKLGREDSAVRLFDEMKENGLQPTAKIYTTLISIYFKMGKDEKALGLFREMKEKHCTR 964
             FGKLGR+DSA+ LFDEMKENGL PTAKIYTT++ IYFK+G+ EKALGL +EMKEK C  
Sbjct: 239  AFGKLGRDDSAISLFDEMKENGLHPTAKIYTTILGIYFKLGRVEKALGLVQEMKEKGCAL 298

Query: 963  TVFTYTELIRGLGTAGRIEEAYGMFLSMREDGCRPDVVLMNNVINVFGRAGRLGDAMKVF 784
            TV+TYTELI+G+G AG++EEAY +F++M ++GC+PDVVL+NN+IN+ G+AGRL DA+K+F
Sbjct: 299  TVYTYTELIKGVGKAGKVEEAYSIFMNMLKEGCKPDVVLINNLINLLGKAGRLADAIKLF 358

Query: 783  EDMRSFQCSPNVVTYNTMIKALFESKAPVSEVASWLEKMKENGITPSDFTYSILIDGFCK 604
            E+M S QC+PNVVTYNT+IKALFESKA  SE   W EKMKENG+ PS FTYSILIDGFCK
Sbjct: 359  EEMESLQCTPNVVTYNTVIKALFESKARASEAFLWYEKMKENGVVPSSFTYSILIDGFCK 418

Query: 603  TNRVEKALLLLEEMDEKGFPPCPSAYCSLIDALGKAKRYEAANELFQELKENCGSSSSRV 424
            TNRVEKALLLLEEMDEKGF PCP+AYCSLI+ALGKAKRYEAANELFQEL+ENCG SS+RV
Sbjct: 419  TNRVEKALLLLEEMDEKGFAPCPAAYCSLINALGKAKRYEAANELFQELRENCGYSSARV 478

Query: 423  YAVMIKHFGKCGRLGDAIDLFNEMRKLGCSPDVYAYNSLMSGMVRGGMIDEAHSLLQTME 244
            YAVMIKH GKCGRL +A+DLFNEM+KLGC+PDVYAYN+LMSGMVR GM DEAHSLL+TME
Sbjct: 479  YAVMIKHLGKCGRLSEAVDLFNEMKKLGCNPDVYAYNALMSGMVRVGMTDEAHSLLRTME 538

Query: 243  EEGSVPDINSHNIILYGLARSGSPNRAMEMFMKMKNANIKPDSVSYNTVLGCLSHAGMFE 64
            E G  PD+NSHNIIL G AR+G P  A+EMF +MKN+ IKPD VSYNTVLGCLS AGMFE
Sbjct: 539  ENGCTPDLNSHNIILNGFARTGGPKGAIEMFTRMKNSKIKPDVVSYNTVLGCLSRAGMFE 598

Query: 63   EAVRLMKEMSSNGFDYDLITY 1
            EA +LMKEM+S GF+YDLITY
Sbjct: 599  EAAKLMKEMNSKGFEYDLITY 619



 Score =  106 bits (264), Expect = 3e-20
 Identities = 84/312 (26%), Positives = 141/312 (45%), Gaps = 10/312 (3%)
 Frame = -3

Query: 1623 EKALEVLMLKLDHRLVREVMKINVEITVKLHFFKWAGKRKNFEHDSS--------TYMAL 1468
            E+A  + M  L      +V+ IN  I +     + A   K FE   S        TY  +
Sbjct: 317  EEAYSIFMNMLKEGCKPDVVLINNLINLLGKAGRLADAIKLFEEMESLQCTPNVVTYNTV 376

Query: 1467 VHSLDEC-GRVGELWKTVQDMVRSSCIIGPAELCEIVRILGKAKMVNKALSIFYQIKARK 1291
            + +L E   R  E +   + M  +  +        ++    K   V KAL +  ++  + 
Sbjct: 377  IKALFESKARASEAFLWYEKMKENGVVPSSFTYSILIDGFCKTNRVEKALLLLEEMDEKG 436

Query: 1290 CRPTSMAYNSMILMLMQEGHHNKIHELYIEMCNEGNC-LPDTVTYSALISTFGKLGREDS 1114
              P   AY S+I  L +   +   +EL+ E+    NC       Y+ +I   GK GR   
Sbjct: 437  FAPCPAAYCSLINALGKAKRYEAANELFQEL--RENCGYSSARVYAVMIKHLGKCGRLSE 494

