BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00005890
         (500 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI19924.3| unnamed protein product [Vitis vinifera]              188   4e-46
ref|XP_002279206.1| PREDICTED: pentatricopeptide repeat-containi...   188   4e-46
ref|XP_004144297.1| PREDICTED: pentatricopeptide repeat-containi...   177   6e-43
ref|XP_002530092.1| pentatricopeptide repeat-containing protein,...   176   2e-42
ref|XP_003522563.1| PREDICTED: pentatricopeptide repeat-containi...   160   8e-38

>emb|CBI19924.3| unnamed protein product [Vitis vinifera]
          Length = 912

 Score =  188 bits (477), Expect = 4e-46
 Identities = 90/142 (63%), Positives = 114/142 (80%), Gaps = 1/142 (0%)
 Frame = -1

Query: 425 DIQALTNS-ILNHIDSGHFKKAVSIVFSKPVPFPFPIYARLFQQCSSERAAIEARIVESH 249
           D +ALT + +L H+++G  +KAVSI+F+ PVPFPF +YARLFQ CSS  A +EAR VESH
Sbjct: 26  DSKALTTTTVLTHLNAGRLRKAVSILFASPVPFPFSLYARLFQICSSNLAIVEARKVESH 85

Query: 248 LVTYNPRPPVFLINRAIETYGKCGCLKDARGLFDDRHQRNGGTWNAMITAYSQNGDGENA 69
           L+T++P PP+FL+NRAIETYGKC CL DAR LF++  QR+GG+WNAMITAY+Q G  E A
Sbjct: 86  LITFSPAPPIFLLNRAIETYGKCSCLDDARELFEEMPQRDGGSWNAMITAYAQGGCAEKA 145

Query: 68  LLVFWEMHRSGVLANEITFASV 3
           L +F  M+R G+ ANEITFASV
Sbjct: 146 LWLFSRMNRLGIWANEITFASV 167



 Score = 56.2 bits (134), Expect = 3e-06
 Identities = 27/104 (25%), Positives = 56/104 (53%)
 Frame = -1

Query: 317 YARLFQQCSSERAAIEARIVESHLVTYNPRPPVFLINRAIETYGKCGCLKDARGLFDDRH 138
           +A +   C++  A   ++ +   +V Y     V L +  ++ YGKC  + DAR +FD+  
Sbjct: 164 FASVLGSCATVLALFLSKQIHGLIVKYGFCWNVILGSSLVDIYGKCRVMSDARRMFDEIE 223

Query: 137 QRNGGTWNAMITAYSQNGDGENALLVFWEMHRSGVLANEITFAS 6
             N  +WN ++  Y + G+ + A+++F++M R+ +     TF++
Sbjct: 224 NPNAISWNVIVRRYLEMGNEKEAVVMFFKMIRANIRPLNFTFSN 267


>ref|XP_002279206.1| PREDICTED: pentatricopeptide repeat-containing protein At3g26540
           [Vitis vinifera]
          Length = 711

 Score =  188 bits (477), Expect = 4e-46
 Identities = 90/142 (63%), Positives = 114/142 (80%), Gaps = 1/142 (0%)
 Frame = -1

Query: 425 DIQALTNS-ILNHIDSGHFKKAVSIVFSKPVPFPFPIYARLFQQCSSERAAIEARIVESH 249
           D +ALT + +L H+++G  +KAVSI+F+ PVPFPF +YARLFQ CSS  A +EAR VESH
Sbjct: 26  DSKALTTTTVLTHLNAGRLRKAVSILFASPVPFPFSLYARLFQICSSNLAIVEARKVESH 85

Query: 248 LVTYNPRPPVFLINRAIETYGKCGCLKDARGLFDDRHQRNGGTWNAMITAYSQNGDGENA 69
           L+T++P PP+FL+NRAIETYGKC CL DAR LF++  QR+GG+WNAMITAY+Q G  E A
Sbjct: 86  LITFSPAPPIFLLNRAIETYGKCSCLDDARELFEEMPQRDGGSWNAMITAYAQGGCAEKA 145

Query: 68  LLVFWEMHRSGVLANEITFASV 3
           L +F  M+R G+ ANEITFASV
Sbjct: 146 LWLFSRMNRLGIWANEITFASV 167



 Score = 56.2 bits (134), Expect = 3e-06
 Identities = 27/104 (25%), Positives = 56/104 (53%)
 Frame = -1

Query: 317 YARLFQQCSSERAAIEARIVESHLVTYNPRPPVFLINRAIETYGKCGCLKDARGLFDDRH 138
           +A +   C++  A   ++ +   +V Y     V L +  ++ YGKC  + DAR +FD+  
Sbjct: 164 FASVLGSCATVLALFLSKQIHGLIVKYGFCWNVILGSSLVDIYGKCRVMSDARRMFDEIE 223

Query: 137 QRNGGTWNAMITAYSQNGDGENALLVFWEMHRSGVLANEITFAS 6
             N  +WN ++  Y + G+ + A+++F++M R+ +     TF++
Sbjct: 224 NPNAISWNVIVRRYLEMGNEKEAVVMFFKMIRANIRPLNFTFSN 267


