BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00005900
         (1609 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004146126.1| PREDICTED: uncharacterized protein LOC101212...   230   7e-58
ref|XP_002527543.1| 60S ribosomal protein L24, mitochondrial pre...   229   2e-57
ref|XP_003588460.1| 50S ribosomal protein L28 [Medicago truncatu...   229   2e-57
ref|XP_002867301.1| ribosomal protein L28 family protein [Arabid...   224   4e-56
ref|XP_002273919.1| PREDICTED: 60S ribosomal protein L24, mitoch...   223   9e-56

>ref|XP_004146126.1| PREDICTED: uncharacterized protein LOC101212331 [Cucumis sativus]
           gi|449528875|ref|XP_004171427.1| PREDICTED:
           uncharacterized LOC101212331 [Cucumis sativus]
          Length = 221

 Score =  230 bits (587), Expect = 7e-58
 Identities = 115/185 (62%), Positives = 142/185 (76%), Gaps = 5/185 (2%)
 Frame = -2

Query: 618 VFRKMAKKVGEENFAPGVKESVKKFIPENHKIVMGRAKRGLYAGRHIQYGNQISEDGGNK 439
           + +K+ KKVGE N APGVK+S+KK IP++ KIVMGRA RG+YAGRHI++GN++SEDGGNK
Sbjct: 8   MMKKILKKVGENNLAPGVKDSLKKCIPDS-KIVMGRANRGIYAGRHIRFGNRVSEDGGNK 66

Query: 438 SRRTWKPNIQDKRLFSYILDRHIQVKVSTHALKCVDKAGGIDEYLLKTPYRKMDTEMGFF 259
           SRR WKPN+Q+KRLFSYILDRHI+VKV+THAL+C+DKAGGIDEYLLKTPY KMDTE+G F
Sbjct: 67  SRRNWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMDTELGLF 126

Query: 258 WKAKMEKMYKEQELRKMDV-----EDEAKFEHGFKDXXXXXXXXXXXXXXKNFTISRKQK 94
           WK+K+E +Y  +EL KM+V     EDE KFE  FK+              + +  S K  
Sbjct: 127 WKSKIETLY--EELGKMEVVFFSPEDEVKFEQRFKELKLSERAARREARRQMYGSSAKLN 184

Query: 93  LIKEG 79
            IKEG
Sbjct: 185 QIKEG 189


>ref|XP_002527543.1| 60S ribosomal protein L24, mitochondrial precursor, putative
           [Ricinus communis] gi|223533093|gb|EEF34852.1| 60S
           ribosomal protein L24, mitochondrial precursor, putative
           [Ricinus communis]
          Length = 211

 Score =  229 bits (584), Expect = 2e-57
 Identities = 106/154 (68%), Positives = 135/154 (87%), Gaps = 3/154 (1%)
 Frame = -2

Query: 618 VFRKMAKKVGEENFAPGVKESVKKFIPENHKIVMGRAKRGLYAGRHIQYGNQISEDGGNK 439
           + + + KKVG+ N +P VKES+KK +P++ K+VMGRAKRG++AGRHIQ+GN++SEDGGNK
Sbjct: 8   MMKNVLKKVGDNNLSPEVKESLKKCMPDS-KVVMGRAKRGIFAGRHIQFGNRVSEDGGNK 66

Query: 438 SRRTWKPNIQDKRLFSYILDRHIQVKVSTHALKCVDKAGGIDEYLLKTPYRKMDTEMGFF 259
           +RRTWKPN+Q+KRLFSYILDRHIQVKV+THAL+C+DKAGGIDEYLLKTPY+KMDT+MG F
Sbjct: 67  TRRTWKPNVQEKRLFSYILDRHIQVKVTTHALRCIDKAGGIDEYLLKTPYQKMDTDMGLF 126

Query: 258 WKAKMEKMYKE---QELRKMDVEDEAKFEHGFKD 166
           WKAK+EK+Y++   +E+     EDEAKFE G KD
Sbjct: 127 WKAKIEKLYEDLGKREIVFFPPEDEAKFEQGLKD 160


>ref|XP_003588460.1| 50S ribosomal protein L28 [Medicago truncatula]
           gi|355477508|gb|AES58711.1| 50S ribosomal protein L28
           [Medicago truncatula]
          Length = 232

 Score =  229 bits (583), Expect = 2e-57
 Identities = 104/154 (67%), Positives = 135/154 (87%), Gaps = 3/154 (1%)
 Frame = -2