Query: 1113 AVRLFDEMKENGLQPTAKIYTTLISIYFKMGKDEKALGLFREMKEKHCTRTVFTYTELIR 934
            AV LF+EMK+ G  P    Y  L+S   ++G  ++A  L R M+E  CT  + ++  ++ 
Sbjct: 495  AVDLFNEMKKLGCNPDVYAYNALMSGMVRVGMTDEAHSLLRTMEENGCTPDLNSHNIILN 554

Query: 933  GLGTAGRIEEAYGMFLSMREDGCRPDVVLMNNVINVFGRAGRLGDAMKVFEDMRSFQCSP 754
            G    G  + A  MF  M+    +PDVV  N V+    RAG   +A K+ ++M S     
Sbjct: 555  GFARTGGPKGAIEMFTRMKNSKIKPDVVSYNTVLGCLSRAGMFEEAAKLMKEMNSKGFEY 614

Query: 753  NVVTYNTMIKAL 718
            +++TY+++++A+
Sbjct: 615  DLITYSSILEAV 626


>ref|XP_002528197.1| pentatricopeptide repeat-containing protein, putative [Ricinus
            communis] gi|223532409|gb|EEF34204.1| pentatricopeptide
            repeat-containing protein, putative [Ricinus communis]
          Length = 642

 Score =  920 bits (2377), Expect = 0.0
 Identities = 450/623 (72%), Positives = 527/623 (84%), Gaps = 1/623 (0%)
 Frame = -3

Query: 1866 KMFSTSIMISKRGISTTPQLYQRIKQTDNEIVKMFQLPTPMNDPQQHNPKHSRTNNNRGP 1687
            K F  SI++ KR IST+P LY+RIKQTDNEIV MF++P+ MN+  Q+ P + + +     
Sbjct: 3    KAFVKSIVL-KRSISTSPHLYERIKQTDNEIVNMFRVPS-MNNKMQNLPMNRKFSGKDTS 60

Query: 1686 VRLLDERFIRILKIFKWGPDSEKALEVLMLKLDHRLVREVMKINVEITVKLHFFKWAGKR 1507
             R LDERFIRILKIFKWGPD+EKALEVL LK+DHRLV EV+KI+VEI VK+ FFKWAGKR
Sbjct: 61   TRKLDERFIRILKIFKWGPDAEKALEVLKLKVDHRLVHEVLKIDVEINVKIQFFKWAGKR 120

Query: 1506 KNFEHDSSTYMALVHSLDECGRVGELWKTVQDMVRSS-CIIGPAELCEIVRILGKAKMVN 1330
            +NFEHDSS++MAL+HSLDE G  GE+WKT+QDMVRSS C+I    L EIV++LGKAKMVN
Sbjct: 121  RNFEHDSSSFMALIHSLDEAGFYGEMWKTIQDMVRSSTCVISSVYLSEIVKLLGKAKMVN 180

Query: 1329 KALSIFYQIKARKCRPTSMAYNSMILMLMQEGHHNKIHELYIEMCNEGNCLPDTVTYSAL 1150
            KALS+FYQIK RKC+P +  YNSMILML QEGH  K+HE+Y EMCN+GNC PDTVTYSAL
Sbjct: 181  KALSVFYQIKGRKCKPAATTYNSMILMLKQEGHLEKVHEIYNEMCNDGNCFPDTVTYSAL 240

Query: 1149 ISTFGKLGREDSAVRLFDEMKENGLQPTAKIYTTLISIYFKMGKDEKALGLFREMKEKHC 970
            IS FGKLG  DSA+RLFDEMKENGL PTAKIYTTL+ IYFK+ K EKAL + +EMK+K C
Sbjct: 241  ISAFGKLGHYDSAIRLFDEMKENGLYPTAKIYTTLLGIYFKLDKVEKALDVIKEMKDKGC 300

Query: 969  TRTVFTYTELIRGLGTAGRIEEAYGMFLSMREDGCRPDVVLMNNVINVFGRAGRLGDAMK 790
            T TVFTYTE I+GLG AGR+++AY +FL M +DGC+PDVVL+N++IN+ G+ GRL   +K
Sbjct: 301  TLTVFTYTEWIKGLGKAGRVDDAYRVFLDMIKDGCKPDVVLINSLINILGKVGRLEVTLK 360

Query: 789  VFEDMRSFQCSPNVVTYNTMIKALFESKAPVSEVASWLEKMKENGITPSDFTYSILIDGF 610
            +F  M S+QC PNVVTYNT+IKALFE KAP SE ASW EKMK  GI PS FTYSILIDGF
Sbjct: 361  LFRKMESWQCKPNVVTYNTVIKALFECKAPASEAASWFEKMKGCGIAPSSFTYSILIDGF 420

