BLASTX nr result
ID: Coptis25_contig00006003
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis25_contig00006003 (1286 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value emb|CBI39565.3| unnamed protein product [Vitis vinifera] 328 1e-87 ref|XP_002282861.1| PREDICTED: DNA polymerase III polC-type-like... 328 1e-87 emb|CAN74413.1| hypothetical protein VITISV_042394 [Vitis vinifera] 298 2e-78 ref|XP_003626171.1| DNA polymerase III polC-type [Medicago trunc... 286 1e-74 ref|XP_003554625.1| PREDICTED: DNA polymerase III polC-type-like... 278 2e-72 >emb|CBI39565.3| unnamed protein product [Vitis vinifera] Length = 332 Score = 328 bits (842), Expect = 1e-87 Identities = 181/354 (51%), Positives = 237/354 (66%), Gaps = 13/354 (3%) Frame = +1 Query: 154 MCFSVLQNTRCRMRSAKVNPILQPISYASIWFDNFCSIGNNLGRSFSLKPVGYYTNRHFR 333 MCFS+LQ RCR+ + AS W ++F S+G+ S S K +G +TN Sbjct: 1 MCFSILQVPRCRIHTL-----------ASFWRESFHSLGSTCRSSSSFKLLGSHTN---- 45 Query: 334 EGHETGSCINETKKLSGRLKQQLTTKVHIRKNNIESSQPGTVRPDELLDGA--------- 486 G E G+ T++ +TTK R +SS+ +R E++DG Sbjct: 46 -GLEGGNSRRWTRR-------PITTKSEGRNKYTQSSKRSNIR-HEIVDGTVSTSTKLIV 96 Query: 487 ---KVSKFEGFKYCDVHQKI-ECGDIQRSVTIIVFDIETTGLGRENERIIEIALRDLSGG 654 ++S+ + +YC+V +K+ E D+ + VT+IVFD ETTGL R N+RIIEI L+DL GG Sbjct: 97 DKLEISESQRIQYCEVQEKVTENKDLAKLVTVIVFDTETTGLSRANDRIIEIGLQDLGGG 156 Query: 655 ENSTFQTLVNPERKVPNAHVHGIESSMVNRPDVPRFKDLIPILRHYVESRQIPGAPILWV 834 ENSTFQTLVNPER VPN HVHGI + MVNRPDVPR+KDLIPIL YVESRQ PG ILWV Sbjct: 157 ENSTFQTLVNPERIVPNPHVHGITTYMVNRPDVPRWKDLIPILLQYVESRQKPGGLILWV 216 Query: 835 SHNARTFDVPFLINEFSRCSEEIPSDWLFLDTLALARELAKLEGTENLSGKSMEALRDYY 1014 +HN R+FDVPFLINEFSRC+ E+P +W FLDTL LAREL K G++ G S++ALR+YY Sbjct: 217 AHNGRSFDVPFLINEFSRCNTEVPPNWRFLDTLPLARELIKSAGSDLPPGASLQALREYY 276 Query: 1015 RIPLVGKAHRAMSDANLLSTILQKMTIDLKLTVSSLLERAFKASDVVLKNKKKS 1176 RIPLVG AHR +SD LS +LQ +T +LK++V++LL+R+F ASD++ KKK+ Sbjct: 277 RIPLVGPAHRVLSDVYTLSQVLQMLTFNLKVSVANLLDRSFTASDIINPKKKKN 330 >ref|XP_002282861.1| PREDICTED: DNA polymerase III polC-type-like isoform 2 [Vitis vinifera] gi|225450651|ref|XP_002282855.1| PREDICTED: DNA polymerase III polC-type-like isoform 1 [Vitis vinifera] Length = 337 Score = 328 bits (842), Expect = 1e-87 Identities = 181/354 (51%), Positives = 237/354 (66%), Gaps = 13/354 (3%) Frame = +1 Query: 154 MCFSVLQNTRCRMRSAKVNPILQPISYASIWFDNFCSIGNNLGRSFSLKPVGYYTNRHFR 333 MCFS+LQ RCR+ + AS W ++F S+G+ S S K +G +TN Sbjct: 6 MCFSILQVPRCRIHTL-----------ASFWRESFHSLGSTCRSSSSFKLLGSHTN---- 