BLASTX nr result
ID: Coptis25_contig00006140
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis25_contig00006140
(2646 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002516670.1| ATP-dependent clp protease ATP-binding subun... 712 0.0
ref|XP_003634146.1| PREDICTED: ATP-dependent Clp protease ATP-bi... 702 0.0
ref|XP_002272792.1| PREDICTED: ATP-dependent Clp protease ATP-bi... 697 0.0
emb|CBI23009.3| unnamed protein product [Vitis vinifera] 694 0.0
ref|XP_002864237.1| hypothetical protein ARALYDRAFT_918413 [Arab... 685 0.0
>ref|XP_002516670.1| ATP-dependent clp protease ATP-binding subunit clpx, putative
[Ricinus communis] gi|223544165|gb|EEF45689.1|
ATP-dependent clp protease ATP-binding subunit clpx,
putative [Ricinus communis]
Length = 565
Score = 712 bits (1837), Expect = 0.0
Identities = 388/573 (67%), Positives = 438/573 (76%), Gaps = 20/573 (3%)
Frame = -1
Query: 2442 SKSVKHIASQSSKYFVFNHYMHIG-RIINTTTHYNNQRTPTKCIGDFSIKRPYLFYPFKM 2266
+K K A +YF+FN YMH G I++T+T Y R D PY F FK
Sbjct: 7 AKPSKETAFYQFRYFIFN-YMHAGGAIMSTSTSYCTHRNKWD---DHFSNTPYHFTSFKP 62
Query: 2265 VSFKGDY--------------DDKCRVXXXXXXXXGEPPEFWQPPGGDGVIMAAPDXXXX 2128
VS +G++ +K + G+PPE WQPPG DG+
Sbjct: 63 VSLRGEFIEKGNQLLDNKRNWSEKLKNSSGGGSNYGDPPEVWQPPG-DGIATVRVSEVRG 121
Query: 2127 XXXXXXXXXXXXXXXXXXSKDGCWGGANMGNDFPTPKEICQGLDKFVIGQERAKKVLSVA 1948
KDGCWGG+++GN+FPTPKEIC+GLDKFVIGQ+RAKKVLSVA
Sbjct: 122 GEGRGGPGSNS--------KDGCWGGSDLGNNFPTPKEICRGLDKFVIGQDRAKKVLSVA 173
Query: 1947 VYNHYKRIYFESQPKCAEGSTNGE-----DNDSVELEKSNVLLMGPTGSGKTLLAKTLAR 1783
VYNHYKRIY +S K + G + D D VELEKSN+LLMGPTGSGKTLLAKTLAR
Sbjct: 174 VYNHYKRIYHDSIQKWSAGDSGNNKAEAMDEDGVELEKSNILLMGPTGSGKTLLAKTLAR 233
Query: 1782 FVNVPFVIADATTLTQAGYVGEDVESILYKLLMVADYNVEAAQQGIVYIDEVDKITKKAE 1603
FVNVPFVIADATTLTQAGYVGEDVESILYKLLM ADYNV AAQQGIVYIDEVDKITKKAE
Sbjct: 234 FVNVPFVIADATTLTQAGYVGEDVESILYKLLMAADYNVAAAQQGIVYIDEVDKITKKAE 293
Query: 1602 SLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFIDL 1423
S+NISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFIDL
Sbjct: 294 SVNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFIDL 353
Query: 1422 EKTISERRQDSSIGFGAPVRANMRTGGLTNAAITSSLLETVESSDLIAYGLIPEFVGRFP 1243
EKTISERRQDSSIGFGAPVRANMR G +T+AA+TSSLLETVES DLI+YGLIPEFVGRFP
Sbjct: 354 EKTISERRQDSSIGFGAPVRANMRMGSVTSAAVTSSLLETVESGDLISYGLIPEFVGRFP 413
Query: 1242 VLVSLSALSEDQLVQVLIEPKNALGKQYRKMFQMNDVKLHFTEVALRLIARKAMARSTGA 1063
