BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00006003
         (1286 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI39565.3| unnamed protein product [Vitis vinifera]              328   1e-87
ref|XP_002282861.1| PREDICTED: DNA polymerase III polC-type-like...   328   1e-87
emb|CAN74413.1| hypothetical protein VITISV_042394 [Vitis vinifera]   298   2e-78
ref|XP_003626171.1| DNA polymerase III polC-type [Medicago trunc...   286   1e-74
ref|XP_003554625.1| PREDICTED: DNA polymerase III polC-type-like...   278   2e-72

>emb|CBI39565.3| unnamed protein product [Vitis vinifera]
          Length = 332

 Score =  328 bits (842), Expect = 1e-87
 Identities = 181/354 (51%), Positives = 237/354 (66%), Gaps = 13/354 (3%)
 Frame = +1

Query: 154  MCFSVLQNTRCRMRSAKVNPILQPISYASIWFDNFCSIGNNLGRSFSLKPVGYYTNRHFR 333
            MCFS+LQ  RCR+ +            AS W ++F S+G+    S S K +G +TN    
Sbjct: 1    MCFSILQVPRCRIHTL-----------ASFWRESFHSLGSTCRSSSSFKLLGSHTN---- 45

Query: 334  EGHETGSCINETKKLSGRLKQQLTTKVHIRKNNIESSQPGTVRPDELLDGA--------- 486
             G E G+    T++        +TTK   R    +SS+   +R  E++DG          
Sbjct: 46   -GLEGGNSRRWTRR-------PITTKSEGRNKYTQSSKRSNIR-HEIVDGTVSTSTKLIV 96

Query: 487  ---KVSKFEGFKYCDVHQKI-ECGDIQRSVTIIVFDIETTGLGRENERIIEIALRDLSGG 654
               ++S+ +  +YC+V +K+ E  D+ + VT+IVFD ETTGL R N+RIIEI L+DL GG
Sbjct: 97   DKLEISESQRIQYCEVQEKVTENKDLAKLVTVIVFDTETTGLSRANDRIIEIGLQDLGGG 156

Query: 655  ENSTFQTLVNPERKVPNAHVHGIESSMVNRPDVPRFKDLIPILRHYVESRQIPGAPILWV 834
            ENSTFQTLVNPER VPN HVHGI + MVNRPDVPR+KDLIPIL  YVESRQ PG  ILWV
Sbjct: 157  ENSTFQTLVNPERIVPNPHVHGITTYMVNRPDVPRWKDLIPILLQYVESRQKPGGLILWV 216

Query: 835  SHNARTFDVPFLINEFSRCSEEIPSDWLFLDTLALARELAKLEGTENLSGKSMEALRDYY 1014
            +HN R+FDVPFLINEFSRC+ E+P +W FLDTL LAREL K  G++   G S++ALR+YY
Sbjct: 217  AHNGRSFDVPFLINEFSRCNTEVPPNWRFLDTLPLARELIKSAGSDLPPGASLQALREYY 276

Query: 1015 RIPLVGKAHRAMSDANLLSTILQKMTIDLKLTVSSLLERAFKASDVVLKNKKKS 1176
            RIPLVG AHR +SD   LS +LQ +T +LK++V++LL+R+F ASD++   KKK+
Sbjct: 277  RIPLVGPAHRVLSDVYTLSQVLQMLTFNLKVSVANLLDRSFTASDIINPKKKKN 330


>ref|XP_002282861.1| PREDICTED: DNA polymerase III polC-type-like isoform 2 [Vitis
            vinifera] gi|225450651|ref|XP_002282855.1| PREDICTED: DNA
            polymerase III polC-type-like isoform 1 [Vitis vinifera]
          Length = 337

 Score =  328 bits (842), Expect = 1e-87
 Identities = 181/354 (51%), Positives = 237/354 (66%), Gaps = 13/354 (3%)
 Frame = +1

Query: 154  MCFSVLQNTRCRMRSAKVNPILQPISYASIWFDNFCSIGNNLGRSFSLKPVGYYTNRHFR 333
            MCFS+LQ  RCR+ +            AS W ++F S+G+    S S K +G +TN    
Sbjct: 6    MCFSILQVPRCRIHTL-----------ASFWRESFHSLGSTCRSSSSFKLLGSHTN---- 50

Query: 334  EGHETGSCINETKKLSGRLKQQLTTKVHIRKNNIESSQPGTVRPDELLDGA--------- 486
             G E G+    T++        +TTK   R    +SS+   +R  E++DG          
Sbjct: 51   -GLEGGNSRRWTRR-------PITTKSEGRNKYTQSSKRSNIR-HEIVDGTVSTSTKLIV 101