50 Query: 334 EGHETGSCINETKKLSGRLKQQLTTKVHIRKNNIESSQPGTVRPDELLDGA--------- 486 G E G+ T++ +TTK R +SS+ +R E++DG Sbjct: 51 -GLEGGNSRRWTRR-------PITTKSEGRNKYTQSSKRSNIR-HEIVDGTVSTSTKLIV 101 Query: 487 ---KVSKFEGFKYCDVHQKI-ECGDIQRSVTIIVFDIETTGLGRENERIIEIALRDLSGG 654 ++S+ + +YC+V +K+ E D+ + VT+IVFD ETTGL R N+RIIEI L+DL GG Sbjct: 102 DKLEISESQRIQYCEVQEKVTENKDLAKLVTVIVFDTETTGLSRANDRIIEIGLQDLGGG 161 Query: 655 ENSTFQTLVNPERKVPNAHVHGIESSMVNRPDVPRFKDLIPILRHYVESRQIPGAPILWV 834 ENSTFQTLVNPER VPN HVHGI + MVNRPDVPR+KDLIPIL YVESRQ PG ILWV Sbjct: 162 ENSTFQTLVNPERIVPNPHVHGITTYMVNRPDVPRWKDLIPILLQYVESRQKPGGLILWV 221 Query: 835 SHNARTFDVPFLINEFSRCSEEIPSDWLFLDTLALARELAKLEGTENLSGKSMEALRDYY 1014 +HN R+FDVPFLINEFSRC+ E+P +W FLDTL LAREL K G++ G S++ALR+YY Sbjct: 222 AHNGRSFDVPFLINEFSRCNTEVPPNWRFLDTLPLARELIKSAGSDLPPGASLQALREYY 281 Query: 1015 RIPLVGKAHRAMSDANLLSTILQKMTIDLKLTVSSLLERAFKASDVVLKNKKKS 1176 RIPLVG AHR +SD LS +LQ +T +LK++V++LL+R+F ASD++ KKK+ Sbjct: 282 RIPLVGPAHRVLSDVYTLSQVLQMLTFNLKVSVANLLDRSFTASDIINPKKKKN 335 >emb|CAN74413.1| hypothetical protein VITISV_042394 [Vitis vinifera] Length = 340 Score = 298 bits (763), Expect = 2e-78 Identities = 146/236 (61%), Positives = 187/236 (79%), Gaps = 1/236 (0%) Frame = +1 Query: 472 LLDGAKVSKFEGFKYCDVHQKI-ECGDIQRSVTIIVFDIETTGLGRENERIIEIALRDLS 648 ++D ++S+ + +YC+V +K+ E D+ + VT+IVFD ETTGL R N+RIIEI L+DL Sbjct: 103 IVDKLEISESQRIQYCEVQEKVTENKDLAKLVTVIVFDTETTGLSRANDRIIEIGLQDLG 162 Query: 649 GGENSTFQTLVNPERKVPNAHVHGIESSMVNRPDVPRFKDLIPILRHYVESRQIPGAPIL 828 GGENSTFQTLVNPER VPN HVHGI + MVNRPDVPR+KDLIPIL YVESRQ PG IL Sbjct: 163 GGENSTFQTLVNPERIVPNPHVHGITTYMVNRPDVPRWKDLIPILLQYVESRQKPGGLIL 222 Query: 829 WVSHNARTFDVPFLINEFSRCSEEIPSDWLFLDTLALARELAKLEGTENLSGKSMEALRD 1008 WV+HN R+FDVPFLINEFSRC+ E+P +W F+DTL LARE K G++ SG S++ALR+ Sbjct: 223 WVAHNGRSFDVPFLINEFSRCNTEVPPNWRFMDTLPLAREFIKSAGSDLPSGASLQALRE 282 Query: 1009 YYRIPLVGKAHRAMSDANLLSTILQKMTIDLKLTVSSLLERAFKASDVVLKNKKKS 1176 Y+RIPLVG AHR +SD LS ILQ +T +LK++V++LL+R+F ASD++ KKK+ Sbjct: 283 YFRIPLVGPAHRVLSDVYTLSQILQMLTFNLKVSVANLLDRSFTASDIINPKKKKN 338 >ref|XP_003626171.1| DNA polymerase III polC-type [Medicago truncatula] gi|355501186|gb|AES82389.1| DNA polymerase III polC-type [Medicago truncatula] Length = 332 Score = 286 bits (731), Expect = 1e-74 Identities = 163/342 (47%), Positives = 211/342 (61%), Gaps = 1/342 (0%) Frame = +1 Query: 154 MCFSVLQNTRCRMRSAKVNPILQPISYASIWFDNFCSIGNNLGRSFSLKPVGYYTNRHFR 333 M FS LQ RCR+ S N F +F +I N L Y R Sbjct: 6 MIFSFLQVPRCRLHSLANN--------CGQTFHSFSNICENNSSVRLLGSRIYGLQGGHR 57 Query: 334 EGHETGSCINETKKLSGRLKQQLTTKVHIRKNNIESSQPGTVRPDELLDGAKVSKFEGFK 513 + T+ +G + +TK I I +S V+ +L +F + Sbjct: 58 KKWTRRPITTNTEGSAGTKSR--STKQEILSETISTSSTVNVKKTQL------GQFPEIQ 109 Query: 514 YCDVHQKI-ECGDIQRSVTIIVFDIETTGLGRENERIIEIALRDLSGGENSTFQTLVNPE 690 YCD+HQ+I + D+ VT+IVFDIETTG RENERIIEIALRDL GG NSTFQT VNP+ Sbjct: 110 YCDIHQEIAQNKDLSSLVTVIVFDIETTGFSRENERIIEIALRDLQGGPNSTFQTFVNPQ 169 Query: 691 RKVPNAHVHGIESSMVNRPDVPRFKDLIPILRHYVESRQIPGAPILWVSHNARTFDVPFL 870 R V N+H+HGI + MV+RP VPR +DL+PIL HYV+SR+ P +LWV HNAR FDVPF+ Sbjct: 170 RSVYNSHIHGITTQMVSRPGVPRMEDLVPILFHYVKSREKPRGYVLWVGHNARVFDVPFI 229 Query: 871 INEFSRCSEEIPSDWLFLDTLALARELAKLEGTENLSGKSMEALRDYYRIPLVGKAHRAM 1050 INEF RCS +IP +WLF+DTL LAR+L K EGT+ L S+++LR +Y I + G AHRAM Sbjct: 230 INEFRRCSTQIPPNWLFVDTLPLARQLMKSEGTK-LPSVSLDSLRKFYEIKVDGPAHRAM 288 Query: 1051 SDANLLSTILQKMTIDLKLTVSSLLERAFKASDVVLKNKKKS 1176 D N LS IL K+T DLKLT+S L+E++F +D++ KKK+ Sbjct: 289 EDVNTLSLILPKLTCDLKLTLSGLVEKSFTEADIINSKKKKN 330 >ref|XP_003554625.1| PREDICTED: DNA polymerase III polC-type-like [Glycine max] Length = 329 Score = 278 bits (712), Expect = 2e-72 Identities = 165/344 (47%), Positives = 221/344 (64%), Gaps = 3/344 (0%) Frame = +1 Query: 154 MCFSVLQNTRCRMRSAKVNPILQPISYASIWFDNFCSIGNNLGRSFSLKPVGYYTNRHFR 333 M FS+L R R++S A+ W + F S G + +++ +G +R + Sbjct: 6 MIFSLLHVPRFRIQSL-----------ANCWGETFHSFSTTCGNNSNVRLLG---SRIY- 50 Query: 334 EGHETGSCINETKKLSGRLKQQLTTKVHIRKNNIESSQPGTVRPDELLDGAK--VSKFEG 507 G + G T+ ++ ++ + +TK K+ I S T+ + ++ K + K + Sbjct: 51 -GLQGGQRKKWTRPITTNIEGKGSTKSKSIKHEILSE---TILANATVNVNKTQLDKSQE 106 Query: 508 FKYCDVHQKIECGDIQRSVTIIVFDIETTGLGRENERIIEIALRDLSGGENSTFQTLVNP 687 +YCD+ Q+I S T+IVFDIETTG RENERIIEIALRDL GGENSTFQTLVNP Sbjct: 107 IQYCDIQQEIAENKDLSSYTVIVFDIETTGFSRENERIIEIALRDLQGGENSTFQTLVNP 166 Query: 688 ERKVPNAHVHGIESSMVNRPDVPRFKDLIPILRHYVESRQIPGAPILWVSHNARTFDVPF 867 + KVPN+H+HGI + MVN+P VPR +DLIPIL YV SR+ PG +++V+HNAR FDVPF Sbjct: 167 QCKVPNSHIHGITTHMVNKPGVPRMEDLIPILLQYVRSREKPGGDVIFVAHNARCFDVPF 226 Query: 868 LINEFSRCSEEIPSDWLFLDTLALARELAKLEGTENLSGKSMEALRDYYRIPLVGKAHRA 1047 +INE R S EIP +WLFLDTL LAREL K GT LS S+ ALRD Y I + G AHRA Sbjct: 227 IINELRRYSVEIPPNWLFLDTLPLARELIKSGGT-TLSSTSLAALRDLYGIKVDGSAHRA 285 Query: 1048 MSDANLLSTILQKMTIDLKLTVSSLLERAFKASDVV-LKNKKKS 1176 M D N LS IL ++T DLKLT+S L++++F SD++ KNKKK+ Sbjct: 286 MVDVNALSLILSRLTSDLKLTLSDLVKKSFTESDIINSKNKKKN 329