BLASTX nr result

ID: Coptis25_contig00006140 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00006140
         (2646 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002516670.1| ATP-dependent clp protease ATP-binding subun...   712   0.0  
ref|XP_003634146.1| PREDICTED: ATP-dependent Clp protease ATP-bi...   702   0.0  
ref|XP_002272792.1| PREDICTED: ATP-dependent Clp protease ATP-bi...   697   0.0  
emb|CBI23009.3| unnamed protein product [Vitis vinifera]              694   0.0  
ref|XP_002864237.1| hypothetical protein ARALYDRAFT_918413 [Arab...   685   0.0  

>ref|XP_002516670.1| ATP-dependent clp protease ATP-binding subunit clpx, putative
            [Ricinus communis] gi|223544165|gb|EEF45689.1|
            ATP-dependent clp protease ATP-binding subunit clpx,
            putative [Ricinus communis]
          Length = 565

 Score =  712 bits (1837), Expect = 0.0
 Identities = 388/573 (67%), Positives = 438/573 (76%), Gaps = 20/573 (3%)
 Frame = -1

Query: 2442 SKSVKHIASQSSKYFVFNHYMHIG-RIINTTTHYNNQRTPTKCIGDFSIKRPYLFYPFKM 2266
            +K  K  A    +YF+FN YMH G  I++T+T Y   R       D     PY F  FK 
Sbjct: 7    AKPSKETAFYQFRYFIFN-YMHAGGAIMSTSTSYCTHRNKWD---DHFSNTPYHFTSFKP 62

Query: 2265 VSFKGDY--------------DDKCRVXXXXXXXXGEPPEFWQPPGGDGVIMAAPDXXXX 2128
            VS +G++               +K +         G+PPE WQPPG DG+          
Sbjct: 63   VSLRGEFIEKGNQLLDNKRNWSEKLKNSSGGGSNYGDPPEVWQPPG-DGIATVRVSEVRG 121

Query: 2127 XXXXXXXXXXXXXXXXXXSKDGCWGGANMGNDFPTPKEICQGLDKFVIGQERAKKVLSVA 1948
                               KDGCWGG+++GN+FPTPKEIC+GLDKFVIGQ+RAKKVLSVA
Sbjct: 122  GEGRGGPGSNS--------KDGCWGGSDLGNNFPTPKEICRGLDKFVIGQDRAKKVLSVA 173

Query: 1947 VYNHYKRIYFESQPKCAEGSTNGE-----DNDSVELEKSNVLLMGPTGSGKTLLAKTLAR 1783
            VYNHYKRIY +S  K + G +        D D VELEKSN+LLMGPTGSGKTLLAKTLAR
Sbjct: 174  VYNHYKRIYHDSIQKWSAGDSGNNKAEAMDEDGVELEKSNILLMGPTGSGKTLLAKTLAR 233

Query: 1782 FVNVPFVIADATTLTQAGYVGEDVESILYKLLMVADYNVEAAQQGIVYIDEVDKITKKAE 1603
            FVNVPFVIADATTLTQAGYVGEDVESILYKLLM ADYNV AAQQGIVYIDEVDKITKKAE
Sbjct: 234  FVNVPFVIADATTLTQAGYVGEDVESILYKLLMAADYNVAAAQQGIVYIDEVDKITKKAE 293

Query: 1602 SLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFIDL 1423
            S+NISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFIDL
Sbjct: 294  SVNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFIDL 353

Query: 1422 EKTISERRQDSSIGFGAPVRANMRTGGLTNAAITSSLLETVESSDLIAYGLIPEFVGRFP 1243
            EKTISERRQDSSIGFGAPVRANMR G +T+AA+TSSLLETVES DLI+YGLIPEFVGRFP
Sbjct: 354  EKTISERRQDSSIGFGAPVRANMRMGSVTSAAVTSSLLETVESGDLISYGLIPEFVGRFP 413

Query: 1242 VLVSLSALSEDQLVQVLIEPKNALGKQYRKMFQMNDVKLHFTEVALRLIARKAMARSTGA 1063
            VLVSLSAL+E+QLVQVL EPKNALGKQY+KMFQMN V+LHFTE ALRLIA+KA+ ++TGA
Sbjct: 414  VLVSLSALTENQLVQVLTEPKNALGKQYKKMFQMNGVRLHFTENALRLIAKKAITKNTGA 473