Query: 487  ---KVSKFEGFKYCDVHQKI-ECGDIQRSVTIIVFDIETTGLGRENERIIEIALRDLSGG 654
               ++S+ +  +YC+V +K+ E  D+ + VT+IVFD ETTGL R N+RIIEI L+DL GG
Sbjct: 102  DKLEISESQRIQYCEVQEKVTENKDLAKLVTVIVFDTETTGLSRANDRIIEIGLQDLGGG 161

Query: 655  ENSTFQTLVNPERKVPNAHVHGIESSMVNRPDVPRFKDLIPILRHYVESRQIPGAPILWV 834
            ENSTFQTLVNPER VPN HVHGI + MVNRPDVPR+KDLIPIL  YVESRQ PG  ILWV
Sbjct: 162  ENSTFQTLVNPERIVPNPHVHGITTYMVNRPDVPRWKDLIPILLQYVESRQKPGGLILWV 221

Query: 835  SHNARTFDVPFLINEFSRCSEEIPSDWLFLDTLALARELAKLEGTENLSGKSMEALRDYY 1014
            +HN R+FDVPFLINEFSRC+ E+P +W FLDTL LAREL K  G++   G S++ALR+YY
Sbjct: 222  AHNGRSFDVPFLINEFSRCNTEVPPNWRFLDTLPLARELIKSAGSDLPPGASLQALREYY 281

Query: 1015 RIPLVGKAHRAMSDANLLSTILQKMTIDLKLTVSSLLERAFKASDVVLKNKKKS 1176
            RIPLVG AHR +SD   LS +LQ +T +LK++V++LL+R+F ASD++   KKK+
Sbjct: 282  RIPLVGPAHRVLSDVYTLSQVLQMLTFNLKVSVANLLDRSFTASDIINPKKKKN 335


>emb|CAN74413.1| hypothetical protein VITISV_042394 [Vitis vinifera]
          Length = 340

 Score =  298 bits (763), Expect = 2e-78
 Identities = 146/236 (61%), Positives = 187/236 (79%), Gaps = 1/236 (0%)
 Frame = +1

Query: 472  LLDGAKVSKFEGFKYCDVHQKI-ECGDIQRSVTIIVFDIETTGLGRENERIIEIALRDLS 648
            ++D  ++S+ +  +YC+V +K+ E  D+ + VT+IVFD ETTGL R N+RIIEI L+DL 
Sbjct: 103  IVDKLEISESQRIQYCEVQEKVTENKDLAKLVTVIVFDTETTGLSRANDRIIEIGLQDLG 162

Query: 649  GGENSTFQTLVNPERKVPNAHVHGIESSMVNRPDVPRFKDLIPILRHYVESRQIPGAPIL 828
            GGENSTFQTLVNPER VPN HVHGI + MVNRPDVPR+KDLIPIL  YVESRQ PG  IL
Sbjct: 163  GGENSTFQTLVNPERIVPNPHVHGITTYMVNRPDVPRWKDLIPILLQYVESRQKPGGLIL 222

Query: 829  WVSHNARTFDVPFLINEFSRCSEEIPSDWLFLDTLALARELAKLEGTENLSGKSMEALRD 1008
            WV+HN R+FDVPFLINEFSRC+ E+P +W F+DTL LARE  K  G++  SG S++ALR+
Sbjct: 223  WVAHNGRSFDVPFLINEFSRCNTEVPPNWRFMDTLPLAREFIKSAGSDLPSGASLQALRE 282

Query: 1009 YYRIPLVGKAHRAMSDANLLSTILQKMTIDLKLTVSSLLERAFKASDVVLKNKKKS 1176
            Y+RIPLVG AHR +SD   LS ILQ +T +LK++V++LL+R+F ASD++   KKK+
Sbjct: 283  YFRIPLVGPAHRVLSDVYTLSQILQMLTFNLKVSVANLLDRSFTASDIINPKKKKN 338


>ref|XP_003626171.1| DNA polymerase III polC-type [Medicago truncatula]
            gi|355501186|gb|AES82389.1| DNA polymerase III polC-type
            [Medicago truncatula]
          Length = 332

 Score =  286 bits (731), Expect = 1e-74
 Identities = 163/342 (47%), Positives = 211/342 (61%), Gaps = 1/342 (0%)
 Frame = +1

Query: 154  MCFSVLQNTRCRMRSAKVNPILQPISYASIWFDNFCSIGNNLGRSFSLKPVGYYTNRHFR 333
            M FS LQ  RCR+ S   N            F +F +I  N      L    Y      R
Sbjct: 6    MIFSFLQVPRCRLHSLANN--------CGQTFHSFSNICENNSSVRLLGSRIYGLQGGHR 57