>ref|XP_004144297.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g26540-like [Cucumis sativus]
           gi|449521874|ref|XP_004167954.1| PREDICTED:
           pentatricopeptide repeat-containing protein
           At3g26540-like [Cucumis sativus]
          Length = 697

 Score =  177 bits (450), Expect = 6e-43
 Identities = 83/141 (58%), Positives = 107/141 (75%)
 Frame = -1

Query: 425 DIQALTNSILNHIDSGHFKKAVSIVFSKPVPFPFPIYARLFQQCSSERAAIEARIVESHL 246
           D  A T++IL +++ G   KAV I+F+ P PFP  +Y RLFQ CSS RA +EAR VESHL
Sbjct: 26  DANAATSTILRYLEEGRLGKAVLILFNSPFPFPHTLYTRLFQLCSSTRALVEARKVESHL 85

Query: 245 VTYNPRPPVFLINRAIETYGKCGCLKDARGLFDDRHQRNGGTWNAMITAYSQNGDGENAL 66
            T+ P PP+FL+NRAIE YGKCGCLKDAR LFD+  QR+GG+WNAMITAY+QNG    AL
Sbjct: 86  ATFCPTPPIFLLNRAIEAYGKCGCLKDARELFDEMPQRDGGSWNAMITAYTQNGYALEAL 145

Query: 65  LVFWEMHRSGVLANEITFASV 3
            ++ ++++SGV A E+T AS+
Sbjct: 146 NLYLDLNKSGVYATEVTLASI 166



 Score = 67.8 bits (164), Expect = 9e-10
 Identities = 31/103 (30%), Positives = 57/103 (55%)
 Frame = -1

Query: 314 ARLFQQCSSERAAIEARIVESHLVTYNPRPPVFLINRAIETYGKCGCLKDARGLFDDRHQ 135
           A + + C S  A   +R +  H+V       V L +  ++ YGKC  + DAR +FD+   
Sbjct: 164 ASILRSCGSVLALHFSRQIHGHIVKCGFVGNVILESSLVDVYGKCRLMNDARSMFDEIQN 223

Query: 134 RNGGTWNAMITAYSQNGDGENALLVFWEMHRSGVLANEITFAS 6
           RN  +WN ++  Y + G+G+ A+ +F++M R  ++ +  TF++
Sbjct: 224 RNDVSWNVIVRRYLEVGNGKEAVSMFFQMFRESLMPSSFTFSN 266


>ref|XP_002530092.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223530403|gb|EEF32291.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 718

 Score =  176 bits (446), Expect = 2e-42
 Identities = 83/139 (59%), Positives = 109/139 (78%)
 Frame = -1

Query: 419 QALTNSILNHIDSGHFKKAVSIVFSKPVPFPFPIYARLFQQCSSERAAIEARIVESHLVT 240
           +ALTN+I+NH+ +   +KAVSI+F+     P+ +YA LFQ CSS  + +EAR +ESHL+T
Sbjct: 26  KALTNTIINHLKANRLQKAVSILFASNSSVPYSLYASLFQLCSSTLSIVEARKIESHLIT 85

Query: 239 YNPRPPVFLINRAIETYGKCGCLKDARGLFDDRHQRNGGTWNAMITAYSQNGDGENALLV 60
           +NP PP+FL+NRAIETYGKC CLKDAR LFD+  QR+GG+WNA+I AY+Q G  E AL +
Sbjct: 86  FNPTPPIFLLNRAIETYGKCECLKDARELFDEMPQRDGGSWNAIIKAYTQCGYAEKALGL 145

Query: 59  FWEMHRSGVLANEITFASV 3
           F +M++ GV ANEITFASV
Sbjct: 146 FKDMNKEGVFANEITFASV 164


>ref|XP_003522563.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g26540-like [Glycine max]
          Length = 698

 Score =  160 bits (406), Expect = 8e-38
 Identities = 77/138 (55%), Positives = 99/138 (71%)
 Frame = -1

Query: 416 ALTNSILNHIDSGHFKKAVSIVFSKPVPFPFPIYARLFQQCSSERAAIEARIVESHLVTY 237
           A+ N+IL ++ +G  +KA SI+F+ P PFPF +YA  F+ CSS RA +EAR VESHL+T+
Sbjct: 32  AVINTILTYLKAGRIRKATSILFAFPKPFPFSLYALFFRLCSSHRAVVEARKVESHLLTF 91

Query: 236 NPRPPVFLINRAIETYGKCGCLKDARGLFDDRHQRNGGTWNAMITAYSQNGDGENALLVF 57
           +P PP FL+NRAIE Y KC CL+DAR LFD+  Q +GG+WNA+ITAYSQ G       +F
Sbjct: 92  SPNPPTFLLNRAIEAYAKCHCLRDARELFDEMPQPDGGSWNALITAYSQLGFPNETFSLF 151

Query: 56  WEMHRSGVLANEITFASV 3
             M RSG    E+TFASV
Sbjct: 152 LCMTRSGFFPTEVTFASV 169