Query: 618 VFRKMAKKVGEENFAPGVKESVKKFIPENHKIVMGRAKRGLYAGRHIQYGNQISEDGGNK 439
           + +K+ KKVG++N  P  KES++K++P+N K+VMGRAKRGL+AG+HIQ+GN +SEDGGN+
Sbjct: 8   MMKKVLKKVGDKNLTPRAKESIEKWLPKN-KVVMGRAKRGLFAGKHIQFGNSVSEDGGNR 66

Query: 438 SRRTWKPNIQDKRLFSYILDRHIQVKVSTHALKCVDKAGGIDEYLLKTPYRKMDTEMGFF 259
           +RRTWKPN+QDKRLFSYILDRHI++KV+THAL+C+DKAGGIDEYLLKTPY+KMDTE+G  
Sbjct: 67  TRRTWKPNVQDKRLFSYILDRHIRIKVTTHALRCIDKAGGIDEYLLKTPYQKMDTEIGVL 126

Query: 258 WKAKMEKMYKE---QELRKMDVEDEAKFEHGFKD 166
           WK+K+EK+Y+E   +E+     EDEAKFE GFKD
Sbjct: 127 WKSKIEKLYEELGKKEVVFFSPEDEAKFEQGFKD 160


>ref|XP_002867301.1| ribosomal protein L28 family protein [Arabidopsis lyrata subsp.
           lyrata] gi|297313137|gb|EFH43560.1| ribosomal protein
           L28 family protein [Arabidopsis lyrata subsp. lyrata]
          Length = 212

 Score =  224 bits (572), Expect = 4e-56
 Identities = 105/154 (68%), Positives = 127/154 (82%), Gaps = 3/154 (1%)
 Frame = -2

Query: 618 VFRKMAKKVGEENFAPGVKESVKKFIPENHKIVMGRAKRGLYAGRHIQYGNQISEDGGNK 439
           + +K+ K+VG EN  P +KE +K  +P+  K+VMGRAKRGLYAGRHIQYGN++SEDGGNK
Sbjct: 8   MMKKLVKRVGAENITPELKEKLKACVPDT-KVVMGRAKRGLYAGRHIQYGNRVSEDGGNK 66

Query: 438 SRRTWKPNIQDKRLFSYILDRHIQVKVSTHALKCVDKAGGIDEYLLKTPYRKMDTEMGFF 259
           SRR WKPN+Q+KRLFSYI DRHI+VKV+THAL+C+DKAGGIDEYLLKTPY+KMDTEMG +
Sbjct: 67  SRRCWKPNVQEKRLFSYIFDRHIKVKVTTHALRCIDKAGGIDEYLLKTPYQKMDTEMGLY 126

Query: 258 WKAKMEKMYKE---QELRKMDVEDEAKFEHGFKD 166
           WK K+E+ Y E    E+     EDEAKFE GFKD
Sbjct: 127 WKTKVEQRYAELGQMEVAFFTPEDEAKFEQGFKD 160


>ref|XP_002273919.1| PREDICTED: 60S ribosomal protein L24, mitochondrial [Vitis
           vinifera] gi|302142683|emb|CBI19886.3| unnamed protein
           product [Vitis vinifera]
          Length = 216

 Score =  223 bits (569), Expect = 9e-56
 Identities = 113/193 (58%), Positives = 148/193 (76%), Gaps = 5/193 (2%)
 Frame = -2

Query: 642 MSFKWNAAVFRKMAKKVGEENFAPGVKESVKKFIPENHKIVMGRAKRGLYAGRHIQYGNQ 463
           M+F+ +  + +K+ KK+G+      ++ES+KK++P++ K+VMGRAKRG+YAGRHIQ+GN+
Sbjct: 1   MAFR-SREMMKKIVKKMGDNK----LEESLKKYVPDS-KVVMGRAKRGIYAGRHIQFGNR 54

Query: 462 ISEDGGNKSRRTWKPNIQDKRLFSYILDRHIQVKVSTHALKCVDKAGGIDEYLLKTPYRK 283
           +SEDGGNK+RR+WKPN+Q+KRLFSYILDRHI+VKV+THAL+C+DKAGGIDEYLLKTPY K
Sbjct: 55  VSEDGGNKTRRSWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHK 114

Query: 282 MDTEMGFFWKAKMEKMYKEQELRKMDV-----EDEAKFEHGFKDXXXXXXXXXXXXXXKN 118
           MDTEMG FWKAK+EKMY  +EL +MDV     EDE KFE GFK+                
Sbjct: 115 MDTEMGLFWKAKIEKMY--EELGEMDVVFFSPEDEVKFEQGFKELKLAERAARREARRHI 172

Query: 117 FTISRKQKLIKEG 79
           +  S KQ  ++EG
Sbjct: 173 YGGSGKQVQLEEG 185