Query: 609  CKTNRVEKALLLLEEMDEKGFPPCPSAYCSLIDALGKAKRYEAANELFQELKENCGSSSS 430
            CKTNR+EKALLLLEEMDEKGFPPCP+AYCSLI++LGK KRYEAANELF ELKENCG SS+
Sbjct: 421  CKTNRIEKALLLLEEMDEKGFPPCPAAYCSLINSLGKVKRYEAANELFLELKENCGHSSA 480

Query: 429  RVYAVMIKHFGKCGRLGDAIDLFNEMRKLGCSPDVYAYNSLMSGMVRGGMIDEAHSLLQT 250
            RVYAVMIKHFGKCGRL +A+DLFNEM KLG  PDVYAYN+LMSGMVR GMIDEA SLL+T
Sbjct: 481  RVYAVMIKHFGKCGRLSEAVDLFNEMEKLGSKPDVYAYNALMSGMVRAGMIDEAQSLLRT 540

Query: 249  MEEEGSVPDINSHNIILYGLARSGSPNRAMEMFMKMKNANIKPDSVSYNTVLGCLSHAGM 70
            M+E G  PD+NSHNIIL GLAR+G P+RA+EMF KMK++ IKPD+VSYNTVLGCLSHAG+
Sbjct: 541  MDENGCSPDLNSHNIILNGLARTGVPDRAIEMFAKMKSSIIKPDAVSYNTVLGCLSHAGL 600

Query: 69   FEEAVRLMKEMSSNGFDYDLITY 1
            FEEA +LM+EM+  GF+Y+ ITY
Sbjct: 601  FEEAAKLMREMNLKGFEYNNITY 623



 Score =  135 bits (341), Expect = 3e-29
 Identities = 102/408 (25%), Positives = 182/408 (44%), Gaps = 1/408 (0%)
 Frame = -3

Query: 1491 DSSTYMALVHSLDECGRVGELWKTVQDMVRSSCIIGPAELCEIVRILGKAKMVNKALSIF 1312
            D+ TY AL+ +  + G      +   +M  +           ++ I  K   V KAL + 
Sbjct: 233  DTVTYSALISAFGKLGHYDSAIRLFDEMKENGLYPTAKIYTTLLGIYFKLDKVEKALDVI 292

Query: 1311 YQIKARKCRPTSMAYNSMILMLMQEGHHNKIHELYIEMCNEGNCLPDTVTYSALISTFGK 1132
             ++K + C  T   Y   I  L + G  +  + ++++M  +G C PD V  ++LI+  GK
Sbjct: 293  KEMKDKGCTLTVFTYTEWIKGLGKAGRVDDAYRVFLDMIKDG-CKPDVVLINSLINILGK 351

Query: 1131 LGREDSAVRLFDEMKENGLQPTAKIYTTLISIYFKM-GKDEKALGLFREMKEKHCTRTVF 955
            +GR +  ++LF +M+    +P    Y T+I   F+      +A   F +MK      + F
Sbjct: 352  VGRLEVTLKLFRKMESWQCKPNVVTYNTVIKALFECKAPASEAASWFEKMKGCGIAPSSF 411

Query: 954  TYTELIRGLGTAGRIEEAYGMFLSMREDGCRPDVVLMNNVINVFGRAGRLGDAMKVFEDM 775
            TY+ LI G     RIE+A  +   M E G  P      ++IN  G+  R   A ++F ++
Sbjct: 412  TYSILIDGFCKTNRIEKALLLLEEMDEKGFPPCPAAYCSLINSLGKVKRYEAANELFLEL 471

Query: 774  RSFQCSPNVVTYNTMIKALFESKAPVSEVASWLEKMKENGITPSDFTYSILIDGFCKTNR 595
            +      +   Y  MIK  F     +SE      +M++ G  P  + Y+ L+ G  +   
Sbjct: 472  KENCGHSSARVYAVMIKH-FGKCGRLSEAVDLFNEMEKLGSKPDVYAYNALMSGMVRAGM 530

Query: 594  VEKALLLLEEMDEKGFPPCPSAYCSLIDALGKAKRYEAANELFQELKENCGSSSSRVYAV 415
            +++A  LL  MDE G  P  +++  +++ L +    + A E+F ++K +     +  Y  
Sbjct: 531  IDEAQSLLRTMDENGCSPDLNSHNIILNGLARTGVPDRAIEMFAKMKSSIIKPDAVSYNT 590

Query: 414  MIKHFGKCGRLGDAIDLFNEMRKLGCSPDVYAYNSLMSGMVRGGMIDE 271
            ++      G   +A  L  EM   G   +   Y S++  +   G +DE
Sbjct: 591  VLGCLSHAGLFEEAAKLMREMNLKGFEYNNITYTSILEAV---GKVDE 635



