BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00005859
         (318 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002268636.2| PREDICTED: pentatricopeptide repeat-containi...    65   6e-09
ref|XP_004155661.1| PREDICTED: pentatricopeptide repeat-containi...    65   8e-09
emb|CBI41008.3| unnamed protein product [Vitis vinifera]               65   8e-09
ref|YP_002608354.1| succinate dehydrogenase subunit 3 [Vitis vin...    65   8e-09
ref|NP_566445.1| pentatricopeptide repeat-containing protein [Ar...    64   1e-08

>ref|XP_002268636.2| PREDICTED: pentatricopeptide repeat-containing protein At3g13160,
           mitochondrial [Vitis vinifera]
          Length = 383

 Score = 65.1 bits (157), Expect = 6e-09
 Identities = 39/75 (52%), Positives = 50/75 (66%), Gaps = 5/75 (6%)
 Frame = +2

Query: 2   MRFISLYGKPGMFDHALKLFDELPER---TAVKTYNALLNASVVSNKFDETQKLFRE-PS 169
           +R ISLYGK GMFDHA K+FDE+P++    +V ++NALL A V S KFD+ +  F E PS
Sbjct: 98  VRLISLYGKSGMFDHAFKVFDEMPDQKCERSVLSFNALLGACVHSKKFDKVEGFFSELPS 157

Query: 170 -LKKLPDFPSGNDLI 211
            L   PD  S N +I
Sbjct: 158 KLSVEPDLVSYNIVI 172


>ref|XP_004155661.1| PREDICTED: pentatricopeptide repeat-containing protein At1g55890,
           mitochondrial-like [Cucumis sativus]
          Length = 398

 Score = 64.7 bits (156), Expect = 8e-09
 Identities = 32/56 (57%), Positives = 40/56 (71%), Gaps = 3/56 (5%)
 Frame = +2

Query: 5   RFISLYGKPGMFDHALKLFDELPE---RTAVKTYNALLNASVVSNKFDETQKLFRE 163
           R I LYGK GMF HA KLFDELPE      VK++N+LL + V S +FD+ +K+FRE
Sbjct: 114 RLIKLYGKAGMFSHARKLFDELPELNCERTVKSFNSLLASCVKSKEFDQVEKIFRE 169


>emb|CBI41008.3| unnamed protein product [Vitis vinifera]
          Length = 379

 Score = 64.7 bits (156), Expect = 8e-09
 Identities = 36/75 (48%), Positives = 50/75 (66%), Gaps = 5/75 (6%)
 Frame = +2

Query: 2   MRFISLYGKPGMFDHALKLFDELPER---TAVKTYNALLNASVVSNKFDETQKLFRE--P 166
           +R ISLYGK GMFDHA K+FDE+P++    +V ++NALL A V S KFD+    F+E   
Sbjct: 106 VRLISLYGKSGMFDHAFKVFDEMPDQKCERSVLSFNALLGACVHSKKFDKIDGFFQELPG 165

Query: 167 SLKKLPDFPSGNDLI 211
           +L  +PD  S N ++
Sbjct: 166 NLGVVPDVVSYNIIV 180


>ref|YP_002608354.1| succinate dehydrogenase subunit 3 [Vitis vinifera]
           gi|209954150|emb|CAQ77586.1| succinate dehydrogenase
           subunit 3 [Vitis vinifera] gi|239764777|gb|ACS15245.1|
           succinate dehydrogenase subunit 3 [Vitis vinifera]
          Length = 168

 Score = 64.7 bits (156), Expect = 8e-09
 Identities = 39/91 (42%), Positives = 52/91 (57%), Gaps = 2/91 (2%)
 Frame = +2

Query: 50  LKLFD--ELPERTAVKTYNALLNASVVSNKFDETQKLFREPSLKKLPDFPSGNDLITKRK 223
           LK+ D  +L  +  +K +N +  +   + K +E ++     S     D     +LI  RK
Sbjct: 3   LKVTDNQQLDNKEIIKVFNNIKISFNETIKNEEKKEFLITLSDFVCNDLIRRGNLINNRK 62

Query: 224 NILRPLSPHLPIYKPHLTSTFSIFRRISAVF 316
           NILRPLSPHLPIYKP LTSTF I+ RIS  F
Sbjct: 63  NILRPLSPHLPIYKPQLTSTFPIYHRISGAF 93


>ref|NP_566445.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75273726|sp|Q9LK57.1|PP226_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At3g13160, mitochondrial; Flags: Precursor
           gi|10172603|dbj|BAB01407.1| unnamed protein product
           [Arabidopsis thaliana] gi|22531265|gb|AAM97136.1|
           expressed protein [Arabidopsis thaliana]
           gi|27311983|gb|AAO00957.1| expressed protein
           [Arabidopsis thaliana] gi|332641782|gb|AEE75303.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           thaliana]
          Length = 394

 Score = 63.9 bits (154), Expect = 1e-08
 Identities = 37/74 (50%), Positives = 48/74 (64%), Gaps = 5/74 (6%)
 Frame = +2

Query: 5   RFISLYGKPGMFDHALKLFDELPERTAVKT---YNALLNASVVSNKFDETQKLFRE--PS 169
           R I+LYG+ GMF++A K+FDE+PER   +T   +NALLNA V S KFD  + +F+E    
Sbjct: 111 RIINLYGRVGMFENAQKVFDEMPERNCKRTALSFNALLNACVNSKKFDLVEGIFKELPGK 170

Query: 170 LKKLPDFPSGNDLI 211
           L   PD  S N LI
Sbjct: 171 LSIEPDVASYNTLI 184