BLASTX nr result

ID: Coptis25_contig00006053 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00006053
         (1206 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002285276.2| PREDICTED: transcription initiation factor T...   680   0.0  
ref|XP_003631761.1| PREDICTED: transcription initiation factor T...   680   0.0  
ref|XP_002309672.1| predicted protein [Populus trichocarpa] gi|2...   669   0.0  
ref|XP_002515435.1| protein with unknown function [Ricinus commu...   665   0.0  
ref|XP_004145505.1| PREDICTED: transcription initiation factor T...   663   0.0  

>ref|XP_002285276.2| PREDICTED: transcription initiation factor TFIID subunit 5-like
            isoform 1 [Vitis vinifera]
          Length = 667

 Score =  680 bits (1754), Expect = 0.0
 Identities = 330/405 (81%), Positives = 361/405 (89%), Gaps = 5/405 (1%)
 Frame = -3

Query: 1201 SISDDADAVILVGSSQDTAKQINEKEIRWGLLVDSIEDRLEKASSLMSDSEKTEGEFKEG 1022
            SISDDA+ V L+GSSQD A QIN+KEI WGLL  S+E+RLEKA  L+SDSEK EGE KE 
Sbjct: 197  SISDDAEVVTLIGSSQDDANQINQKEIHWGLLEGSLEERLEKAGGLLSDSEKAEGEVKET 256

Query: 1021 DVDENKKRSGDGGKQGTSVKKLKKDKIVGTTGKSVRSETNTVSMAPRVKPELTLPVLPTE 842
            D +ENKKRS +GGKQG+S+KKLKKDK+VG  GK+ R E N VSMAPRVKPEL LPV+PTE
Sbjct: 257  DTEENKKRSAEGGKQGSSIKKLKKDKVVGAAGKTARPEANAVSMAPRVKPELALPVMPTE 316

Query: 841  VEHSILEDLRNRVQLGSAALPSVCFYTFLNTHNGLNCSSIS*DGSLVTGGFSDSSLKVWD 662
            VE SILEDLRNRVQL S ALPSV FYTF+NTHN LNCSSIS DGSLV GGFSDSSLKVWD
Sbjct: 317  VEQSILEDLRNRVQLSSMALPSVSFYTFINTHNSLNCSSISHDGSLVAGGFSDSSLKVWD 376

Query: 661  MAKIGQ----ATVQGENG-TPTEQLLGSENGRRSYTLLQGHAGPVYSSTFSPLGDFILSS 497
            M+K+GQ    + +QG+N   PTEQ+LG+  G+RSYTL QGH+GPVYS+TFSPLGDFILSS
Sbjct: 377  MSKLGQQAATSIMQGDNDLAPTEQILGTSGGKRSYTLFQGHSGPVYSATFSPLGDFILSS 436

Query: 496  SSDSTIRLWSTKLNANLVCYKGHNYPVWDVQFSPMGHYFASSSHDRTARIWSMDRIQPLR 317
            S+DSTIRLWSTKLNANLVCYKGHNYPVWDVQFSPMGHYFASSSHDRTARIWSMDRIQPLR
Sbjct: 437  SADSTIRLWSTKLNANLVCYKGHNYPVWDVQFSPMGHYFASSSHDRTARIWSMDRIQPLR 496

Query: 316  IMAGHLSDVDCVRWHANCNYIATGSSDKTVRLWDVQSGECVRIFIGHRSMILSLAMSPDG 137
            IMAGHLSDVDCV+WH NCNYIATGSSDKTVRLWDVQSGECVRIFIGHRSM+LSLAMSPDG
Sbjct: 497  IMAGHLSDVDCVQWHINCNYIATGSSDKTVRLWDVQSGECVRIFIGHRSMVLSLAMSPDG 556

Query: 136  RYMASGDEEGTIMMWDLSSGRCITPLMGHTSCVWTLDFSGEGSLL 2
            +YMASGDE+GTIMMWDLSSGRC+ PLMGH SCVW+L FS EGSLL
Sbjct: 557  QYMASGDEDGTIMMWDLSSGRCVMPLMGHMSCVWSLAFSCEGSLL 601


>ref|XP_003631761.1| PREDICTED: transcription initiation factor TFIID subunit 5-like
            isoform 2 [Vitis vinifera] gi|296082065|emb|CBI21070.3|
            unnamed protein product [Vitis vinifera]
          Length = 676

 Score =  680 bits (1754), Expect = 0.0
 Identities = 330/405 (81%), Positives = 361/405 (89%), Gaps = 5/405 (1%)
 Frame = -3