VLVSLSAL+E+QLVQVL EPKNALGKQY+KMFQMN V+LHFTE ALRLIA+KA+ ++TGA
Sbjct: 414 VLVSLSALTENQLVQVLTEPKNALGKQYKKMFQMNGVRLHFTENALRLIAKKAITKNTGA 473
Query: 1062 RGLRSLLENILMDAMYEIPDLETGKDKIDAVVVDEEAVGSMERSGCGAKILYGDGAFELY 883
RGLR++LENILMDAMYEIPD++TG+D IDAVVVDEEAVG+ E G G +ILYG GA + Y
Sbjct: 474 RGLRAILENILMDAMYEIPDVKTGEDIIDAVVVDEEAVGT-EGCGTGGRILYGKGALDRY 532
Query: 882 LSQQKSKEFETREEGSERMPDAEPELPSIVVSM 784
L++ K K+ E +GS+ P+ E EL SIV SM
Sbjct: 533 LAENKLKDSERTVDGSDGDPEVETELSSIVASM 565
>ref|XP_003634146.1| PREDICTED: ATP-dependent Clp protease ATP-binding subunit ClpX-like
isoform 2 [Vitis vinifera]
Length = 577
Score = 702 bits (1811), Expect = 0.0
Identities = 390/567 (68%), Positives = 435/567 (76%), Gaps = 26/567 (4%)
Frame = -1
Query: 2406 KYFVFNHYMHIGRIINTTTHYNNQRTPTKCIGDFSIKR-PYLFYPFKMVSFKGDYDDK-- 2236
+YF+ NH MH GR+ N+ + C F+ PY F FK VS +G+ DK
Sbjct: 22 RYFILNH-MHAGRLPNSYISHK-----PNCDHCFTHSHTPYHFTSFKPVSLRGELVDKGL 75
Query: 2235 --------CRVXXXXXXXXG-----------EPPEFWQPPGGDGVIM---AAPDXXXXXX 2122
+V +PPE W GDG+++ +
Sbjct: 76 EFFDNQRFSKVGFSTNESKKLSRDTILNSFGDPPEVWS---GDGIVVRQGGSGSNLVRGG 132
Query: 2121 XXXXXXXXXXXXXXXXSKDGCWGGANMGNDFPTPKEICQGLDKFVIGQERAKKVLSVAVY 1942
SKD WGG+N+G++FPTPKEIC+GLDKFVIGQERAKKVLSVAVY
Sbjct: 133 GGAGANGGAGSGFGSNSKDESWGGSNLGHNFPTPKEICRGLDKFVIGQERAKKVLSVAVY 192
Query: 1941 NHYKRIYFESQPKCAEGSTNGEDNDSVELEKSNVLLMGPTGSGKTLLAKTLARFVNVPFV 1762
NHYKRIY +S KC + DNDSVELEKSN+LLMGPTGSGKTLLAKTLARFVNVPFV
Sbjct: 193 NHYKRIYHQSLQKC-DDKAEATDNDSVELEKSNILLMGPTGSGKTLLAKTLARFVNVPFV 251
Query: 1761 IADATTLTQAGYVGEDVESILYKLLMVADYNVEAAQQGIVYIDEVDKITKKAESLNISRD 1582
IADATTLTQAGYVGEDVESILYKLLMVADYNV AAQQGIVYIDEVDKITKKAESLN+SRD
Sbjct: 252 IADATTLTQAGYVGEDVESILYKLLMVADYNVAAAQQGIVYIDEVDKITKKAESLNLSRD 311
Query: 1581 VSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFIDLEKTISER 1402
VSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFIDLEKTISER
Sbjct: 312 VSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFIDLEKTISER 371
Query: 1401 RQDSSIGFGAPVRANMRTGGLTNAAITSSLLETVESSDLIAYGLIPEFVGRFPVLVSLSA 1222
RQDSSIGFGAPVRANMRTGG T+AA+ SSLLETVESSDLI+YGLIPEFVGRFP+LVSLSA
Sbjct: 372 RQDSSIGFGAPVRANMRTGGPTDAAVASSLLETVESSDLISYGLIPEFVGRFPILVSLSA 431
Query: 1221 LSEDQLVQVLIEPKNALGKQYRKMFQMNDVKLHFTEVALRLIARKAMARSTGARGLRSLL 1042
L+E+QLV+VL EPKNALGKQY+KMFQMN VKLHFT+ ALRLI+RKAM+++TGARGLRS+L
Sbjct: 432 LTENQLVEVLTEPKNALGKQYKKMFQMNGVKLHFTKNALRLISRKAMSKNTGARGLRSIL 491