Query: 334  EGHETGSCINETKKLSGRLKQQLTTKVHIRKNNIESSQPGTVRPDELLDGAKVSKFEGFK 513
            +          T+  +G   +  +TK  I    I +S    V+  +L       +F   +
Sbjct: 58   KKWTRRPITTNTEGSAGTKSR--STKQEILSETISTSSTVNVKKTQL------GQFPEIQ 109

Query: 514  YCDVHQKI-ECGDIQRSVTIIVFDIETTGLGRENERIIEIALRDLSGGENSTFQTLVNPE 690
            YCD+HQ+I +  D+   VT+IVFDIETTG  RENERIIEIALRDL GG NSTFQT VNP+
Sbjct: 110  YCDIHQEIAQNKDLSSLVTVIVFDIETTGFSRENERIIEIALRDLQGGPNSTFQTFVNPQ 169

Query: 691  RKVPNAHVHGIESSMVNRPDVPRFKDLIPILRHYVESRQIPGAPILWVSHNARTFDVPFL 870
            R V N+H+HGI + MV+RP VPR +DL+PIL HYV+SR+ P   +LWV HNAR FDVPF+
Sbjct: 170  RSVYNSHIHGITTQMVSRPGVPRMEDLVPILFHYVKSREKPRGYVLWVGHNARVFDVPFI 229

Query: 871  INEFSRCSEEIPSDWLFLDTLALARELAKLEGTENLSGKSMEALRDYYRIPLVGKAHRAM 1050
            INEF RCS +IP +WLF+DTL LAR+L K EGT+ L   S+++LR +Y I + G AHRAM
Sbjct: 230  INEFRRCSTQIPPNWLFVDTLPLARQLMKSEGTK-LPSVSLDSLRKFYEIKVDGPAHRAM 288

Query: 1051 SDANLLSTILQKMTIDLKLTVSSLLERAFKASDVVLKNKKKS 1176
             D N LS IL K+T DLKLT+S L+E++F  +D++   KKK+
Sbjct: 289  EDVNTLSLILPKLTCDLKLTLSGLVEKSFTEADIINSKKKKN 330


>ref|XP_003554625.1| PREDICTED: DNA polymerase III polC-type-like [Glycine max]
          Length = 329

 Score =  278 bits (712), Expect = 2e-72
 Identities = 165/344 (47%), Positives = 221/344 (64%), Gaps = 3/344 (0%)
 Frame = +1

Query: 154  MCFSVLQNTRCRMRSAKVNPILQPISYASIWFDNFCSIGNNLGRSFSLKPVGYYTNRHFR 333
            M FS+L   R R++S            A+ W + F S     G + +++ +G   +R + 
Sbjct: 6    MIFSLLHVPRFRIQSL-----------ANCWGETFHSFSTTCGNNSNVRLLG---SRIY- 50

Query: 334  EGHETGSCINETKKLSGRLKQQLTTKVHIRKNNIESSQPGTVRPDELLDGAK--VSKFEG 507
             G + G     T+ ++  ++ + +TK    K+ I S    T+  +  ++  K  + K + 
Sbjct: 51   -GLQGGQRKKWTRPITTNIEGKGSTKSKSIKHEILSE---TILANATVNVNKTQLDKSQE 106

Query: 508  FKYCDVHQKIECGDIQRSVTIIVFDIETTGLGRENERIIEIALRDLSGGENSTFQTLVNP 687
             +YCD+ Q+I       S T+IVFDIETTG  RENERIIEIALRDL GGENSTFQTLVNP
Sbjct: 107  IQYCDIQQEIAENKDLSSYTVIVFDIETTGFSRENERIIEIALRDLQGGENSTFQTLVNP 166

Query: 688  ERKVPNAHVHGIESSMVNRPDVPRFKDLIPILRHYVESRQIPGAPILWVSHNARTFDVPF 867
            + KVPN+H+HGI + MVN+P VPR +DLIPIL  YV SR+ PG  +++V+HNAR FDVPF
Sbjct: 167  QCKVPNSHIHGITTHMVNKPGVPRMEDLIPILLQYVRSREKPGGDVIFVAHNARCFDVPF 226

Query: 868  LINEFSRCSEEIPSDWLFLDTLALARELAKLEGTENLSGKSMEALRDYYRIPLVGKAHRA 1047
            +INE  R S EIP +WLFLDTL LAREL K  GT  LS  S+ ALRD Y I + G AHRA
Sbjct: 227  IINELRRYSVEIPPNWLFLDTLPLARELIKSGGT-TLSSTSLAALRDLYGIKVDGSAHRA 285

Query: 1048 MSDANLLSTILQKMTIDLKLTVSSLLERAFKASDVV-LKNKKKS 1176
            M D N LS IL ++T DLKLT+S L++++F  SD++  KNKKK+
Sbjct: 286  MVDVNALSLILSRLTSDLKLTLSDLVKKSFTESDIINSKNKKKN 329