 Score =  102 bits (254), Expect = 4e-19
 Identities = 76/270 (28%), Positives = 127/270 (47%), Gaps = 7/270 (2%)
 Frame = -3

Query: 1482 TYMALVHSLDEC-GRVGELWKTVQDMVRSSCIIGPAELCEIVRILG--KAKMVNKALSIF 1312
            TY  ++ +L EC     E     + M    C I P+     + I G  K   + KAL + 
Sbjct: 376  TYNTVIKALFECKAPASEAASWFEKM--KGCGIAPSSFTYSILIDGFCKTNRIEKALLLL 433

Query: 1311 YQIKARKCRPTSMAYNSMILMLMQEGHHNKIHELYIEMCNEGNCLPDTV-TYSALISTFG 1135
             ++  +   P   AY S+I  L +   +   +EL++E+  + NC   +   Y+ +I  FG
Sbjct: 434  EEMDEKGFPPCPAAYCSLINSLGKVKRYEAANELFLEL--KENCGHSSARVYAVMIKHFG 491

Query: 1134 KLGREDSAVRLFDEMKENGLQPTAKIYTTLISIYFKMGKDEKALGLFREMKEKHCTRTVF 955
            K GR   AV LF+EM++ G +P    Y  L+S   + G  ++A  L R M E  C+  + 
Sbjct: 492  KCGRLSEAVDLFNEMEKLGSKPDVYAYNALMSGMVRAGMIDEAQSLLRTMDENGCSPDLN 551

Query: 954  TYTELIRGLGTAGRIEEAYGMFLSMREDGCRPDVVLMNNVINVFGRAGRLGDAMKVFEDM 775
            ++  ++ GL   G  + A  MF  M+    +PD V  N V+     AG   +A K+  +M
Sbjct: 552  SHNIILNGLARTGVPDRAIEMFAKMKSSIIKPDAVSYNTVLGCLSHAGLFEEAAKLMREM 611

Query: 774  RSFQCSPNVVTYNTMIKA---LFESKAPVS 694
                   N +TY ++++A   + E +AP +
Sbjct: 612  NLKGFEYNNITYTSILEAVGKVDEDRAPAA 641


>ref|XP_003597780.1| Beta-D-galactosidase [Medicago truncatula]
            gi|357455013|ref|XP_003597787.1| Pentatricopeptide
            repeat-containing protein [Medicago truncatula]
            gi|355486828|gb|AES68031.1| Beta-D-galactosidase
            [Medicago truncatula] gi|355486835|gb|AES68038.1|
            Pentatricopeptide repeat-containing protein [Medicago
            truncatula]
          Length = 639

 Score =  919 bits (2374), Expect = 0.0
 Identities = 449/617 (72%), Positives = 528/617 (85%), Gaps = 4/617 (0%)
 Frame = -3

Query: 1839 SKRGISTTPQLYQRIKQTDNEIVKMFQLPTPMNDPQQHN---PKHSRTNNNRGP-VRLLD 1672
            ++R IST+    QR+KQT+NEIVKMF+LP    D Q+ N   P   R    + P  R LD
Sbjct: 8    ARRFISTSTPFTQRLKQTENEIVKMFRLP----DSQEENHYVPMEGRRVLRKDPNARKLD 63

Query: 1671 ERFIRILKIFKWGPDSEKALEVLMLKLDHRLVREVMKINVEITVKLHFFKWAGKRKNFEH 1492
            ERFIRILKIFKWGPD+EKALEVL LKLD RLVREV+KI+VE+ VK+ FFKWAGK++NFEH
Sbjct: 64   ERFIRILKIFKWGPDAEKALEVLKLKLDIRLVREVLKIDVEVHVKIQFFKWAGKKRNFEH 123

Query: 1491 DSSTYMALVHSLDECGRVGELWKTVQDMVRSSCIIGPAELCEIVRILGKAKMVNKALSIF 1312
            DS+TYMAL+  LDE   VGELW+T+QDMV+S C IGP+EL EIV+ILG+ KMVNKALSIF
Sbjct: 124  DSTTYMALIRCLDENRLVGELWRTIQDMVKSPCAIGPSELSEIVKILGRVKMVNKALSIF 183

Query: 1311 YQIKARKCRPTSMAYNSMILMLMQEGHHNKIHELYIEMCNEGNCLPDTVTYSALISTFGK 1132
            YQ+K RKCRPT+  YNS+ILMLMQEGHH K+HELY EMC+EG+C PDTVTYSALIS FGK
Sbjct: 184  YQVKGRKCRPTAGTYNSVILMLMQEGHHEKVHELYNEMCSEGHCFPDTVTYSALISAFGK 243

