BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00005819
         (989 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002277910.2| PREDICTED: RNA polymerase II-associated prot...   303   4e-80
emb|CBI39598.3| unnamed protein product [Vitis vinifera]              303   4e-80
ref|XP_002330255.1| predicted protein [Populus trichocarpa] gi|2...   294   2e-77
ref|XP_002318949.1| predicted protein [Populus trichocarpa] gi|2...   288   2e-75
ref|XP_004144746.1| PREDICTED: RNA polymerase II-associated prot...   282   8e-74

>ref|XP_002277910.2| PREDICTED: RNA polymerase II-associated protein 3-like [Vitis
            vinifera]
          Length = 474

 Score =  303 bits (776), Expect = 4e-80
 Identities = 169/321 (52%), Positives = 213/321 (66%), Gaps = 32/321 (9%)
 Frame = +1

Query: 121  HVGTSSLQTSYQDLLTQESSPTAGTEKDLGNECFKQKKYNEAIDCYSRSIALSPTAVAFA 300
            H   S + +S+   +T+ES P A +EK+LGNE FKQ+K+ EAIDCYSRSIAL PTAVA+A
Sbjct: 86   HDAISRISSSF---MTEESLPDAASEKELGNEYFKQRKFKEAIDCYSRSIALLPTAVAYA 142

Query: 301  NRAMAYLKIKRFEEAENDCTEALNLDDRYTKAYSRRATARKELGKLKASLEDSEFALRLE 480
            NRAMAY+KIKRF EAE+DC EALNLDDRY KAYSRRATARKELGK K + ED+EFALRLE
Sbjct: 143  NRAMAYIKIKRFREAEDDCMEALNLDDRYIKAYSRRATARKELGKFKEATEDAEFALRLE 202

Query: 481  PQNQELKKQHAEAKAMYDKELLKKASETMKSSTQGAQRV-------IGNENRIKEVVGKS 639
            PQNQE+KKQ+AEAK++Y+KE+L+KAS  +KSS QG Q+V         +   ++ +   S
Sbjct: 203  PQNQEIKKQYAEAKSLYEKEILQKASGALKSSVQGLQKVGKSVVEVNADTQGVRSISSSS 262

Query: 640  ANAGNRSL------------------------REDSNGSQEGATLKP-IADISKNVHGMK 744
              AG  ++                        R   NG  E A     + D+  N H   
Sbjct: 263  QGAGEAAIQDRFMVPANTSTSMEETENKGTGNRSKENGYLENAVQNSGLEDVMSN-HKTG 321

Query: 745  KQEVRMSVQELXXXXXXXXXXXXGKSITSPKSAYQFEISWRGVSGDVALQARLLKAISPP 924
            ++E++ S+QEL             K+IT+P SAYQFE+SWRG+ GD ALQA  LKAISP 
Sbjct: 322  QREMKSSLQELASRAASRAMVEAAKNITAPNSAYQFEVSWRGLLGDHALQASYLKAISPN 381

Query: 925  SLPHLFKNSLSAALLIDIIKC 987
            +LP +FKN+LSA +LIDIIKC
Sbjct: 382  ALPQIFKNALSAPILIDIIKC 402


>emb|CBI39598.3| unnamed protein product [Vitis vinifera]
          Length = 1097

 Score =  303 bits (776), Expect = 4e-80
 Identities = 169/321 (52%), Positives = 213/321 (66%), Gaps = 32/321 (9%)
 Frame = +1

Query: 121  HVGTSSLQTSYQDLLTQESSPTAGTEKDLGNECFKQKKYNEAIDCYSRSIALSPTAVAFA 300
            H   S + +S+   +T+ES P A +EK+LGNE FKQ+K+ EAIDCYSRSIAL PTAVA+A
Sbjct: 709  HDAISRISSSF---MTEESLPDAASEKELGNEYFKQRKFKEAIDCYSRSIALLPTAVAYA 765

Query: 301  NRAMAYLKIKRFEEAENDCTEALNLDDRYTKAYSRRATARKELGKLKASLEDSEFALRLE 480
            NRAMAY+KIKRF EAE+DC EALNLDDRY KAYSRRATARKELGK K + ED+EFALRLE
Sbjct: 766  NRAMAYIKIKRFREAEDDCMEALNLDDRYIKAYSRRATARKELGKFKEATEDAEFALRLE 825