Query: 1062 RGLRSLLENILMDAMYEIPDLETGKDKIDAVVVDEEAVGSMERSGCGAKILYGDGAFELY 883
            RGLR++LENILMDAMYEIPD++TG+D IDAVVVDEEAVG+ E  G G +ILYG GA + Y
Sbjct: 474  RGLRAILENILMDAMYEIPDVKTGEDIIDAVVVDEEAVGT-EGCGTGGRILYGKGALDRY 532

Query: 882  LSQQKSKEFETREEGSERMPDAEPELPSIVVSM 784
            L++ K K+ E   +GS+  P+ E EL SIV SM
Sbjct: 533  LAENKLKDSERTVDGSDGDPEVETELSSIVASM 565


>ref|XP_003634146.1| PREDICTED: ATP-dependent Clp protease ATP-binding subunit ClpX-like
            isoform 2 [Vitis vinifera]
          Length = 577

 Score =  702 bits (1811), Expect = 0.0
 Identities = 390/567 (68%), Positives = 435/567 (76%), Gaps = 26/567 (4%)
 Frame = -1

Query: 2406 KYFVFNHYMHIGRIINTTTHYNNQRTPTKCIGDFSIKR-PYLFYPFKMVSFKGDYDDK-- 2236
            +YF+ NH MH GR+ N+   +        C   F+    PY F  FK VS +G+  DK  
Sbjct: 22   RYFILNH-MHAGRLPNSYISHK-----PNCDHCFTHSHTPYHFTSFKPVSLRGELVDKGL 75

Query: 2235 --------CRVXXXXXXXXG-----------EPPEFWQPPGGDGVIM---AAPDXXXXXX 2122
                     +V                    +PPE W    GDG+++    +        
Sbjct: 76   EFFDNQRFSKVGFSTNESKKLSRDTILNSFGDPPEVWS---GDGIVVRQGGSGSNLVRGG 132

Query: 2121 XXXXXXXXXXXXXXXXSKDGCWGGANMGNDFPTPKEICQGLDKFVIGQERAKKVLSVAVY 1942
                            SKD  WGG+N+G++FPTPKEIC+GLDKFVIGQERAKKVLSVAVY
Sbjct: 133  GGAGANGGAGSGFGSNSKDESWGGSNLGHNFPTPKEICRGLDKFVIGQERAKKVLSVAVY 192

Query: 1941 NHYKRIYFESQPKCAEGSTNGEDNDSVELEKSNVLLMGPTGSGKTLLAKTLARFVNVPFV 1762
            NHYKRIY +S  KC +      DNDSVELEKSN+LLMGPTGSGKTLLAKTLARFVNVPFV
Sbjct: 193  NHYKRIYHQSLQKC-DDKAEATDNDSVELEKSNILLMGPTGSGKTLLAKTLARFVNVPFV 251

Query: 1761 IADATTLTQAGYVGEDVESILYKLLMVADYNVEAAQQGIVYIDEVDKITKKAESLNISRD 1582
            IADATTLTQAGYVGEDVESILYKLLMVADYNV AAQQGIVYIDEVDKITKKAESLN+SRD
Sbjct: 252  IADATTLTQAGYVGEDVESILYKLLMVADYNVAAAQQGIVYIDEVDKITKKAESLNLSRD 311

Query: 1581 VSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFIDLEKTISER 1402
            VSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFIDLEKTISER
Sbjct: 312  VSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFIDLEKTISER 371

Query: 1401 RQDSSIGFGAPVRANMRTGGLTNAAITSSLLETVESSDLIAYGLIPEFVGRFPVLVSLSA 1222
            RQDSSIGFGAPVRANMRTGG T+AA+ SSLLETVESSDLI+YGLIPEFVGRFP+LVSLSA
Sbjct: 372  RQDSSIGFGAPVRANMRTGGPTDAAVASSLLETVESSDLISYGLIPEFVGRFPILVSLSA 431

Query: 1221 LSEDQLVQVLIEPKNALGKQYRKMFQMNDVKLHFTEVALRLIARKAMARSTGARGLRSLL 1042
            L+E+QLV+VL EPKNALGKQY+KMFQMN VKLHFT+ ALRLI+RKAM+++TGARGLRS+L
Sbjct: 432  LTENQLVEVLTEPKNALGKQYKKMFQMNGVKLHFTKNALRLISRKAMSKNTGARGLRSIL 491