Query: 1131 LGREDSAVRLFDEMKENGLQPTAKIYTTLISIYFKMGKDEKALGLFREMKEKHCTRTVFT 952
            L R+DSAVRLFDEMKENGLQPTAKIYTTL+ IYFK+GK E+AL L  EM+ + C  TV+T
Sbjct: 244  LNRDDSAVRLFDEMKENGLQPTAKIYTTLMGIYFKLGKVEEALNLVHEMRMRRCVPTVYT 303

Query: 951  YTELIRGLGTAGRIEEAYGMFLSMREDGCRPDVVLMNNVINVFGRAGRLGDAMKVFEDMR 772
            YTELIRGLG +GR+E+AYG++ +M +DGC+PDVVLMNN+IN+ GR+ RL +A+++FE+MR
Sbjct: 304  YTELIRGLGKSGRVEDAYGVYKNMLKDGCKPDVVLMNNLINILGRSDRLKEAVELFEEMR 363

Query: 771  SFQCSPNVVTYNTMIKALFESKAPVSEVASWLEKMKENGITPSDFTYSILIDGFCKTNRV 592
               C+PNVVTYNT+IK+LFE KAP SE +SWLE+MK++G+ PS FTYSILIDGFCKTNRV
Sbjct: 364  LLNCTPNVVTYNTIIKSLFEDKAPPSEASSWLERMKKDGVVPSSFTYSILIDGFCKTNRV 423

Query: 591  EKALLLLEEMDEKGFPPCPSAYCSLIDALGKAKRYEAANELFQELKENCGSSSSRVYAVM 412
            EKALLLLEEMDEKGFPPCP+AYCSLI++LGKAKRYEAANELFQELKENCGSSS RVYAVM
Sbjct: 424  EKALLLLEEMDEKGFPPCPAAYCSLINSLGKAKRYEAANELFQELKENCGSSSVRVYAVM 483

Query: 411  IKHFGKCGRLGDAIDLFNEMRKLGCSPDVYAYNSLMSGMVRGGMIDEAHSLLQTMEEEGS 232
            IKHFGKCGR  +A+ LFNEM+KLGC PDVYAYN+L++GMVR  M+DEA SL +TMEE G 
Sbjct: 484  IKHFGKCGRFNEAMGLFNEMKKLGCIPDVYAYNALITGMVRADMMDEAFSLFRTMEENGC 543

Query: 231  VPDINSHNIILYGLARSGSPNRAMEMFMKMKNANIKPDSVSYNTVLGCLSHAGMFEEAVR 52
             PDINSHNIIL GLAR+G P RAMEMF KMK++ IKPD+VSYNTVLGCLS AG+FEEA +
Sbjct: 544  NPDINSHNIILNGLARTGGPKRAMEMFAKMKSSTIKPDAVSYNTVLGCLSRAGLFEEATK 603

Query: 51   LMKEMSSNGFDYDLITY 1
            LMKEM+S GF+YDLITY
Sbjct: 604  LMKEMNSKGFEYDLITY 620



 Score =  104 bits (259), Expect = 1e-19
 Identities = 64/211 (30%), Positives = 109/211 (51%), Gaps = 1/211 (0%)
 Frame = -3

Query: 1347 KAKMVNKALSIFYQIKARKCRPTSMAYNSMILMLMQEGHHNKIHELYIEMCNEGNCLPDT 1168
            K   V KAL +  ++  +   P   AY S+I  L +   +   +EL+ E+  + NC   +
Sbjct: 419  KTNRVEKALLLLEEMDEKGFPPCPAAYCSLINSLGKAKRYEAANELFQEL--KENCGSSS 476

Query: 1167 V-TYSALISTFGKLGREDSAVRLFDEMKENGLQPTAKIYTTLISIYFKMGKDEKALGLFR 991
            V  Y+ +I  FGK GR + A+ LF+EMK+ G  P    Y  LI+   +    ++A  LFR
Sbjct: 477  VRVYAVMIKHFGKCGRFNEAMGLFNEMKKLGCIPDVYAYNALITGMVRADMMDEAFSLFR 536

Query: 990  EMKEKHCTRTVFTYTELIRGLGTAGRIEEAYGMFLSMREDGCRPDVVLMNNVINVFGRAG 811
             M+E  C   + ++  ++ GL   G  + A  MF  M+    +PD V  N V+    RAG
Sbjct: 537  TMEENGCNPDINSHNIILNGLARTGGPKRAMEMFAKMKSSTIKPDAVSYNTVLGCLSRAG 596

