BLASTX nr result
ID: Coptis25_contig00005989
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis25_contig00005989
(541 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002282506.1| PREDICTED: ubiquitin-associated domain-conta... 106 2e-48
ref|XP_002522162.1| conserved hypothetical protein [Ricinus comm... 105 2e-47
ref|XP_004168697.1| PREDICTED: uncharacterized protein LOC101228... 103 2e-45
ref|XP_004141121.1| PREDICTED: ubiquitin-associated domain-conta... 103 2e-45
ref|NP_191233.1| Ubiquitin-associated (UBA) protein [Arabidopsis... 102 2e-44
>ref|XP_002282506.1| PREDICTED: ubiquitin-associated domain-containing protein 2 isoform
1 [Vitis vinifera] gi|297741648|emb|CBI32780.3| unnamed
protein product [Vitis vinifera]
Length = 294
Score = 106 bits (265), Expect(3) = 2e-48
Identities = 48/63 (76%), Positives = 56/63 (88%)
Frame = -2
Query: 189 DPSLNMLASGPSGLIFPSSVPFYFDIPVSTRFHIFGINFSDKSFVYLAGLQLLFSSWKRS 10
+P+LN+L SGP GLIF S VPFYFDIP+STR+ +FGI F+DKSF+YLAGLQLL SSWKRS
Sbjct: 112 EPTLNLLTSGPYGLIFSSFVPFYFDIPISTRYRVFGIQFTDKSFIYLAGLQLLLSSWKRS 171
Query: 9 ILP 1
ILP
Sbjct: 172 ILP 174
Score = 88.2 bits (217), Expect(3) = 2e-48
Identities = 39/53 (73%), Positives = 47/53 (88%)
Frame = -1
Query: 538 GVRGSSCKLGLSYQDIFRRLRIWRLFASVFAFSSTPALMFGLYLLYYFRVFER 380
G++G KLGLSYQD+F++L++W+L SVFAFSSTP LMFGLYLLYYFRVFER
Sbjct: 29 GIQGRPNKLGLSYQDVFKKLQLWKLIVSVFAFSSTPELMFGLYLLYYFRVFER 81
Score = 43.9 bits (102), Expect(3) = 2e-48
Identities = 19/31 (61%), Positives = 25/31 (80%)
Frame = -3
Query: 275 SNKYLAFILFSVVVSSLFEAIALAFFKDPIL 183
SNKY FI+FS++VS LFE +AL+ FK+P L
Sbjct: 85 SNKYSVFIMFSIIVSLLFEILALSLFKEPTL 115
>ref|XP_002522162.1| conserved hypothetical protein [Ricinus communis]
gi|223538600|gb|EEF40203.1| conserved hypothetical
protein [Ricinus communis]
Length = 289
Score = 105 bits (263), Expect(3) = 2e-47
Identities = 48/63 (76%), Positives = 55/63 (87%)
Frame = -2
Query: 189 DPSLNMLASGPSGLIFPSSVPFYFDIPVSTRFHIFGINFSDKSFVYLAGLQLLFSSWKRS 10
DP+ N+L SGP G+IF S VPF+FDIPVSTRF +FG+ FSDKSFVYLAGLQLL SSWKRS
Sbjct: 110 DPTANLLTSGPYGVIFASFVPFFFDIPVSTRFRVFGVRFSDKSFVYLAGLQLLLSSWKRS 169
Query: 9 ILP 1
+LP
Sbjct: 170 VLP 172
Score = 89.7 bits (221), Expect(3) = 2e-47
Identities = 42/53 (79%), Positives = 47/53 (88%)
Frame = -1
Query: 538 GVRGSSCKLGLSYQDIFRRLRIWRLFASVFAFSSTPALMFGLYLLYYFRVFER 380
G++G KLGLSYQDIF +LRIW+L ASVFAFSSTP L+FGLYLLYYFRVFER
Sbjct: 27 GIQGGFRKLGLSYQDIFGKLRIWKLIASVFAFSSTPELLFGLYLLYYFRVFER 79
Score = 40.0 bits (92), Expect(3) = 2e-47
Identities = 17/29 (58%), Positives = 21/29 (72%)
Frame = -3
Query: 275 SNKYLAFILFSVVVSSLFEAIALAFFKDP 189
SNKY FILFS+ +S +FE +AL KDP
Sbjct: 83 SNKYSVFILFSIAISLVFEVLALGLLKDP 111
>ref|XP_004168697.1| PREDICTED: uncharacterized protein LOC101228515 [Cucumis sativus]
Length = 291
Score = 103 bits (258), Expect(3) = 2e-45
Identities = 46/63 (73%), Positives = 55/63 (87%)
Frame = -2
Query: 189 DPSLNMLASGPSGLIFPSSVPFYFDIPVSTRFHIFGINFSDKSFVYLAGLQLLFSSWKRS 10