Query: 1041 ENILMDAMYEIPDLETGKDKIDAVVVDEEAVGSMERSGCGAKILYGDGAFELYLSQQKSK 862
ENILM+AMYEIPD+ TG D IDAVVVD+EAVGS + G GAKILYG GA + YLSQ K K
Sbjct: 492 ENILMNAMYEIPDVRTGNDIIDAVVVDDEAVGS-DGHGFGAKILYGKGALDCYLSQHKLK 550
Query: 861 EFETREEG-SERMPDAEPELPSIVVSM 784
E ET EG S+ +AE E+PSIV SM
Sbjct: 551 ETETPMEGSSDGEAEAEAEIPSIVASM 577
>ref|XP_002272792.1| PREDICTED: ATP-dependent Clp protease ATP-binding subunit ClpX-like
isoform 1 [Vitis vinifera]
Length = 583
Score = 697 bits (1799), Expect = 0.0
Identities = 390/572 (68%), Positives = 436/572 (76%), Gaps = 31/572 (5%)
Frame = -1
Query: 2406 KYFVFNHYMHIGRIINTTTHYNNQRTPTKCIGDFSIKR-PYLFYPFKMVSFKGDYDDK-- 2236
+YF+ NH MH GR+ N+ + C F+ PY F FK VS +G+ DK
Sbjct: 22 RYFILNH-MHAGRLPNSYISHK-----PNCDHCFTHSHTPYHFTSFKPVSLRGELVDKGL 75
Query: 2235 --------CRVXXXXXXXXG-----------EPPEFWQPPGGDGVIM---AAPDXXXXXX 2122
+V +PPE W GDG+++ +
Sbjct: 76 EFFDNQRFSKVGFSTNESKKLSRDTILNSFGDPPEVWS---GDGIVVRQGGSGSNLVRGG 132
Query: 2121 XXXXXXXXXXXXXXXXSKDGCWGGANMGNDFPTPKEICQGLDKFVIGQERAKKVLSVAVY 1942
SKD WGG+N+G++FPTPKEIC+GLDKFVIGQERAKKVLSVAVY
Sbjct: 133 GGAGANGGAGSGFGSNSKDESWGGSNLGHNFPTPKEICRGLDKFVIGQERAKKVLSVAVY 192
Query: 1941 NHYKRIYFESQPKCAEGSTNGE-----DNDSVELEKSNVLLMGPTGSGKTLLAKTLARFV 1777
NHYKRIY +S K T+ + DNDSVELEKSN+LLMGPTGSGKTLLAKTLARFV
Sbjct: 193 NHYKRIYHQSLQKWPAEDTSDDKAEATDNDSVELEKSNILLMGPTGSGKTLLAKTLARFV 252
Query: 1776 NVPFVIADATTLTQAGYVGEDVESILYKLLMVADYNVEAAQQGIVYIDEVDKITKKAESL 1597
NVPFVIADATTLTQAGYVGEDVESILYKLLMVADYNV AAQQGIVYIDEVDKITKKAESL
Sbjct: 253 NVPFVIADATTLTQAGYVGEDVESILYKLLMVADYNVAAAQQGIVYIDEVDKITKKAESL 312
Query: 1596 NISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFIDLEK 1417
N+SRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFIDLEK
Sbjct: 313 NLSRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFIDLEK 372
Query: 1416 TISERRQDSSIGFGAPVRANMRTGGLTNAAITSSLLETVESSDLIAYGLIPEFVGRFPVL 1237
TISERRQDSSIGFGAPVRANMRTGG T+AA+ SSLLETVESSDLI+YGLIPEFVGRFP+L
Sbjct: 373 TISERRQDSSIGFGAPVRANMRTGGPTDAAVASSLLETVESSDLISYGLIPEFVGRFPIL 432
Query: 1236 VSLSALSEDQLVQVLIEPKNALGKQYRKMFQMNDVKLHFTEVALRLIARKAMARSTGARG 1057
VSLSAL+E+QLV+VL EPKNALGKQY+KMFQMN VKLHFT+ ALRLI+RKAM+++TGARG
Sbjct: 433 VSLSALTENQLVEVLTEPKNALGKQYKKMFQMNGVKLHFTKNALRLISRKAMSKNTGARG 492
Query: 1056 LRSLLENILMDAMYEIPDLETGKDKIDAVVVDEEAVGSMERSGCGAKILYGDGAFELYLS 877
LRS+LENILM+AMYEIPD+ TG D IDAVVVD+EAVGS + G GAKILYG GA + YLS
Sbjct: 493 LRSILENILMNAMYEIPDVRTGNDIIDAVVVDDEAVGS-DGHGFGAKILYGKGALDCYLS 551