Query: 810  RLGDAMKVFEDMRSFQCSPNVVTYNTMIKAL 718
               +A K+ ++M S     +++TY+++++A+
Sbjct: 597  LFEEATKLMKEMNSKGFEYDLITYSSILEAV 627



 Score = 60.1 bits (144), Expect = 2e-06
 Identities = 33/155 (21%), Positives = 71/155 (45%)
 Frame = -3

Query: 1479 YMALVHSLDECGRVGELWKTVQDMVRSSCIIGPAELCEIVRILGKAKMVNKALSIFYQIK 1300
            Y  ++    +CGR  E      +M +  CI        ++  + +A M+++A S+F  ++
Sbjct: 480  YAVMIKHFGKCGRFNEAMGLFNEMKKLGCIPDVYAYNALITGMVRADMMDEAFSLFRTME 539

Query: 1299 ARKCRPTSMAYNSMILMLMQEGHHNKIHELYIEMCNEGNCLPDTVTYSALISTFGKLGRE 1120
               C P   ++N ++  L + G   +  E++ +M       PD V+Y+ ++    + G  
Sbjct: 540  ENGCNPDINSHNIILNGLARTGGPKRAMEMFAKM-KSSTIKPDAVSYNTVLGCLSRAGLF 598

Query: 1119 DSAVRLFDEMKENGLQPTAKIYTTLISIYFKMGKD 1015
            + A +L  EM   G +     Y++++    K+ +D
Sbjct: 599  EEATKLMKEMNSKGFEYDLITYSSILEAVGKVDED 633


>ref|XP_002299640.1| predicted protein [Populus trichocarpa] gi|222846898|gb|EEE84445.1|
            predicted protein [Populus trichocarpa]
          Length = 609

 Score =  905 bits (2338), Expect = 0.0
 Identities = 434/591 (73%), Positives = 515/591 (87%), Gaps = 2/591 (0%)
 Frame = -3

Query: 1767 MFQLPTPMNDPQQHNPKHSRTNNNRGP-VRLLDERFIRILKIFKWGPDSEKALEVLMLKL 1591
            MF++P+  +D  Q+ P  +   + R P VR LDERFIRILKIFKWGPD+EKALEVL LK+
Sbjct: 1    MFKVPSSKDDEMQNLPTQNSKFSRRDPSVRTLDERFIRILKIFKWGPDAEKALEVLKLKV 60

Query: 1590 DHRLVREVMKINVEITVKLHFFKWAGKRKNFEHDSSTYMALVHSLDECGRVGELWKTVQD 1411
            DHRLVREV+KI+VEI VK+ FFKWAGKR+NFEHD +TYM L+  LD+CG  GE+WK +Q+
Sbjct: 61   DHRLVREVLKIDVEINVKIQFFKWAGKRRNFEHDLTTYMPLIRCLDDCGLFGEMWKMIQE 120

Query: 1410 MVRS-SCIIGPAELCEIVRILGKAKMVNKALSIFYQIKARKCRPTSMAYNSMILMLMQEG 1234
            MVRS +C+IGPA+L E+V+ILGKAKMVNKALS+FYQIK+RKC+PT+  YNSMILMLMQEG
Sbjct: 121  MVRSPTCVIGPADLSEVVKILGKAKMVNKALSVFYQIKSRKCKPTASTYNSMILMLMQEG 180

Query: 1233 HHNKIHELYIEMCNEGNCLPDTVTYSALISTFGKLGREDSAVRLFDEMKENGLQPTAKIY 1054
            HH KIHELY EMCNEG+C PDT+TYS L+S F KLGR+D A+RLFDEMK NGL PTAKIY
Sbjct: 181  HHEKIHELYHEMCNEGDCFPDTMTYSVLVSAFVKLGRDDYAIRLFDEMKANGLHPTAKIY 240

Query: 1053 TTLISIYFKMGKDEKALGLFREMKEKHCTRTVFTYTELIRGLGTAGRIEEAYGMFLSMRE 874
            TTL++IYFK G DEKALGL +EMK+K C  TVFTYTELI+GLG +GR+E+AY +FL+M +
Sbjct: 241  TTLLAIYFKSG-DEKALGLVQEMKDKGCAPTVFTYTELIKGLGKSGRVEDAYSVFLNMLK 299

Query: 873  DGCRPDVVLMNNVINVFGRAGRLGDAMKVFEDMRSFQCSPNVVTYNTMIKALFESKAPVS 694
            DGC+PDVVL+NN+IN+FG+AGRL DA+K+F+ MRS +C+PNVVTYNT+IKALFESKAP S
Sbjct: 300  DGCKPDVVLINNLINIFGKAGRLEDALKLFDQMRSLKCAPNVVTYNTVIKALFESKAPAS 359