Query: 1041 ENILMDAMYEIPDLETGKDKIDAVVVDEEAVGSMERSGCGAKILYGDGAFELYLSQQKSK 862
            ENILM+AMYEIPD+ TG D IDAVVVD+EAVGS +  G GAKILYG GA + YLSQ K K
Sbjct: 492  ENILMNAMYEIPDVRTGNDIIDAVVVDDEAVGS-DGHGFGAKILYGKGALDCYLSQHKLK 550

Query: 861  EFETREEG-SERMPDAEPELPSIVVSM 784
            E ET  EG S+   +AE E+PSIV SM
Sbjct: 551  ETETPMEGSSDGEAEAEAEIPSIVASM 577


>ref|XP_002272792.1| PREDICTED: ATP-dependent Clp protease ATP-binding subunit ClpX-like
            isoform 1 [Vitis vinifera]
          Length = 583

 Score =  697 bits (1799), Expect = 0.0
 Identities = 390/572 (68%), Positives = 436/572 (76%), Gaps = 31/572 (5%)
 Frame = -1

Query: 2406 KYFVFNHYMHIGRIINTTTHYNNQRTPTKCIGDFSIKR-PYLFYPFKMVSFKGDYDDK-- 2236
            +YF+ NH MH GR+ N+   +        C   F+    PY F  FK VS +G+  DK  
Sbjct: 22   RYFILNH-MHAGRLPNSYISHK-----PNCDHCFTHSHTPYHFTSFKPVSLRGELVDKGL 75

Query: 2235 --------CRVXXXXXXXXG-----------EPPEFWQPPGGDGVIM---AAPDXXXXXX 2122
                     +V                    +PPE W    GDG+++    +        
Sbjct: 76   EFFDNQRFSKVGFSTNESKKLSRDTILNSFGDPPEVWS---GDGIVVRQGGSGSNLVRGG 132

Query: 2121 XXXXXXXXXXXXXXXXSKDGCWGGANMGNDFPTPKEICQGLDKFVIGQERAKKVLSVAVY 1942
                            SKD  WGG+N+G++FPTPKEIC+GLDKFVIGQERAKKVLSVAVY
Sbjct: 133  GGAGANGGAGSGFGSNSKDESWGGSNLGHNFPTPKEICRGLDKFVIGQERAKKVLSVAVY 192

Query: 1941 NHYKRIYFESQPKCAEGSTNGE-----DNDSVELEKSNVLLMGPTGSGKTLLAKTLARFV 1777
            NHYKRIY +S  K     T+ +     DNDSVELEKSN+LLMGPTGSGKTLLAKTLARFV
Sbjct: 193  NHYKRIYHQSLQKWPAEDTSDDKAEATDNDSVELEKSNILLMGPTGSGKTLLAKTLARFV 252

Query: 1776 NVPFVIADATTLTQAGYVGEDVESILYKLLMVADYNVEAAQQGIVYIDEVDKITKKAESL 1597
            NVPFVIADATTLTQAGYVGEDVESILYKLLMVADYNV AAQQGIVYIDEVDKITKKAESL
Sbjct: 253  NVPFVIADATTLTQAGYVGEDVESILYKLLMVADYNVAAAQQGIVYIDEVDKITKKAESL 312

Query: 1596 NISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFIDLEK 1417
            N+SRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFIDLEK
Sbjct: 313  NLSRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFIDLEK 372

Query: 1416 TISERRQDSSIGFGAPVRANMRTGGLTNAAITSSLLETVESSDLIAYGLIPEFVGRFPVL 1237
            TISERRQDSSIGFGAPVRANMRTGG T+AA+ SSLLETVESSDLI+YGLIPEFVGRFP+L
Sbjct: 373  TISERRQDSSIGFGAPVRANMRTGGPTDAAVASSLLETVESSDLISYGLIPEFVGRFPIL 432

Query: 1236 VSLSALSEDQLVQVLIEPKNALGKQYRKMFQMNDVKLHFTEVALRLIARKAMARSTGARG 1057
            VSLSAL+E+QLV+VL EPKNALGKQY+KMFQMN VKLHFT+ ALRLI+RKAM+++TGARG
Sbjct: 433  VSLSALTENQLVEVLTEPKNALGKQYKKMFQMNGVKLHFTKNALRLISRKAMSKNTGARG 492

