BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00006046
         (753 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004170905.1| PREDICTED: 50S ribosomal protein L28, chloro...   182   7e-44
sp|P30956.1|RK28_TOBAC RecName: Full=50S ribosomal protein L28, ...   182   9e-44
ref|XP_004134049.1| PREDICTED: 50S ribosomal protein L28, chloro...   181   1e-43
ref|NP_565765.1| 50S ribosomal protein L28 [Arabidopsis thaliana...   178   9e-43
gb|AFK44373.1| unknown [Medicago truncatula]                          176   6e-42

>ref|XP_004170905.1| PREDICTED: 50S ribosomal protein L28, chloroplastic-like [Cucumis
           sativus]
          Length = 150

 Score =  182 bits (462), Expect = 7e-44
 Identities = 99/159 (62%), Positives = 119/159 (74%), Gaps = 2/159 (1%)
 Frame = -3

Query: 661 TMATASSGVLLSTHSTLHLPKTKPISSVYLKTQQQAVSSELGFLTSQLSGMKLSVDGFGP 482
           T A   SGV+ ++ + LH  +TKP             SS+LGFLTSQLSG+++S +    
Sbjct: 10  TPAATCSGVMTTSSTKLHF-RTKP-------------SSDLGFLTSQLSGIRISSN---- 51

Query: 481 QSLTKQLPISSSPFR--FQPIARRVCPLTGKKSNRANKVSFSNHKTKKLQFVNLQYKRIW 308
            SL     IS++P R   QP+ARR+CP TGKK+N+ N VSFSNHKTKKLQFVNLQYK++W
Sbjct: 52  HSLISPSSISTAPLRPSLQPVARRICPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVW 111

Query: 307 WEAGKRYVKLRLSTKALKTIEKNGLDAVAKKAGMDLRKE 191
           WEAGKR+VKLRLSTKALKTIEKNGLDAVAKKAG+DLRKE
Sbjct: 112 WEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE 150


>sp|P30956.1|RK28_TOBAC RecName: Full=50S ribosomal protein L28, chloroplastic; AltName:
           Full=CL28; Flags: Precursor gi|279656|pir||R5NT28
           ribosomal protein L28 precursor, chloroplast - tobacco
           gi|189096147|pdb|3BBO|Y Chain Y, Homology Model For The
           Spinach Chloroplast 50s Subunit Fitted To 9.4a Cryo-Em
           Map Of The 70s Chlororibosome gi|20016|emb|CAA48211.1|
           ribosomal protein CL28 [Nicotiana tabacum]
          Length = 151

 Score =  182 bits (461), Expect = 9e-44
 Identities = 99/161 (61%), Positives = 116/161 (72%), Gaps = 5/161 (3%)
 Frame = -3

Query: 658 MATASSGV-----LLSTHSTLHLPKTKPISSVYLKTQQQAVSSELGFLTSQLSGMKLSVD 494
           MAT  +G+     ++S+H T  + K   +        Q  +SSEL F+TSQLSG+K+S  
Sbjct: 1   MATMVAGISLRGPVMSSHRTFSVTKRASLP-------QSKLSSELSFVTSQLSGLKISST 53

Query: 493 GFGPQSLTKQLPISSSPFRFQPIARRVCPLTGKKSNRANKVSFSNHKTKKLQFVNLQYKR 314
            F   S    +P   S    QP+ARR+CP TGKKSNRANKVS SNHKTKKLQFVNLQYKR
Sbjct: 54  HFISSSAPLSVPFKPS---LQPVARRICPFTGKKSNRANKVSHSNHKTKKLQFVNLQYKR 110

Query: 313 IWWEAGKRYVKLRLSTKALKTIEKNGLDAVAKKAGMDLRKE 191
           IWWEAGKRYVKLRLSTKA+KTIEKNGLDAVAKKAG+DL K+
Sbjct: 111 IWWEAGKRYVKLRLSTKAIKTIEKNGLDAVAKKAGIDLSKK 151


>ref|XP_004134049.1| PREDICTED: 50S ribosomal protein L28, chloroplastic-like [Cucumis
           sativus]
          Length = 150

 Score =  181 bits (460), Expect = 1e-43
 Identities = 98/159 (61%), Positives = 119/159 (74%), Gaps = 2/159 (1%)
 Frame = -3

Query: 661 TMATASSGVLLSTHSTLHLPKTKPISSVYLKTQQQAVSSELGFLTSQLSGMKLSVDGFGP 482
           T A   SGV+ ++ + LH  +TKP             +S+LGFLTSQLSG+++S +    
Sbjct: 10  TPAATCSGVMTTSSTKLHF-RTKP-------------NSDLGFLTSQLSGIRISSN---- 51