Query: 693  EVASWLEKMKENGITPSDFTYSILIDGFCKTNRVEKALLLLEEMDEKGFPPCPSAYCSLI 514
            E ASW EKMK NG+TPS FTYSILIDGFCKTNRVEKALLLLEEMDEKGFPPCP+AYCSLI
Sbjct: 360  EAASWFEKMKANGVTPSSFTYSILIDGFCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLI 419

Query: 513  DALGKAKRYEAANELFQELKENCGSSSSRVYAVMIKHFGKCGRLGDAIDLFNEMRKLGCS 334
            +ALGKAKRYEAANELF ELKENCG SS+R+YAVMIK+ GKCGR  +A+DLFNEM+K+GC+
Sbjct: 420  NALGKAKRYEAANELFLELKENCGRSSARIYAVMIKNLGKCGRPSEAVDLFNEMKKIGCN 479

Query: 333  PDVYAYNSLMSGMVRGGMIDEAHSLLQTMEEEGSVPDINSHNIILYGLARSGSPNRAMEM 154
            PDVYAYN+LMSG+VR GMI+EA S L+TMEE G  PD+NSHNIIL GLAR+G P +A EM
Sbjct: 480  PDVYAYNALMSGLVRAGMIEEAFSALRTMEENGCTPDLNSHNIILNGLARTGRPEQATEM 539

Query: 153  FMKMKNANIKPDSVSYNTVLGCLSHAGMFEEAVRLMKEMSSNGFDYDLITY 1
            FMKMK++ IKPD+VSYNT+LG LS +GMFEEA +LM+EM S GF+YD ITY
Sbjct: 540  FMKMKDSLIKPDAVSYNTILGSLSRSGMFEEAAKLMREMGSRGFEYDHITY 590



 Score =  163 bits (413), Expect = 1e-37
 Identities = 97/336 (28%), Positives = 161/336 (47%)
 Frame = -3

Query: 1482 TYMALVHSLDECGRVGELWKTVQDMVRSSCIIGPAELCEIVRILGKAKMVNKALSIFYQI 1303
            TY  L+  L + GRV + +    +M++  C      +  ++ I GKA  +  AL +F Q+
Sbjct: 273  TYTELIKGLGKSGRVEDAYSVFLNMLKDGCKPDVVLINNLINIFGKAGRLEDALKLFDQM 332

Query: 1302 KARKCRPTSMAYNSMILMLMQEGHHNKIHELYIEMCNEGNCLPDTVTYSALISTFGKLGR 1123
            ++ KC P  + YN++I  L +          + E        P + TYS LI  F K  R
Sbjct: 333  RSLKCAPNVVTYNTVIKALFESKAPASEAASWFEKMKANGVTPSSFTYSILIDGFCKTNR 392

Query: 1122 EDSAVRLFDEMKENGLQPTAKIYTTLISIYFKMGKDEKALGLFREMKEKHCTRTVFTYTE 943
             + A+ L +EM E G  P    Y +LI+   K  + E A  LF E+KE     +   Y  
Sbjct: 393  VEKALLLLEEMDEKGFPPCPAAYCSLINALGKAKRYEAANELFLELKENCGRSSARIYAV 452

Query: 942  LIRGLGTAGRIEEAYGMFLSMREDGCRPDVVLMNNVINVFGRAGRLGDAMKVFEDMRSFQ 763
            +I+ LG  GR  EA  +F  M++ GC PDV   N +++   RAG + +A      M    
Sbjct: 453  MIKNLGKCGRPSEAVDLFNEMKKIGCNPDVYAYNALMSGLVRAGMIEEAFSALRTMEENG 512

Query: 762  CSPNVVTYNTMIKALFESKAPVSEVASWLEKMKENGITPSDFTYSILIDGFCKTNRVEKA 583
            C+P++ ++N ++  L  +  P  +      KMK++ I P   +Y+ ++    ++   E+A
Sbjct: 513  CTPDLNSHNIILNGLARTGRP-EQATEMFMKMKDSLIKPDAVSYNTILGSLSRSGMFEEA 571

Query: 582  LLLLEEMDEKGFPPCPSAYCSLIDALGKAKRYEAAN 475
              L+ EM  +GF      Y S+++A+GK    +  N
Sbjct: 572  AKLMREMGSRGFEYDHITYSSILEAVGKVDEDDEPN 607



 Score =  157 bits (396), Expect = 1e-35
 Identities = 110/408 (26%), Positives = 191/408 (46%), Gaps = 1/408 (0%)
 Frame = -3