Query: 1056 LRSLLENILMDAMYEIPDLETGKDKIDAVVVDEEAVGSMERSGCGAKILYGDGAFELYLS 877
            LRS+LENILM+AMYEIPD+ TG D IDAVVVD+EAVGS +  G GAKILYG GA + YLS
Sbjct: 493  LRSILENILMNAMYEIPDVRTGNDIIDAVVVDDEAVGS-DGHGFGAKILYGKGALDCYLS 551

Query: 876  QQKSKEFETREEG-SERMPDAEPELPSIVVSM 784
            Q K KE ET  EG S+   +AE E+PSIV SM
Sbjct: 552  QHKLKETETPMEGSSDGEAEAEAEIPSIVASM 583


>emb|CBI23009.3| unnamed protein product [Vitis vinifera]
          Length = 583

 Score =  694 bits (1791), Expect = 0.0
 Identities = 389/572 (68%), Positives = 435/572 (76%), Gaps = 31/572 (5%)
 Frame = -1

Query: 2406 KYFVFNHYMHIGRIINTTTHYNNQRTPTKCIGDFSIKR-PYLFYPFKMVSFKGDYDDK-- 2236
            +YF+ NH MH GR+ N+   +        C   F+    PY F  FK VS +G+  DK  
Sbjct: 22   RYFILNH-MHAGRLPNSYISHK-----PNCDHCFTHSHTPYHFTSFKPVSLRGELVDKGL 75

Query: 2235 --------CRVXXXXXXXXG-----------EPPEFWQPPGGDGVIM---AAPDXXXXXX 2122
                     +V                    +PPE W    GDG+++    +        
Sbjct: 76   EFFDNQRFSKVGFSTNESKKLSRDTILNSFGDPPEVWS---GDGIVVRQGGSGSNLVRGG 132

Query: 2121 XXXXXXXXXXXXXXXXSKDGCWGGANMGNDFPTPKEICQGLDKFVIGQERAKKVLSVAVY 1942
                            SKD  WGG+N+G++FPTPKEIC+GLDKFVIGQERAKKVLSVAVY
Sbjct: 133  GGAGANGGAGSGFGSNSKDESWGGSNLGHNFPTPKEICRGLDKFVIGQERAKKVLSVAVY 192

Query: 1941 NHYKRIYFESQPKCAEGSTNGE-----DNDSVELEKSNVLLMGPTGSGKTLLAKTLARFV 1777
            NHYKRIY +S  K     T+ +     DNDSVELEKSN+LLMGPTGSGKTLLAKTLARFV
Sbjct: 193  NHYKRIYHQSLQKWPAEDTSDDKAEATDNDSVELEKSNILLMGPTGSGKTLLAKTLARFV 252

Query: 1776 NVPFVIADATTLTQAGYVGEDVESILYKLLMVADYNVEAAQQGIVYIDEVDKITKKAESL 1597
            NVPFVIADATTLTQA YVGEDVESILYKLLMVADYNV AAQQGIVYIDEVDKITKKAESL
Sbjct: 253  NVPFVIADATTLTQARYVGEDVESILYKLLMVADYNVAAAQQGIVYIDEVDKITKKAESL 312

Query: 1596 NISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFIDLEK 1417
            N+SRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFIDLEK
Sbjct: 313  NLSRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFIDLEK 372

Query: 1416 TISERRQDSSIGFGAPVRANMRTGGLTNAAITSSLLETVESSDLIAYGLIPEFVGRFPVL 1237
            TISERRQDSSIGFGAPVRANMRTGG T+AA+ SSLLETVESSDLI+YGLIPEFVGRFP+L
Sbjct: 373  TISERRQDSSIGFGAPVRANMRTGGPTDAAVASSLLETVESSDLISYGLIPEFVGRFPIL 432

Query: 1236 VSLSALSEDQLVQVLIEPKNALGKQYRKMFQMNDVKLHFTEVALRLIARKAMARSTGARG 1057
            VSLSAL+E+QLV+VL EPKNALGKQY+KMFQMN VKLHFT+ ALRLI+RKAM+++TGARG
Sbjct: 433  VSLSALTENQLVEVLTEPKNALGKQYKKMFQMNGVKLHFTKNALRLISRKAMSKNTGARG 492