Query: 481 QSLTKQLPISSSPFR--FQPIARRVCPLTGKKSNRANKVSFSNHKTKKLQFVNLQYKRIW 308
            SL     IS++P R   QP+ARR+CP TGKK+N+ N VSFSNHKTKKLQFVNLQYK++W
Sbjct: 52  HSLISPASISTAPLRPSLQPVARRICPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVW 111

Query: 307 WEAGKRYVKLRLSTKALKTIEKNGLDAVAKKAGMDLRKE 191
           WEAGKR+VKLRLSTKALKTIEKNGLDAVAKKAG+DLRKE
Sbjct: 112 WEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE 150


>ref|NP_565765.1| 50S ribosomal protein L28 [Arabidopsis thaliana]
           gi|21542433|sp|O22795.2|RK28_ARATH RecName: Full=50S
           ribosomal protein L28, chloroplastic; AltName:
           Full=CL28; Flags: Precursor gi|18252877|gb|AAL62365.1|
           putative chloroplast 50S ribosomal protein L28
           [Arabidopsis thaliana] gi|20196843|gb|AAB80662.2|
           putative chloroplast 50S ribosomal protein L28
           [Arabidopsis thaliana] gi|21387067|gb|AAM47937.1|
           putative chloroplast 50S ribosomal protein L28
           [Arabidopsis thaliana] gi|21592705|gb|AAM64654.1|
           putative chloroplast 50S ribosomal protein L28
           [Arabidopsis thaliana] gi|330253742|gb|AEC08836.1| 50S
           ribosomal protein L28 [Arabidopsis thaliana]
          Length = 143

 Score =  178 bits (452), Expect = 9e-43
 Identities = 90/132 (68%), Positives = 106/132 (80%)
 Frame = -3

Query: 586 SSVYLKTQQQAVSSELGFLTSQLSGMKLSVDGFGPQSLTKQLPISSSPFRFQPIARRVCP 407
           SS    T+    S ELGFLTSQLSG+++S   + P  +  ++ + S P     +ARR+CP
Sbjct: 15  SSAKSMTKSTVTSKELGFLTSQLSGLRIS---YTPSDVINRISLPSFPGIQPIVARRICP 71

Query: 406 LTGKKSNRANKVSFSNHKTKKLQFVNLQYKRIWWEAGKRYVKLRLSTKALKTIEKNGLDA 227
            TGKK+NRANKVSFSNHKTKKLQFVNLQYKR+WWEAGKR+VKLRLSTKALKTIEKNGLDA
Sbjct: 72  FTGKKANRANKVSFSNHKTKKLQFVNLQYKRVWWEAGKRFVKLRLSTKALKTIEKNGLDA 131

Query: 226 VAKKAGMDLRKE 191
           VAKKAG+DLRK+
Sbjct: 132 VAKKAGIDLRKK 143


>gb|AFK44373.1| unknown [Medicago truncatula]
          Length = 146

 Score =  176 bits (445), Expect = 6e-42
 Identities = 99/152 (65%), Positives = 114/152 (75%), Gaps = 1/152 (0%)
 Frame = -3

Query: 643 SGVLLSTHSTLHLPKTKPISSVYLKTQQQAVSSELGFLTSQLSGMKLSVDGFGPQSLTKQ 464
           +G  +S  +T      + ISS     +  + S +LGFL SQLSG+K+S       SL   
Sbjct: 2   AGSAVSLGNTFVFASMRSISSTNTH-KPSSFSPQLGFLNSQLSGLKIS----SQTSLKLP 56

Query: 463 LPISSSPFRFQPI-ARRVCPLTGKKSNRANKVSFSNHKTKKLQFVNLQYKRIWWEAGKRY 287
            PI +SPF  QPI A+RVCP TGKKSNRANKVSFSNHKTKKLQFVNLQYKR+WWEAGKR+
Sbjct: 57  TPIVASPF--QPIVAKRVCPFTGKKSNRANKVSFSNHKTKKLQFVNLQYKRVWWEAGKRF 114

Query: 286 VKLRLSTKALKTIEKNGLDAVAKKAGMDLRKE 191
           VKLRLSTKALKTIEKNGLDAVAKKAG+DL K+
Sbjct: 115 VKLRLSTKALKTIEKNGLDAVAKKAGIDLSKK 146