BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00006031
         (847 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002274308.1| PREDICTED: 5' exonuclease Apollo-like [Vitis...   389   e-106
emb|CBI37538.3| unnamed protein product [Vitis vinifera]              381   e-103
ref|XP_002309909.1| predicted protein [Populus trichocarpa] gi|2...   374   e-101
ref|XP_002529728.1| DNA cross-link repair protein pso2/snm1, put...   372   e-101
ref|XP_003528048.1| PREDICTED: 5' exonuclease Apollo-like [Glyci...   365   7e-99

>ref|XP_002274308.1| PREDICTED: 5' exonuclease Apollo-like [Vitis vinifera]
          Length = 552

 Score =  389 bits (999), Expect = e-106
 Identities = 178/251 (70%), Positives = 215/251 (85%)
 Frame = -2

Query: 756 MPIEMPIGLPFSVDTWSPSSDRKRHHFLTHAHKDHSSGITAHASYPIYSTHVTKTIVLQQ 577
           MPIEMP GLPFSVDTW+PSS +KRHHFLTHAHKDHSSGI+ H++YPIYSTH+TKT++LQQ
Sbjct: 1   MPIEMPRGLPFSVDTWTPSSKKKRHHFLTHAHKDHSSGISTHSAYPIYSTHLTKTLILQQ 60

Query: 576 YPQLDASLFVEIEIGGKVVIEDPDGTFSVSAFDANHCPGAIMFLFEGNFGNILHTGDCRL 397
           YPQLD SLFV IE+G  +V++DPDG F V+AFDANHCPGA+MFLFEG+FGNILHTGDCRL
Sbjct: 61  YPQLDDSLFVGIEVGQSMVVDDPDGRFGVTAFDANHCPGAVMFLFEGDFGNILHTGDCRL 120

Query: 396 TPECLQNLPEKYVGEKGREPKCCLDDLFLDCTFGNTFIKFPSKESAIRQVINCIRKHPNA 217
            PECLQNLP+KYV +KG+EPKC  D +FLDCTFG + +  PSK  AI+QVINCI KHP+A
Sbjct: 121 IPECLQNLPQKYVTKKGKEPKCQFDYVFLDCTFGRSSLHIPSKHLAIQQVINCIWKHPDA 180

Query: 216 PVVYLTCDLLAQDKLLVEVSRRFGSKVYVDRINNAECFQALTITAPEVLTEDESSRFQIF 37
           P+VYL  D+L Q+++L+ VSR FGSK++VD+ NN ECFQALT   PE+L++D SSRFQ+F
Sbjct: 181 PIVYLCSDMLGQEEILINVSRIFGSKIFVDKANNPECFQALTHMVPEILSQDPSSRFQVF 240

Query: 36  EGGFNKFYDRA 4
           E GF K  +RA
Sbjct: 241 E-GFPKLCERA 250


>emb|CBI37538.3| unnamed protein product [Vitis vinifera]
          Length = 558

 Score =  381 bits (978), Expect = e-103
 Identities = 174/247 (70%), Positives = 211/247 (85%)
 Frame = -2

Query: 744 MPIGLPFSVDTWSPSSDRKRHHFLTHAHKDHSSGITAHASYPIYSTHVTKTIVLQQYPQL 565
           MP GLPFSVDTW+PSS +KRHHFLTHAHKDHSSGI+ H++YPIYSTH+TKT++LQQYPQL
Sbjct: 39  MPRGLPFSVDTWTPSSKKKRHHFLTHAHKDHSSGISTHSAYPIYSTHLTKTLILQQYPQL 98

Query: 564 DASLFVEIEIGGKVVIEDPDGTFSVSAFDANHCPGAIMFLFEGNFGNILHTGDCRLTPEC 385
           D SLFV IE+G  +V++DPDG F V+AFDANHCPGA+MFLFEG+FGNILHTGDCRL PEC
Sbjct: 99  DDSLFVGIEVGQSMVVDDPDGRFGVTAFDANHCPGAVMFLFEGDFGNILHTGDCRLIPEC 158

