BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00005992
         (303 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAF99785.1|AC012463_2 T2E6.4 [Arabidopsis thaliana]                 69   2e-13
gb|AAD15471.1| putative non-LTR retroelement reverse transcripta...    69   6e-13
gb|AAC33226.1| putative non-LTR retroelement reverse transcripta...    67   5e-12
gb|AAF87143.1|AC002423_8 T23E23.16 [Arabidopsis thaliana]              70   8e-12
dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like ...    64   2e-11

>gb|AAF99785.1|AC012463_2 T2E6.4 [Arabidopsis thaliana]
          Length = 740

 Score = 69.3 bits (168), Expect(2) = 2e-13
 Identities = 27/65 (41%), Positives = 43/65 (66%)
 Frame = +2

Query: 2   QLEKICARFLWSGPSLEPKMHHASWGRICHSKDEGGLGITDMYRWNRAAYFGLVFKVASK 181
           ++EK+C+ FLWSGP L PK    +W  +C  K EGGLGI  +   N+ +   L++++ S+
Sbjct: 411 EIEKLCSAFLWSGPELNPKKAKITWTSLCKLKQEGGLGIKSLLEANKVSCLKLIWRLVSR 470

Query: 182 ENSLW 196
           ++SLW
Sbjct: 471 QSSLW 475



 Score = 31.2 bits (69), Expect(2) = 2e-13
 Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = +1

Query: 190 LVVNWVWQQHMKHKMFWTMPIPKDC-SWVWRHVLKAR 297
           L VNWVW   ++   FW+        SW+W+ +LK R
Sbjct: 474 LWVNWVWTYIIRKGSFWSANDRSSLGSWMWKKLLKYR 510


>gb|AAD15471.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1277

 Score = 69.3 bits (168), Expect(2) = 6e-13
 Identities = 27/65 (41%), Positives = 43/65 (66%)
 Frame = +2

Query: 2    QLEKICARFLWSGPSLEPKMHHASWGRICHSKDEGGLGITDMYRWNRAAYFGLVFKVASK 181
            ++EK+C+ FLWSGP L PK    +W  +C  K EGGLGI  +   N+ +   L++++ S+
Sbjct: 980  EIEKLCSAFLWSGPELNPKKAKITWTSLCKLKQEGGLGIKSLLEANKVSCLKLIWRLVSR 1039

Query: 182  ENSLW 196
            ++SLW
Sbjct: 1040 QSSLW 1044



 Score = 29.3 bits (64), Expect(2) = 6e-13
 Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = +1

Query: 190  LVVNWVWQQHMKHKMFWTMPIPKDC-SWVWRHVLKAR 297
            L VNWVW   ++   FW+        SW+W+ +L  R
Sbjct: 1043 LWVNWVWTYIIRKGSFWSANDRSSLGSWMWKKLLNYR 1079


>gb|AAC33226.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1529

 Score = 67.4 bits (163), Expect(2) = 5e-12
 Identities = 28/65 (43%), Positives = 41/65 (63%)
 Frame = +2

Query: 2    QLEKICARFLWSGPSLEPKMHHASWGRICHSKDEGGLGITDMYRWNRAAYFGLVFKVASK 181
            ++EK+C+ FLWSGP L PK    +W  IC  K EGGLGI  +   N+ +   L++++ S 
Sbjct: 1135 EIEKLCSAFLWSGPVLNPKKAKIAWSSICQPKKEGGLGIKSLAEANKVSCLKLIWRLLST 1194

Query: 182  ENSLW 196
            + SLW
Sbjct: 1195 QPSLW 1199



 Score = 28.1 bits (61), Expect(2) = 5e-12
 Identities = 12/38 (31%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = +1

Query: 190  LVVNWVWQQHMKHKMFWTMPIPKDC-SWVWRHVLKARK 300
            L V W+W   ++   FW+        SW+W+ +LK R+
Sbjct: 1198 LWVTWIWTFIIRKGTFWSANERSSLGSWMWKKLLKYRE 1235


>gb|AAF87143.1|AC002423_8 T23E23.16 [Arabidopsis thaliana]
          Length = 653

 Score = 70.5 bits (171), Expect(2) = 8e-12
 Identities = 27/65 (41%), Positives = 40/65 (61%)
 Frame = +2

Query: 2   QLEKICARFLWSGPSLEPKMHHASWGRICHSKDEGGLGITDMYRWNRAAYFGLVFKVASK 181
           +++KIC+ FLWSGP L P+     WG +C  K EGGLG+  +   N  +   L++++ S 
Sbjct: 365 EIDKICSAFLWSGPDLNPRKTRVCWGDVCKPKQEGGLGLRSLKEMNEVSCLKLIWRIVSH 424

Query: 182 ENSLW 196
            NSLW
Sbjct: 425 TNSLW 429



 Score = 24.3 bits (51), Expect(2) = 8e-12
 Identities = 11/31 (35%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
 Frame = +1

Query: 190 LVVNWVWQQHMKHKMFWTMPIPKDC-SWVWR 279
           L V W+ Q  +KH  FW++    +  S +WR
Sbjct: 428 LWVRWIEQYLLKHDTFWSVQTTTNMDSVLWR 458


>dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like protein [Arabidopsis
            thaliana]
          Length = 1223

 Score = 64.3 bits (155), Expect(2) = 2e-11
 Identities = 28/65 (43%), Positives = 37/65 (56%)
 Frame = +2

Query: 2    QLEKICARFLWSGPSLEPKMHHASWGRICHSKDEGGLGITDMYRWNRAAYFGLVFKVASK 181
            +LEK+C+ FLWSG  +       SW  +C  KDEGGLG+  +   N      LV+K+ S 
Sbjct: 838  ELEKMCSAFLWSGTEMNSNKAKISWHMVCKPKDEGGLGLRSLKEANDVCCLKLVWKIVSH 897

Query: 182  ENSLW 196
             NSLW
Sbjct: 898  SNSLW 902



 Score = 28.9 bits (63), Expect(2) = 2e-11
 Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = +1

Query: 190  LVVNWVWQQHMKHKMFWTMP-IPKDCSWVWRHVLKARK 300
            L V WV Q  +++  FW +       SW+W+ +LK R+
Sbjct: 901  LWVKWVDQHLLRNASFWEVKQTVSQGSWIWKKLLKYRE 938