Query: 1201 SISDDADAVILVGSSQDTAKQINEKEIRWGLLVDSIEDRLEKASSLMSDSEKTEGEFKEG 1022
            SISDDA+ V L+GSSQD A QIN+KEI WGLL  S+E+RLEKA  L+SDSEK EGE KE 
Sbjct: 204  SISDDAEVVTLIGSSQDDANQINQKEIHWGLLEGSLEERLEKAGGLLSDSEKAEGEVKET 263

Query: 1021 DVDENKKRSGDGGKQGTSVKKLKKDKIVGTTGKSVRSETNTVSMAPRVKPELTLPVLPTE 842
            D +ENKKRS +GGKQG+S+KKLKKDK+VG  GK+ R E N VSMAPRVKPEL LPV+PTE
Sbjct: 264  DTEENKKRSAEGGKQGSSIKKLKKDKVVGAAGKTARPEANAVSMAPRVKPELALPVMPTE 323

Query: 841  VEHSILEDLRNRVQLGSAALPSVCFYTFLNTHNGLNCSSIS*DGSLVTGGFSDSSLKVWD 662
            VE SILEDLRNRVQL S ALPSV FYTF+NTHN LNCSSIS DGSLV GGFSDSSLKVWD
Sbjct: 324  VEQSILEDLRNRVQLSSMALPSVSFYTFINTHNSLNCSSISHDGSLVAGGFSDSSLKVWD 383

Query: 661  MAKIGQ----ATVQGENG-TPTEQLLGSENGRRSYTLLQGHAGPVYSSTFSPLGDFILSS 497
            M+K+GQ    + +QG+N   PTEQ+LG+  G+RSYTL QGH+GPVYS+TFSPLGDFILSS
Sbjct: 384  MSKLGQQAATSIMQGDNDLAPTEQILGTSGGKRSYTLFQGHSGPVYSATFSPLGDFILSS 443

Query: 496  SSDSTIRLWSTKLNANLVCYKGHNYPVWDVQFSPMGHYFASSSHDRTARIWSMDRIQPLR 317
            S+DSTIRLWSTKLNANLVCYKGHNYPVWDVQFSPMGHYFASSSHDRTARIWSMDRIQPLR
Sbjct: 444  SADSTIRLWSTKLNANLVCYKGHNYPVWDVQFSPMGHYFASSSHDRTARIWSMDRIQPLR 503

Query: 316  IMAGHLSDVDCVRWHANCNYIATGSSDKTVRLWDVQSGECVRIFIGHRSMILSLAMSPDG 137
            IMAGHLSDVDCV+WH NCNYIATGSSDKTVRLWDVQSGECVRIFIGHRSM+LSLAMSPDG
Sbjct: 504  IMAGHLSDVDCVQWHINCNYIATGSSDKTVRLWDVQSGECVRIFIGHRSMVLSLAMSPDG 563

Query: 136  RYMASGDEEGTIMMWDLSSGRCITPLMGHTSCVWTLDFSGEGSLL 2
            +YMASGDE+GTIMMWDLSSGRC+ PLMGH SCVW+L FS EGSLL
Sbjct: 564  QYMASGDEDGTIMMWDLSSGRCVMPLMGHMSCVWSLAFSCEGSLL 608


>ref|XP_002309672.1| predicted protein [Populus trichocarpa] gi|222855648|gb|EEE93195.1|
            predicted protein [Populus trichocarpa]
          Length = 675

 Score =  669 bits (1726), Expect = 0.0
 Identities = 326/406 (80%), Positives = 358/406 (88%), Gaps = 5/406 (1%)
 Frame = -3

Query: 1204 ISISDDADAVILVGSSQDTAKQINEKEIRWGLLVDSIEDRLEKASSLMSDSEKTEGEFKE 1025
            ISISDD DAV L+GSSQD A QIN+KEI WGLL DS+E+RLEK    +SDSEKTEGE KE
Sbjct: 202  ISISDDPDAVTLIGSSQDAANQINKKEIHWGLLEDSLEERLEKTGGFLSDSEKTEGETKE 261

Query: 1024 GDVDENKKRSGDGGKQGTSVKKLKKDKIVGTTGKSVRSETNTVSMAPRVKPELTLPVLPT 845
            GD+DENKKRS DGGKQG S+KK KKDK    T K+VR E NTV  APRVKPEL LPV+P 
Sbjct: 262  GDMDENKKRSMDGGKQGASIKKSKKDKAASATAKAVRLEANTVPAAPRVKPELPLPVMPA 321