DP+ N++ SGP GL+F S VPF+FDIPVSTRF +FG+ FSDKSF+YLAGLQLL SSW+RS
Sbjct: 112 DPAANLVTSGPYGLLFASFVPFFFDIPVSTRFRVFGVRFSDKSFIYLAGLQLLLSSWRRS 171
Query: 9 ILP 1
ILP
Sbjct: 172 ILP 174
Score = 85.9 bits (211), Expect(3) = 2e-45
Identities = 39/53 (73%), Positives = 46/53 (86%)
Frame = -1
Query: 538 GVRGSSCKLGLSYQDIFRRLRIWRLFASVFAFSSTPALMFGLYLLYYFRVFER 380
G++G S KLGLSYQD+ +LR+W+L SVFAFSSTP LMFGL+LLYYFRVFER
Sbjct: 29 GIQGRSIKLGLSYQDVIVKLRLWKLVMSVFAFSSTPELMFGLFLLYYFRVFER 81
Score = 38.9 bits (89), Expect(3) = 2e-45
Identities = 17/29 (58%), Positives = 21/29 (72%)
Frame = -3
Query: 275 SNKYLAFILFSVVVSSLFEAIALAFFKDP 189
SNKY FILFS+ S LFE +A++ KDP
Sbjct: 85 SNKYSVFILFSITSSLLFEVLAISLLKDP 113
>ref|XP_004141121.1| PREDICTED: ubiquitin-associated domain-containing protein 2-like
[Cucumis sativus]
Length = 291
Score = 103 bits (258), Expect(3) = 2e-45
Identities = 46/63 (73%), Positives = 55/63 (87%)
Frame = -2
Query: 189 DPSLNMLASGPSGLIFPSSVPFYFDIPVSTRFHIFGINFSDKSFVYLAGLQLLFSSWKRS 10
DP+ N++ SGP GL+F S VPF+FDIPVSTRF +FG+ FSDKSF+YLAGLQLL SSW+RS
Sbjct: 112 DPAANLVTSGPYGLLFASFVPFFFDIPVSTRFRVFGVRFSDKSFIYLAGLQLLLSSWRRS 171
Query: 9 ILP 1
ILP
Sbjct: 172 ILP 174
Score = 85.9 bits (211), Expect(3) = 2e-45
Identities = 39/53 (73%), Positives = 46/53 (86%)
Frame = -1
Query: 538 GVRGSSCKLGLSYQDIFRRLRIWRLFASVFAFSSTPALMFGLYLLYYFRVFER 380
G++G S KLGLSYQD+ +LR+W+L SVFAFSSTP LMFGL+LLYYFRVFER
Sbjct: 29 GIQGRSIKLGLSYQDVIVKLRLWKLVMSVFAFSSTPELMFGLFLLYYFRVFER 81
Score = 38.9 bits (89), Expect(3) = 2e-45
Identities = 17/29 (58%), Positives = 21/29 (72%)
Frame = -3
Query: 275 SNKYLAFILFSVVVSSLFEAIALAFFKDP 189
SNKY FILFS+ S LFE +A++ KDP
Sbjct: 85 SNKYSVFILFSITSSLLFEVLAISLLKDP 113
>ref|NP_191233.1| Ubiquitin-associated (UBA) protein [Arabidopsis thaliana]
gi|9662993|emb|CAC00737.1| putative protein [Arabidopsis
thaliana] gi|21553945|gb|AAM63026.1| unknown
[Arabidopsis thaliana] gi|28950711|gb|AAO63279.1|
At3g56740 [Arabidopsis thaliana]
gi|110735889|dbj|BAE99920.1| hypothetical protein
[Arabidopsis thaliana] gi|332646039|gb|AEE79560.1|
Ubiquitin-associated (UBA) protein [Arabidopsis
thaliana]
Length = 293
Score = 102 bits (254), Expect(3) = 2e-44
Identities = 46/63 (73%), Positives = 53/63 (84%)
Frame = -2
Query: 189 DPSLNMLASGPSGLIFPSSVPFYFDIPVSTRFHIFGINFSDKSFVYLAGLQLLFSSWKRS 10
D + N+L SGP GLIF S +PFY DIPVSTRF +FG+NFSDKSF+YLAG+QLL SSWKRS
Sbjct: 112 DTTANLLTSGPYGLIFASFIPFYLDIPVSTRFRVFGVNFSDKSFIYLAGVQLLLSSWKRS 171
Query: 9 ILP 1
I P
Sbjct: 172 IFP 174
Score = 89.4 bits (220), Expect(3) = 2e-44
Identities = 41/53 (77%), Positives = 45/53 (84%)
Frame = -1
Query: 538 GVRGSSCKLGLSYQDIFRRLRIWRLFASVFAFSSTPALMFGLYLLYYFRVFER 380
G++G S KLGLSYQDIF + RIW+L S FAFSSTP LMFGLYLLYYFRVFER
Sbjct: 29 GIQGRSSKLGLSYQDIFEKFRIWKLIMSTFAFSSTPELMFGLYLLYYFRVFER 81
Score = 33.5 bits (75), Expect(3) = 2e-44
Identities = 17/28 (60%), Positives = 18/28 (64%)
Frame = -3
Query: 275 SNKYLAFILFSVVVSSLFEAIALAFFKD 192
SNKY FILFS VS L E I L+ KD
Sbjct: 85 SNKYSVFILFSGTVSLLLEVILLSLLKD 112