Query: 1491 DSSTYMALVHSLDECGRVGELWKTVQDMVRSSCIIGPAELCEIVRILGKAKMVNKALSIF 1312
            D+ TY  LV +  + GR     +   +M +++ +   A++   +  +       KAL + 
Sbjct: 201  DTMTYSVLVSAFVKLGRDDYAIRLFDEM-KANGLHPTAKIYTTLLAIYFKSGDEKALGLV 259

Query: 1311 YQIKARKCRPTSMAYNSMILMLMQEGHHNKIHELYIEMCNEGNCLPDTVTYSALISTFGK 1132
             ++K + C PT   Y  +I  L + G     + +++ M  +G C PD V  + LI+ FGK
Sbjct: 260  QEMKDKGCAPTVFTYTELIKGLGKSGRVEDAYSVFLNMLKDG-CKPDVVLINNLINIFGK 318

Query: 1131 LGREDSAVRLFDEMKENGLQPTAKIYTTLISIYFKM-GKDEKALGLFREMKEKHCTRTVF 955
             GR + A++LFD+M+     P    Y T+I   F+      +A   F +MK    T + F
Sbjct: 319  AGRLEDALKLFDQMRSLKCAPNVVTYNTVIKALFESKAPASEAASWFEKMKANGVTPSSF 378

Query: 954  TYTELIRGLGTAGRIEEAYGMFLSMREDGCRPDVVLMNNVINVFGRAGRLGDAMKVFEDM 775
            TY+ LI G     R+E+A  +   M E G  P      ++IN  G+A R   A ++F ++
Sbjct: 379  TYSILIDGFCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLINALGKAKRYEAANELFLEL 438

Query: 774  RSFQCSPNVVTYNTMIKALFESKAPVSEVASWLEKMKENGITPSDFTYSILIDGFCKTNR 595
            +      +   Y  MIK L +   P SE      +MK+ G  P  + Y+ L+ G  +   
Sbjct: 439  KENCGRSSARIYAVMIKNLGKCGRP-SEAVDLFNEMKKIGCNPDVYAYNALMSGLVRAGM 497

Query: 594  VEKALLLLEEMDEKGFPPCPSAYCSLIDALGKAKRYEAANELFQELKENCGSSSSRVYAV 415
            +E+A   L  M+E G  P  +++  +++ L +  R E A E+F ++K++     +  Y  
Sbjct: 498  IEEAFSALRTMEENGCTPDLNSHNIILNGLARTGRPEQATEMFMKMKDSLIKPDAVSYNT 557

Query: 414  MIKHFGKCGRLGDAIDLFNEMRKLGCSPDVYAYNSLMSGMVRGGMIDE 271
            ++    + G   +A  L  EM   G   D   Y+S++  +   G +DE
Sbjct: 558  ILGSLSRSGMFEEAAKLMREMGSRGFEYDHITYSSILEAV---GKVDE 602



 Score = 73.9 bits (180), Expect = 1e-10
 Identities = 52/207 (25%), Positives = 102/207 (49%), Gaps = 6/207 (2%)
 Frame = -3

Query: 1506 KNFEHDSSTYMALVHSLDECGR---VGELWKTVQDMV-RSSCIIGPAELCEIVRILGKAK 1339
            K F    + Y +L+++L +  R     EL+  +++   RSS  I       +++ LGK  
Sbjct: 406  KGFPPCPAAYCSLINALGKAKRYEAANELFLELKENCGRSSARI----YAVMIKNLGKCG 461

Query: 1338 MVNKALSIFYQIKARKCRPTSMAYNSMILMLMQEGHHNKIHELY--IEMCNEGNCLPDTV 1165
              ++A+ +F ++K   C P   AYN+++  L++ G    I E +  +    E  C PD  
Sbjct: 462  RPSEAVDLFNEMKKIGCNPDVYAYNALMSGLVRAG---MIEEAFSALRTMEENGCTPDLN 518

Query: 1164 TYSALISTFGKLGREDSAVRLFDEMKENGLQPTAKIYTTLISIYFKMGKDEKALGLFREM 985
            +++ +++   + GR + A  +F +MK++ ++P A  Y T++    + G  E+A  L REM
Sbjct: 519  SHNIILNGLARTGRPEQATEMFMKMKDSLIKPDAVSYNTILGSLSRSGMFEEAAKLMREM 578

Query: 984  KEKHCTRTVFTYTELIRGLGTAGRIEE 904
              +       TY+ ++  +G     +E
Sbjct: 579  GSRGFEYDHITYSSILEAVGKVDEDDE 605