Query: 844  EVEHSILEDLRNRVQLGSAALPSVCFYTFLNTHNGLNCSSIS*DGSLVTGGFSDSSLKVW 665
            EVE SILEDLRNRVQL S  LPSV FYTF+NTHNGLNCSSIS DGSLV GGFSDSSLKVW
Sbjct: 322  EVEQSILEDLRNRVQLSSTTLPSVSFYTFINTHNGLNCSSISHDGSLVAGGFSDSSLKVW 381

Query: 664  DMAKIGQ----ATVQGEN-GTPTEQLLGSENGRRSYTLLQGHAGPVYSSTFSPLGDFILS 500
            DMAK+GQ    + +QGEN   P+E +LG  +G+RSYTL QGH+GPV+S+TFSPLGDFILS
Sbjct: 382  DMAKLGQQAGNSILQGENDAAPSEHVLGPNSGKRSYTLFQGHSGPVHSATFSPLGDFILS 441

Query: 499  SSSDSTIRLWSTKLNANLVCYKGHNYPVWDVQFSPMGHYFASSSHDRTARIWSMDRIQPL 320
            SS+D+T+RLWST+LNANLVCYKGHNYPVWDVQFSP+GHYFAS+SHDRTARIWSMDRIQPL
Sbjct: 442  SSADTTVRLWSTELNANLVCYKGHNYPVWDVQFSPVGHYFASASHDRTARIWSMDRIQPL 501

Query: 319  RIMAGHLSDVDCVRWHANCNYIATGSSDKTVRLWDVQSGECVRIFIGHRSMILSLAMSPD 140
            RIMAGHLSDVDCV+WHANCNYIATGSSDKTVRLWDVQSGECVRIFIGHRSMILSLAMSPD
Sbjct: 502  RIMAGHLSDVDCVQWHANCNYIATGSSDKTVRLWDVQSGECVRIFIGHRSMILSLAMSPD 561

Query: 139  GRYMASGDEEGTIMMWDLSSGRCITPLMGHTSCVWTLDFSGEGSLL 2
            GRYMASGDE+G+IMMWDLSSGRCI+P+MGH SCVW+L FS E SLL
Sbjct: 562  GRYMASGDEDGSIMMWDLSSGRCISPMMGHHSCVWSLAFSCESSLL 607


>ref|XP_002515435.1| protein with unknown function [Ricinus communis]
            gi|223545379|gb|EEF46884.1| protein with unknown function
            [Ricinus communis]
          Length = 670

 Score =  665 bits (1716), Expect = 0.0
 Identities = 326/405 (80%), Positives = 357/405 (88%), Gaps = 5/405 (1%)
 Frame = -3

Query: 1201 SISDDADAVILVGSSQDTAKQINEKEIRWGLLVDSIEDRLEKASSLMSDSEKTEGEFKEG 1022
            SISDD + V L+GSSQD A QIN+KEI WGLL DS+E+ LEKA  L SDSEKTEGE KEG
Sbjct: 198  SISDDDEVVTLIGSSQDAANQINKKEIHWGLLEDSMEEHLEKAGGLHSDSEKTEGEAKEG 257

Query: 1021 DVDENKKRSGDGGKQGTSVKKLKKDKIVGTTGKSVRSETNTVSMAPRVKPELTLPVLPTE 842
            D+DE+KKRS +GGKQGTSVKK+KKDK    T K VR ETN+   APRVKPEL LPV+PTE
Sbjct: 258  DMDESKKRSIEGGKQGTSVKKMKKDKATSATAKVVRPETNSAPTAPRVKPELPLPVIPTE 317

Query: 841  VEHSILEDLRNRVQLGSAALPSVCFYTFLNTHNGLNCSSIS*DGSLVTGGFSDSSLKVWD 662
            VE SILEDLRNRVQL SAALPSV FYTF+NTHNGLNCSSIS DGSLV GGFSDSSLKVWD
Sbjct: 318  VEQSILEDLRNRVQLSSAALPSVSFYTFINTHNGLNCSSISHDGSLVAGGFSDSSLKVWD 377

Query: 661  MAKIGQ----ATVQGENGTP-TEQLLGSENGRRSYTLLQGHAGPVYSSTFSPLGDFILSS 497
            MAK+GQ    + +QG N T  +E  LG+   +RSYTL QGH+GPVYS+TFSPLGDFILSS
Sbjct: 378  MAKLGQQGSNSVLQGANDTAASEHFLGANGAKRSYTLFQGHSGPVYSATFSPLGDFILSS 437

Query: 496  SSDSTIRLWSTKLNANLVCYKGHNYPVWDVQFSPMGHYFASSSHDRTARIWSMDRIQPLR 317
            S+D+TIRLWSTKLNANLVCYKGHNYPVWDVQFSP+GHYFAS+SHDRTARIWSMDR+QPLR
Sbjct: 438  SADTTIRLWSTKLNANLVCYKGHNYPVWDVQFSPVGHYFASASHDRTARIWSMDRLQPLR 497