Query: 481  PQNQELKKQHAEAKAMYDKELLKKASETMKSSTQGAQRV-------IGNENRIKEVVGKS 639
            PQNQE+KKQ+AEAK++Y+KE+L+KAS  +KSS QG Q+V         +   ++ +   S
Sbjct: 826  PQNQEIKKQYAEAKSLYEKEILQKASGALKSSVQGLQKVGKSVVEVNADTQGVRSISSSS 885

Query: 640  ANAGNRSL------------------------REDSNGSQEGATLKP-IADISKNVHGMK 744
              AG  ++                        R   NG  E A     + D+  N H   
Sbjct: 886  QGAGEAAIQDRFMVPANTSTSMEETENKGTGNRSKENGYLENAVQNSGLEDVMSN-HKTG 944

Query: 745  KQEVRMSVQELXXXXXXXXXXXXGKSITSPKSAYQFEISWRGVSGDVALQARLLKAISPP 924
            ++E++ S+QEL             K+IT+P SAYQFE+SWRG+ GD ALQA  LKAISP 
Sbjct: 945  QREMKSSLQELASRAASRAMVEAAKNITAPNSAYQFEVSWRGLLGDHALQASYLKAISPN 1004

Query: 925  SLPHLFKNSLSAALLIDIIKC 987
            +LP +FKN+LSA +LIDIIKC
Sbjct: 1005 ALPQIFKNALSAPILIDIIKC 1025


>ref|XP_002330255.1| predicted protein [Populus trichocarpa] gi|222871711|gb|EEF08842.1|
            predicted protein [Populus trichocarpa]
          Length = 434

 Score =  294 bits (753), Expect = 2e-77
 Identities = 180/367 (49%), Positives = 220/367 (59%), Gaps = 42/367 (11%)
 Frame = +1

Query: 13   KHNRDDPNLYFQGLINNLQDWXXXXXXXXXXXXXXX-------HVGTSSLQTSYQD---- 159
            KH RD   L FQG +N+LQDW                        G S  +TS  D    
Sbjct: 7    KHGRDQA-LDFQGFLNDLQDWELLKDTDKKMKKKSRASDVKIGEDGRSKGKTSAADSSRS 65

Query: 160  --------------------LLTQESSPTAGTEKDLGNECFKQKKYNEAIDCYSRSIALS 279
                                  T E +  A TEK+LGNE FKQKK+NEAI+CYSRSIALS
Sbjct: 66   GSGQYEYSRNFGAINRLSSSFTTDEITVDATTEKELGNEYFKQKKFNEAIECYSRSIALS 125

Query: 280  PTAVAFANRAMAYLKIKR----FEEAENDCTEALNLDDRYTKAYSRRATARKELGKLKAS 447
            PTAVA+ANRAMAYLKIKR    F EAE+DCTEALNLDDRY KAYSRRATARKELGKLK S
Sbjct: 126  PTAVAYANRAMAYLKIKRQFFLFREAEDDCTEALNLDDRYIKAYSRRATARKELGKLKES 185

Query: 448  LEDSEFALRLEPQNQELKKQHAEAKAMYDK-------ELLKKASETMKSSTQGAQRVIGN 606
            +EDSEFAL+LEP NQE+KKQ+AE K++Y+K       E+L+KAS T++SS QG Q+   +
Sbjct: 186  IEDSEFALKLEPNNQEIKKQYAEVKSLYEKASDYLMLEILQKASGTLRSSLQGTQQGGRS 245

Query: 607  ENRIKEVVGKSANAGNRSLREDSNGSQEGATLKPIADISKNVHGMKKQEVRMSVQELXXX 786
            E          A+    ++   S  +Q+        D +K  +  ++QE++ SV EL   
Sbjct: 246  E----------ASVNGHAVHPVSIATQKTGVSASKKDNTKKNNRTRRQELKTSVIELASQ 295

Query: 787  XXXXXXXXXGKSITSPKSAYQFEISWRGVSGDVALQARLLKAISPPSLPHLFKNSLSAAL 966
                      K+IT P SAYQFE+SW+G SGD ALQA LLK  SP +LP +FKN+LS  +
Sbjct: 296  AASRAMAEAAKNITPPNSAYQFEVSWQGFSGDRALQAHLLKVTSPSALPQIFKNALSVPI 355

Query: 967  LIDIIKC 987
            LIDIIKC
Sbjct: 356  LIDIIKC 362


>ref|XP_002318949.1| predicted protein [Populus trichocarpa] gi|222857325|gb|EEE94872.1|
            predicted protein [Populus trichocarpa]
          Length = 471

 Score =  288 bits (736), Expect = 2e-75
 Identities = 182/403 (45%), Positives = 224/403 (55%), Gaps = 75/403 (18%)
 Frame = +1