Query: 1056 LRSLLENILMDAMYEIPDLETGKDKIDAVVVDEEAVGSMERSGCGAKILYGDGAFELYLS 877
            LRS+LENILM+AMYEIPD+ TG D IDAVVVD+EAVGS +  G GAKILYG GA + YLS
Sbjct: 493  LRSILENILMNAMYEIPDVRTGNDIIDAVVVDDEAVGS-DGHGFGAKILYGKGALDCYLS 551

Query: 876  QQKSKEFETREEG-SERMPDAEPELPSIVVSM 784
            Q K KE ET  EG S+   +AE E+PSIV SM
Sbjct: 552  QHKLKETETPMEGSSDGEAEAEAEIPSIVASM 583


>ref|XP_002864237.1| hypothetical protein ARALYDRAFT_918413 [Arabidopsis lyrata subsp.
            lyrata] gi|297310072|gb|EFH40496.1| hypothetical protein
            ARALYDRAFT_918413 [Arabidopsis lyrata subsp. lyrata]
          Length = 572

 Score =  685 bits (1767), Expect = 0.0
 Identities = 360/482 (74%), Positives = 403/482 (83%), Gaps = 10/482 (2%)
 Frame = -1

Query: 2199 EPPEFWQPPGGDGVIM----AAPDXXXXXXXXXXXXXXXXXXXXXXSKDGCWGGANMGND 2032
            +PP+ WQPPG DGV +    ++ +                      SK+ CWGG+N+G+D
Sbjct: 92   DPPDLWQPPG-DGVSVRVNGSSVNLGRGGGGGGSSPGGPGNGTGSNSKEDCWGGSNLGSD 150

Query: 2031 FPTPKEICQGLDKFVIGQERAKKVLSVAVYNHYKRIYFESQPKCAEGSTNGE-----DND 1867
            FPTPKEIC+GL+KFVIGQERAKKVLSVAVYNHYKRIY ES  K + G T+       D+D
Sbjct: 151  FPTPKEICKGLNKFVIGQERAKKVLSVAVYNHYKRIYHESSQKRSAGETDSTAVKPADDD 210

Query: 1866 SVELEKSNVLLMGPTGSGKTLLAKTLARFVNVPFVIADATTLTQAGYVGEDVESILYKLL 1687
             VELEKSN+LLMGPTGSGKTLLAKTLARFVNVPFVIADATTLTQAGYVGEDVESILYKLL
Sbjct: 211  MVELEKSNILLMGPTGSGKTLLAKTLARFVNVPFVIADATTLTQAGYVGEDVESILYKLL 270

Query: 1686 MVADYNVEAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKG 1507
             VADYNV AAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGT+VNVPEKG
Sbjct: 271  TVADYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTIVNVPEKG 330

Query: 1506 ARKHPRGDNIQIDTKDILFICGGAFIDLEKTISERRQDSSIGFGAPVRANMRTGGLTNAA 1327
            ARKHPRGDNIQIDTKDILFICGGAF+D+EKTISERR DSSIGFGAPVRANMR GG+TNAA
Sbjct: 331  ARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRHDSSIGFGAPVRANMRAGGVTNAA 390

Query: 1326 ITSSLLETVESSDLIAYGLIPEFVGRFPVLVSLSALSEDQLVQVLIEPKNALGKQYRKMF 1147
            + S+L+ETVESSDLIAYGLIPEFVGRFPVLVSLSAL+E+QL+QVL EPKNALGKQY+KM+
Sbjct: 391  VASNLMETVESSDLIAYGLIPEFVGRFPVLVSLSALTENQLMQVLTEPKNALGKQYKKMY 450

Query: 1146 QMNDVKLHFTEVALRLIARKAMARSTGARGLRSLLENILMDAMYEIPDLETGKDKIDAVV 967
            QMN VKLHFTE ALRLIARKA+ ++TGARGLRSLLE+ILMD+MYEIPD  TG D I+AVV
Sbjct: 451  QMNSVKLHFTESALRLIARKAITKNTGARGLRSLLESILMDSMYEIPDESTGSDMIEAVV 510

Query: 966  VDEEAVGSMERSGCGAKILYGDGAFELYLSQQKSKEF-ETREEGSERMPDAEPELPSIVV 790
            VDEEAV    R G GAKIL G GA   YLS+ KSK+  +T ++GS+   + E E+PS+V 
Sbjct: 511  VDEEAVEGEGRRGSGAKILRGKGALGRYLSETKSKDSPQTTKDGSDGETEVEAEIPSVVA 570

Query: 789  SM 784
            SM
Sbjct: 571  SM 572


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