Query: 384 LQNLPEKYVGEKGREPKCCLDDLFLDCTFGNTFIKFPSKESAIRQVINCIRKHPNAPVVY 205
           LQNLP+KYV +KG+EPKC  D +FLDCTFG + +  PSK  AI+QVINCI KHP+AP+VY
Sbjct: 159 LQNLPQKYVTKKGKEPKCQFDYVFLDCTFGRSSLHIPSKHLAIQQVINCIWKHPDAPIVY 218

Query: 204 LTCDLLAQDKLLVEVSRRFGSKVYVDRINNAECFQALTITAPEVLTEDESSRFQIFEGGF 25
           L  D+L Q+++L+ VSR FGSK++VD+ NN ECFQALT   PE+L++D SSRFQ+FE GF
Sbjct: 219 LCSDMLGQEEILINVSRIFGSKIFVDKANNPECFQALTHMVPEILSQDPSSRFQVFE-GF 277

Query: 24  NKFYDRA 4
            K  +RA
Sbjct: 278 PKLCERA 284


>ref|XP_002309909.1| predicted protein [Populus trichocarpa] gi|222852812|gb|EEE90359.1|
           predicted protein [Populus trichocarpa]
          Length = 537

 Score =  374 bits (959), Expect = e-101
 Identities = 174/252 (69%), Positives = 207/252 (82%)
 Frame = -2

Query: 756 MPIEMPIGLPFSVDTWSPSSDRKRHHFLTHAHKDHSSGITAHASYPIYSTHVTKTIVLQQ 577
           MPIE+P GLPFSVDTWSP+S RKRHHFLTHAHKDH+SGI  H+ YPIY+TH+TK +VLQ 
Sbjct: 1   MPIELPRGLPFSVDTWSPNSKRKRHHFLTHAHKDHTSGILTHSCYPIYATHLTKLLVLQN 60

Query: 576 YPQLDASLFVEIEIGGKVVIEDPDGTFSVSAFDANHCPGAIMFLFEGNFGNILHTGDCRL 397
           YPQL+ SLFV IE+G  VV  DPDG F V+AFDANHCPGA+MFLFEGNFGNILHTGDCRL
Sbjct: 61  YPQLEGSLFVGIEVGESVVFNDPDGEFKVTAFDANHCPGAVMFLFEGNFGNILHTGDCRL 120

Query: 396 TPECLQNLPEKYVGEKGREPKCCLDDLFLDCTFGNTFIKFPSKESAIRQVINCIRKHPNA 217
           TPE ++ LPEKY+ +KG+EP+C LD +FLDCTFG    K PSK SAI+QV+NCI KHP A
Sbjct: 121 TPEGVRCLPEKYISKKGKEPRCQLDYVFLDCTFGKFTQKLPSKHSAIQQVLNCIWKHPAA 180

Query: 216 PVVYLTCDLLAQDKLLVEVSRRFGSKVYVDRINNAECFQALTITAPEVLTEDESSRFQIF 37
            VVYLTCDLL Q+ +L  VS  FGSK++VD + N E F+ALT+T PE+LT+D SSRF +F
Sbjct: 181 TVVYLTCDLLGQEDVLAAVSETFGSKIFVDEVANTESFRALTLTVPEILTQDPSSRFHMF 240

Query: 36  EGGFNKFYDRAS 1
           + GF K Y+RA+
Sbjct: 241 D-GFPKLYERAA 251


>ref|XP_002529728.1| DNA cross-link repair protein pso2/snm1, putative [Ricinus
           communis] gi|223530792|gb|EEF32657.1| DNA cross-link
           repair protein pso2/snm1, putative [Ricinus communis]
          Length = 543

 Score =  372 bits (956), Expect = e-101
 Identities = 172/252 (68%), Positives = 209/252 (82%)
 Frame = -2

Query: 756 MPIEMPIGLPFSVDTWSPSSDRKRHHFLTHAHKDHSSGITAHASYPIYSTHVTKTIVLQQ 577
           MPIEMP GLPFSVDTWSP+S RKRHHFLTHAHKDH SGI AH+SYPIY+TH+TK+++L  
Sbjct: 1   MPIEMPRGLPFSVDTWSPTSKRKRHHFLTHAHKDHCSGILAHSSYPIYATHLTKSLLLLY 60