Query: 316  IMAGHLSDVDCVRWHANCNYIATGSSDKTVRLWDVQSGECVRIFIGHRSMILSLAMSPDG 137
            I+AGHLSDVDCV+WHANCNYIATGSSDKTVRLWDVQSGECVRIFIGHRSMILSLAMSPDG
Sbjct: 498  ILAGHLSDVDCVQWHANCNYIATGSSDKTVRLWDVQSGECVRIFIGHRSMILSLAMSPDG 557

Query: 136  RYMASGDEEGTIMMWDLSSGRCITPLMGHTSCVWTLDFSGEGSLL 2
            R+MAS DE+GTIMMWDLSSGRC++PLMGH SCVWTL FS EGSLL
Sbjct: 558  RFMASADEDGTIMMWDLSSGRCVSPLMGHNSCVWTLAFSCEGSLL 602


>ref|XP_004145505.1| PREDICTED: transcription initiation factor TFIID subunit 5-like
            [Cucumis sativus] gi|449485181|ref|XP_004157092.1|
            PREDICTED: transcription initiation factor TFIID subunit
            5-like [Cucumis sativus]
          Length = 674

 Score =  663 bits (1711), Expect = 0.0
 Identities = 319/405 (78%), Positives = 360/405 (88%), Gaps = 5/405 (1%)
 Frame = -3

Query: 1201 SISDDADAVILVGSSQDTAKQINEKEIRWGLLVDSIEDRLEKASSLMSDSEKTEGEFKEG 1022
            SISDDA+ V L GS+QDTA QIN+KE+ WGLL DS+E+RLEKA+ L+SDSEK EGE K+G
Sbjct: 199  SISDDAELVTLTGSTQDTANQINKKEVHWGLLEDSLEERLEKAAGLLSDSEKAEGETKDG 258

Query: 1021 DVDENKKRSGDGGKQGTSVKKLKKDKIVGTTGKSVRSETNTVSMAPRVKPELTLPVLPTE 842
            DVDENKKR+ +GGKQG S+KK+KKDK    TGK++R+E N+ SMAPRVKPEL LP++ TE
Sbjct: 259  DVDENKKRTAEGGKQGGSIKKVKKDKTASATGKTLRAEANSASMAPRVKPELALPIISTE 318

Query: 841  VEHSILEDLRNRVQLGSAALPSVCFYTFLNTHNGLNCSSIS*DGSLVTGGFSDSSLKVWD 662
            VE SILEDLRNRVQL S ALPSV FYTF+NTHNGLNCSSIS DG+LV GGFSDSSLKVWD
Sbjct: 319  VEESILEDLRNRVQLSSVALPSVSFYTFINTHNGLNCSSISYDGALVAGGFSDSSLKVWD 378

Query: 661  MAKIGQ----ATVQGENGTPT-EQLLGSENGRRSYTLLQGHAGPVYSSTFSPLGDFILSS 497
            MAK+GQ      +Q EN   T + + G  +G+R YTL QGH+GPV+S+TFSP+GDF+LSS
Sbjct: 379  MAKLGQQAGNTVLQDENDMSTSDPVTGHTSGKRPYTLFQGHSGPVHSATFSPIGDFVLSS 438

Query: 496  SSDSTIRLWSTKLNANLVCYKGHNYPVWDVQFSPMGHYFASSSHDRTARIWSMDRIQPLR 317
            S+D+TIRLWSTKLNANLVCYKGHNYPVWDVQFSP+GHYFAS SHDRTARIWSMDRIQPLR
Sbjct: 439  SADTTIRLWSTKLNANLVCYKGHNYPVWDVQFSPVGHYFASCSHDRTARIWSMDRIQPLR 498

Query: 316  IMAGHLSDVDCVRWHANCNYIATGSSDKTVRLWDVQSGECVRIFIGHRSMILSLAMSPDG 137
            IMAGHLSDVDCV+WHANCNYIATGSSDKTVRLWDVQSGECVRIFIGHRSMILSLAMSPDG
Sbjct: 499  IMAGHLSDVDCVQWHANCNYIATGSSDKTVRLWDVQSGECVRIFIGHRSMILSLAMSPDG 558

Query: 136  RYMASGDEEGTIMMWDLSSGRCITPLMGHTSCVWTLDFSGEGSLL 2
            R+MASGDE+GTIMMWDLS+GRC+TPL+GHTSCVWTL FS EGSLL
Sbjct: 559  RFMASGDEDGTIMMWDLSTGRCVTPLIGHTSCVWTLAFSCEGSLL 603


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