Query: 876 QQKSKEFETREEG-SERMPDAEPELPSIVVSM 784
Q K KE ET EG S+ +AE E+PSIV SM
Sbjct: 552 QHKLKETETPMEGSSDGEAEAEAEIPSIVASM 583
>emb|CBI23009.3| unnamed protein product [Vitis vinifera]
Length = 583
Score = 694 bits (1791), Expect = 0.0
Identities = 389/572 (68%), Positives = 435/572 (76%), Gaps = 31/572 (5%)
Frame = -1
Query: 2406 KYFVFNHYMHIGRIINTTTHYNNQRTPTKCIGDFSIKR-PYLFYPFKMVSFKGDYDDK-- 2236
+YF+ NH MH GR+ N+ + C F+ PY F FK VS +G+ DK
Sbjct: 22 RYFILNH-MHAGRLPNSYISHK-----PNCDHCFTHSHTPYHFTSFKPVSLRGELVDKGL 75
Query: 2235 --------CRVXXXXXXXXG-----------EPPEFWQPPGGDGVIM---AAPDXXXXXX 2122
+V +PPE W GDG+++ +
Sbjct: 76 EFFDNQRFSKVGFSTNESKKLSRDTILNSFGDPPEVWS---GDGIVVRQGGSGSNLVRGG 132
Query: 2121 XXXXXXXXXXXXXXXXSKDGCWGGANMGNDFPTPKEICQGLDKFVIGQERAKKVLSVAVY 1942
SKD WGG+N+G++FPTPKEIC+GLDKFVIGQERAKKVLSVAVY
Sbjct: 133 GGAGANGGAGSGFGSNSKDESWGGSNLGHNFPTPKEICRGLDKFVIGQERAKKVLSVAVY 192
Query: 1941 NHYKRIYFESQPKCAEGSTNGE-----DNDSVELEKSNVLLMGPTGSGKTLLAKTLARFV 1777
NHYKRIY +S K T+ + DNDSVELEKSN+LLMGPTGSGKTLLAKTLARFV
Sbjct: 193 NHYKRIYHQSLQKWPAEDTSDDKAEATDNDSVELEKSNILLMGPTGSGKTLLAKTLARFV 252
Query: 1776 NVPFVIADATTLTQAGYVGEDVESILYKLLMVADYNVEAAQQGIVYIDEVDKITKKAESL 1597
NVPFVIADATTLTQA YVGEDVESILYKLLMVADYNV AAQQGIVYIDEVDKITKKAESL
Sbjct: 253 NVPFVIADATTLTQARYVGEDVESILYKLLMVADYNVAAAQQGIVYIDEVDKITKKAESL 312
Query: 1596 NISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFIDLEK 1417
N+SRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFIDLEK
Sbjct: 313 NLSRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFIDLEK 372
Query: 1416 TISERRQDSSIGFGAPVRANMRTGGLTNAAITSSLLETVESSDLIAYGLIPEFVGRFPVL 1237
TISERRQDSSIGFGAPVRANMRTGG T+AA+ SSLLETVESSDLI+YGLIPEFVGRFP+L
Sbjct: 373 TISERRQDSSIGFGAPVRANMRTGGPTDAAVASSLLETVESSDLISYGLIPEFVGRFPIL 432
Query: 1236 VSLSALSEDQLVQVLIEPKNALGKQYRKMFQMNDVKLHFTEVALRLIARKAMARSTGARG 1057
VSLSAL+E+QLV+VL EPKNALGKQY+KMFQMN VKLHFT+ ALRLI+RKAM+++TGARG
Sbjct: 433 VSLSALTENQLVEVLTEPKNALGKQYKKMFQMNGVKLHFTKNALRLISRKAMSKNTGARG 492
Query: 1056 LRSLLENILMDAMYEIPDLETGKDKIDAVVVDEEAVGSMERSGCGAKILYGDGAFELYLS 877
LRS+LENILM+AMYEIPD+ TG D IDAVVVD+EAVGS + G GAKILYG GA + YLS
Sbjct: 493 LRSILENILMNAMYEIPDVRTGNDIIDAVVVDDEAVGS-DGHGFGAKILYGKGALDCYLS 551
Query: 876 QQKSKEFETREEG-SERMPDAEPELPSIVVSM 784
Q K KE ET EG S+ +AE E+PSIV SM
Sbjct: 552 QHKLKETETPMEGSSDGEAEAEAEIPSIVASM 583
>ref|XP_002864237.1| hypothetical protein ARALYDRAFT_918413 [Arabidopsis lyrata subsp.