Query: 576 YPQLDASLFVEIEIGGKVVIEDPDGTFSVSAFDANHCPGAIMFLFEGNFGNILHTGDCRL 397
           +PQL+ SLFV IE+G  +VI+DP G FSV+AFDANHCPGA+MFLFEG+FGNILHTGDCRL
Sbjct: 61  FPQLEDSLFVGIEVGQSLVIDDPYGNFSVTAFDANHCPGAVMFLFEGSFGNILHTGDCRL 120

Query: 396 TPECLQNLPEKYVGEKGREPKCCLDDLFLDCTFGNTFIKFPSKESAIRQVINCIRKHPNA 217
           +PEC+Q LP+KY+ + G+EP+C LD +FLDCTFG    K PSK SA +QVINCI KHP A
Sbjct: 121 SPECIQCLPKKYISKNGKEPRCQLDYVFLDCTFGRFHQKLPSKHSASQQVINCIWKHPAA 180

Query: 216 PVVYLTCDLLAQDKLLVEVSRRFGSKVYVDRINNAECFQALTITAPEVLTEDESSRFQIF 37
            +VYLTCDLL Q++LL  VSR FGSK+YV++  N ECF ALT+T P++LT+D SSRF +F
Sbjct: 181 AIVYLTCDLLGQEELLANVSRTFGSKIYVEKAANPECFHALTLTVPQILTQDPSSRFHVF 240

Query: 36  EGGFNKFYDRAS 1
             GF   Y+RA+
Sbjct: 241 -NGFPMLYERAA 251


>ref|XP_003528048.1| PREDICTED: 5' exonuclease Apollo-like [Glycine max]
          Length = 553

 Score =  365 bits (937), Expect = 7e-99
 Identities = 175/252 (69%), Positives = 208/252 (82%), Gaps = 1/252 (0%)
 Frame = -2

Query: 756 MPIEMPIGLPFSVDTWSPSSDRKRHHFLTHAHKDHSSGITAHASYPIYSTHVTKTIVLQQ 577
           MPIEMP GLPFSVDTW+PSS  KRH FLTHAHKDHSS IT+H+SYPIYST++TKTI+LQQ
Sbjct: 1   MPIEMPKGLPFSVDTWTPSSS-KRHCFLTHAHKDHSSSITSHSSYPIYSTNLTKTILLQQ 59

Query: 576 YPQLDASLFVEIEIGGKVVIEDPDGT-FSVSAFDANHCPGAIMFLFEGNFGNILHTGDCR 400
           YPQLDASLF+ IE+G  +VI DP    F+VSAFDANHCPGA+MFLFEG FGNILHTGDCR
Sbjct: 60  YPQLDASLFLNIELGQSLVIHDPAAAPFTVSAFDANHCPGAVMFLFEGKFGNILHTGDCR 119

Query: 399 LTPECLQNLPEKYVGEKGREPKCCLDDLFLDCTFGNTFIKFPSKESAIRQVINCIRKHPN 220
           LTPECL NLP+KYVG KG+EP+C LD +FLDCTFGN     PSK SAI+QVINCI KHP+
Sbjct: 120 LTPECLLNLPDKYVGRKGKEPRCPLDCVFLDCTFGNFSQGMPSKHSAIQQVINCIWKHPD 179

Query: 219 APVVYLTCDLLAQDKLLVEVSRRFGSKVYVDRINNAECFQALTITAPEVLTEDESSRFQI 40
           A  VYLTC++L Q+++LV VS  FG+K+YVD+   +ECF+ L +T PE+L ED +SRF +
Sbjct: 180 AQTVYLTCNMLGQEEILVNVSETFGAKIYVDKAKYSECFENLALTVPEILCEDPASRFHL 239

Query: 39  FEGGFNKFYDRA 4
           F+G  N  Y+RA
Sbjct: 240 FDGSRN-LYERA 250