BLASTX nr result
ID: Coptis25_contig00006046
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis25_contig00006046 (753 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_004170905.1| PREDICTED: 50S ribosomal protein L28, chloro... 182 7e-44 sp|P30956.1|RK28_TOBAC RecName: Full=50S ribosomal protein L28, ... 182 9e-44 ref|XP_004134049.1| PREDICTED: 50S ribosomal protein L28, chloro... 181 1e-43 ref|NP_565765.1| 50S ribosomal protein L28 [Arabidopsis thaliana... 178 9e-43 gb|AFK44373.1| unknown [Medicago truncatula] 176 6e-42 >ref|XP_004170905.1| PREDICTED: 50S ribosomal protein L28, chloroplastic-like [Cucumis sativus] Length = 150 Score = 182 bits (462), Expect = 7e-44 Identities = 99/159 (62%), Positives = 119/159 (74%), Gaps = 2/159 (1%) Frame = -3 Query: 661 TMATASSGVLLSTHSTLHLPKTKPISSVYLKTQQQAVSSELGFLTSQLSGMKLSVDGFGP 482 T A SGV+ ++ + LH +TKP SS+LGFLTSQLSG+++S + Sbjct: 10 TPAATCSGVMTTSSTKLHF-RTKP-------------SSDLGFLTSQLSGIRISSN---- 51 Query: 481 QSLTKQLPISSSPFR--FQPIARRVCPLTGKKSNRANKVSFSNHKTKKLQFVNLQYKRIW 308 SL IS++P R QP+ARR+CP TGKK+N+ N VSFSNHKTKKLQFVNLQYK++W Sbjct: 52 HSLISPSSISTAPLRPSLQPVARRICPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVW 111 Query: 307 WEAGKRYVKLRLSTKALKTIEKNGLDAVAKKAGMDLRKE 191 WEAGKR+VKLRLSTKALKTIEKNGLDAVAKKAG+DLRKE Sbjct: 112 WEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE 150 >sp|P30956.1|RK28_TOBAC RecName: Full=50S ribosomal protein L28, chloroplastic; AltName: Full=CL28; Flags: Precursor gi|279656|pir||R5NT28 ribosomal protein L28 precursor, chloroplast - tobacco gi|189096147|pdb|3BBO|Y Chain Y, Homology Model For The Spinach Chloroplast 50s Subunit Fitted To 9.4a Cryo-Em Map Of The 70s Chlororibosome gi|20016|emb|CAA48211.1| ribosomal protein CL28 [Nicotiana tabacum] Length = 151 Score = 182 bits (461), Expect = 9e-44 Identities = 99/161 (61%), Positives = 116/161 (72%), Gaps = 5/161 (3%) Frame = -3 Query: 658 MATASSGV-----LLSTHSTLHLPKTKPISSVYLKTQQQAVSSELGFLTSQLSGMKLSVD 494 MAT +G+ ++S+H T + K + Q +SSEL F+TSQLSG+K+S Sbjct: 1 MATMVAGISLRGPVMSSHRTFSVTKRASLP-------QSKLSSELSFVTSQLSGLKISST 53 Query: 493 GFGPQSLTKQLPISSSPFRFQPIARRVCPLTGKKSNRANKVSFSNHKTKKLQFVNLQYKR 314 F S +P S QP+ARR+CP TGKKSNRANKVS SNHKTKKLQFVNLQYKR Sbjct: 54 HFISSSAPLSVPFKPS---LQPVARRICPFTGKKSNRANKVSHSNHKTKKLQFVNLQYKR 110 Query: 313 IWWEAGKRYVKLRLSTKALKTIEKNGLDAVAKKAGMDLRKE 191 IWWEAGKRYVKLRLSTKA+KTIEKNGLDAVAKKAG+DL K+ Sbjct: 111 IWWEAGKRYVKLRLSTKAIKTIEKNGLDAVAKKAGIDLSKK 151 >ref|XP_004134049.1| PREDICTED: 50S ribosomal protein L28, chloroplastic-like [Cucumis sativus] Length = 150 Score = 181 bits (460), Expect = 1e-43 Identities = 98/159 (61%), Positives = 119/159 (74%), Gaps = 2/159 (1%) Frame = -3 Query: 661 TMATASSGVLLSTHSTLHLPKTKPISSVYLKTQQQAVSSELGFLTSQLSGMKLSVDGFGP 482 T A SGV+ ++ + LH +TKP +S+LGFLTSQLSG+++S + Sbjct: 10 TPAATCSGVMTTSSTKLHF-RTKP-------------NSDLGFLTSQLSGIRISSN---- 51 Query: 481 QSLTKQLPISSSPFR--FQPIARRVCPLTGKKSNRANKVSFSNHKTKKLQFVNLQYKRIW 308 SL IS++P R QP+ARR+CP TGKK+N+ N VSFSNHKTKKLQFVNLQYK++W Sbjct: 52 HSLISPASISTAPLRPSLQPVARRICPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVW 111 Query: 307 WEAGKRYVKLRLSTKALKTIEKNGLDAVAKKAGMDLRKE 191 WEAGKR+VKLRLSTKALKTIEKNGLDAVAKKAG+DLRKE Sbjct: 112 WEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE 150 >ref|NP_565765.1| 50S ribosomal protein L28 [Arabidopsis thaliana] gi|21542433|sp|O22795.2|RK28_ARATH RecName: Full=50S ribosomal protein L28, chloroplastic; AltName: Full=CL28; Flags: Precursor gi|18252877|gb|AAL62365.1| putative chloroplast 50S ribosomal protein L28 [Arabidopsis thaliana] gi|20196843|gb|AAB80662.2| putative chloroplast 50S ribosomal protein L28 [Arabidopsis thaliana] gi|21387067|gb|AAM47937.1| putative chloroplast 50S ribosomal protein L28 [Arabidopsis thaliana] gi|21592705|gb|AAM64654.1| putative chloroplast 50S ribosomal protein L28 [Arabidopsis thaliana] gi|330253742|gb|AEC08836.1| 50S ribosomal protein L28 [Arabidopsis thaliana] Length = 143 Score = 178 bits (452), Expect = 9e-43 Identities = 90/132 (68%), Positives = 106/132 (80%) Frame = -3 Query: 586 SSVYLKTQQQAVSSELGFLTSQLSGMKLSVDGFGPQSLTKQLPISSSPFRFQPIARRVCP 407 SS T+ S ELGFLTSQLSG+++S + P + ++ + S P +ARR+CP Sbjct: 15 SSAKSMTKSTVTSKELGFLTSQLSGLRIS---YTPSDVINRISLPSFPGIQPIVARRICP 71 Query: 406 LTGKKSNRANKVSFSNHKTKKLQFVNLQYKRIWWEAGKRYVKLRLSTKALKTIEKNGLDA 227 TGKK+NRANKVSFSNHKTKKLQFVNLQYKR+WWEAGKR+VKLRLSTKALKTIEKNGLDA Sbjct: 72 FTGKKANRANKVSFSNHKTKKLQFVNLQYKRVWWEAGKRFVKLRLSTKALKTIEKNGLDA 131 Query: 226 VAKKAGMDLRKE 191 VAKKAG+DLRK+ Sbjct: 132 VAKKAGIDLRKK 143 >gb|AFK44373.1| unknown [Medicago truncatula] Length = 146 Score = 176 bits (445), Expect = 6e-42 Identities = 99/152 (65%), Positives = 114/152 (75%), Gaps = 1/152 (0%) Frame = -3 Query: 643 SGVLLSTHSTLHLPKTKPISSVYLKTQQQAVSSELGFLTSQLSGMKLSVDGFGPQSLTKQ 464 +G +S +T + ISS + + S +LGFL SQLSG+K+S SL Sbjct: 2 AGSAVSLGNTFVFASMRSISSTNTH-KPSSFSPQLGFLNSQLSGLKIS----SQTSLKLP 56 Query: 463 LPISSSPFRFQPI-ARRVCPLTGKKSNRANKVSFSNHKTKKLQFVNLQYKRIWWEAGKRY 287 PI +SPF QPI A+RVCP TGKKSNRANKVSFSNHKTKKLQFVNLQYKR+WWEAGKR+ Sbjct: 57 TPIVASPF--QPIVAKRVCPFTGKKSNRANKVSFSNHKTKKLQFVNLQYKRVWWEAGKRF 114 Query: 286 VKLRLSTKALKTIEKNGLDAVAKKAGMDLRKE 191 VKLRLSTKALKTIEKNGLDAVAKKAG+DL K+ Sbjct: 115 VKLRLSTKALKTIEKNGLDAVAKKAGIDLSKK 146