lyrata] gi|297310072|gb|EFH40496.1| hypothetical protein
ARALYDRAFT_918413 [Arabidopsis lyrata subsp. lyrata]
Length = 572
Score = 685 bits (1767), Expect = 0.0
Identities = 360/482 (74%), Positives = 403/482 (83%), Gaps = 10/482 (2%)
Frame = -1
Query: 2199 EPPEFWQPPGGDGVIM----AAPDXXXXXXXXXXXXXXXXXXXXXXSKDGCWGGANMGND 2032
+PP+ WQPPG DGV + ++ + SK+ CWGG+N+G+D
Sbjct: 92 DPPDLWQPPG-DGVSVRVNGSSVNLGRGGGGGGSSPGGPGNGTGSNSKEDCWGGSNLGSD 150
Query: 2031 FPTPKEICQGLDKFVIGQERAKKVLSVAVYNHYKRIYFESQPKCAEGSTNGE-----DND 1867
FPTPKEIC+GL+KFVIGQERAKKVLSVAVYNHYKRIY ES K + G T+ D+D
Sbjct: 151 FPTPKEICKGLNKFVIGQERAKKVLSVAVYNHYKRIYHESSQKRSAGETDSTAVKPADDD 210
Query: 1866 SVELEKSNVLLMGPTGSGKTLLAKTLARFVNVPFVIADATTLTQAGYVGEDVESILYKLL 1687
VELEKSN+LLMGPTGSGKTLLAKTLARFVNVPFVIADATTLTQAGYVGEDVESILYKLL
Sbjct: 211 MVELEKSNILLMGPTGSGKTLLAKTLARFVNVPFVIADATTLTQAGYVGEDVESILYKLL 270
Query: 1686 MVADYNVEAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKG 1507
VADYNV AAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGT+VNVPEKG
Sbjct: 271 TVADYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTIVNVPEKG 330
Query: 1506 ARKHPRGDNIQIDTKDILFICGGAFIDLEKTISERRQDSSIGFGAPVRANMRTGGLTNAA 1327
ARKHPRGDNIQIDTKDILFICGGAF+D+EKTISERR DSSIGFGAPVRANMR GG+TNAA
Sbjct: 331 ARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRHDSSIGFGAPVRANMRAGGVTNAA 390
Query: 1326 ITSSLLETVESSDLIAYGLIPEFVGRFPVLVSLSALSEDQLVQVLIEPKNALGKQYRKMF 1147
+ S+L+ETVESSDLIAYGLIPEFVGRFPVLVSLSAL+E+QL+QVL EPKNALGKQY+KM+
Sbjct: 391 VASNLMETVESSDLIAYGLIPEFVGRFPVLVSLSALTENQLMQVLTEPKNALGKQYKKMY 450
Query: 1146 QMNDVKLHFTEVALRLIARKAMARSTGARGLRSLLENILMDAMYEIPDLETGKDKIDAVV 967
QMN VKLHFTE ALRLIARKA+ ++TGARGLRSLLE+ILMD+MYEIPD TG D I+AVV
Sbjct: 451 QMNSVKLHFTESALRLIARKAITKNTGARGLRSLLESILMDSMYEIPDESTGSDMIEAVV 510
Query: 966 VDEEAVGSMERSGCGAKILYGDGAFELYLSQQKSKEF-ETREEGSERMPDAEPELPSIVV 790
VDEEAV R G GAKIL G GA YLS+ KSK+ +T ++GS+ + E E+PS+V
Sbjct: 511 VDEEAVEGEGRRGSGAKILRGKGALGRYLSETKSKDSPQTTKDGSDGETEVEAEIPSVVA 570
Query: 789 SM 784
SM
Sbjct: 571 SM 572