Query: 4    ARNKHNRDDPNLYFQGLINNLQDWXXXXXXXXXXXXXXXH----VGTSSLQTSYQ----- 156
            A  KH RD   L FQG +N+LQDW                    V  SS    Y      
Sbjct: 4    APGKHGRDQA-LDFQGFLNDLQDWELLKDTDKKMKKKSTGKTSAVDFSSSSGMYDHARNF 62

Query: 157  --------DLLTQESSPTAGTEKDLGNECFKQKKYNEAIDCYSRSIALSPTAVAFANRAM 312
                         ES+  A TEK+LGNE FKQKKY EAI+CYSRSIALSPTAVA+ANRAM
Sbjct: 63   DAINRLSNSFAIDESTVDATTEKELGNEYFKQKKYKEAIECYSRSIALSPTAVAYANRAM 122

Query: 313  AYLKIKRFEEAENDCTEALNLDDRYTKAYSRRATARKELGKLKASLEDSEFALRLEPQNQ 492
            AYLKIKR  +AE+DCTEALNLDDRY KAYSRRAT RKELGKLK S+EDSEFAL+LEP NQ
Sbjct: 123  AYLKIKR--QAEDDCTEALNLDDRYIKAYSRRATTRKELGKLKESIEDSEFALKLEPNNQ 180

Query: 493  ELKKQHAEAKAMYDKE------------------LLKKASETMKSSTQGAQR-------- 594
            E+KKQ+AE K++Y+K                    + KASE+++SS QGAQ+        
Sbjct: 181  EIKKQYAEVKSLYEKASDSTICCYSGCYISLLQFFVTKASESLRSSLQGAQKGGRSEASV 240

Query: 595  --------------------------------VIGNENRIKEVVGKSANAGNRSLREDSN 678
                                            V+     ++E+  KS  AG+RS  +  N
Sbjct: 241  NGHAVHPVSNVTQRTGASASQKDKAKENDGDGVVKKSVYVEEIKNKSTGAGSRSDGQLGN 300

Query: 679  GSQEGATLKPIADISKNVHGMKKQEVRMSVQELXXXXXXXXXXXXGKSITSPKSAYQFEI 858
             S+  A     A+   ++    +QE++ SV+EL             K+IT P SAYQFE+
Sbjct: 301  DSRANAIPSSNAE---SIQVTGRQELKASVKELASQAASRAMAEAAKNITPPNSAYQFEV 357

Query: 859  SWRGVSGDVALQARLLKAISPPSLPHLFKNSLSAALLIDIIKC 987
            SWRG SGD ALQA LLK ++P +LP +FKN+LS  +LIDIIKC
Sbjct: 358  SWRGFSGDRALQAHLLKVVTPSALPQIFKNALSVTILIDIIKC 400


>ref|XP_004144746.1| PREDICTED: RNA polymerase II-associated protein 3-like [Cucumis
            sativus] gi|449517788|ref|XP_004165926.1| PREDICTED: RNA
            polymerase II-associated protein 3-like [Cucumis sativus]
          Length = 458

 Score =  282 bits (722), Expect = 8e-74
 Identities = 176/384 (45%), Positives = 228/384 (59%), Gaps = 59/384 (15%)
 Frame = +1

Query: 13   KHNRDDPNLYFQGLINNLQDWXXXXXXXXXXXXXXX----------------------HV 126
            KH RD   L FQG +N+LQDW                                     + 
Sbjct: 7    KHGRDQL-LDFQGFLNDLQDWEVSFKGKDKKLKPQAIGKEKEDRRQTEKASAADYMKQYD 65

Query: 127  GTSSLQTSYQDLLTQESSPTAGTEKDLGNECFKQKKYNEAIDCYSRSIALSPTAVAFANR 306
              + L  ++Q   T+ S   A +EK+ GNE FKQKK+ EAIDCYSRSIALSPTAVAFANR
Sbjct: 66   AVNRLSRNFQ---TEGSFVDAASEKEQGNEYFKQKKFKEAIDCYSRSIALSPTAVAFANR 122

Query: 307  AMAYLKIKRFEEAENDCTEALNLDDRYTKAYSRRATARKELGKLKASLEDSEFALRLEPQ 486
            AMAYLKI+RF+EAE+DCTEALNLDDRY KAYSRRATARKELGK K +LED+EFA RLEP 
Sbjct: 123  AMAYLKIRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKAKEALEDAEFAQRLEPN 182

Query: 487  NQELKKQHAEAKAMYDKELLKKASETMKSSTQGAQRVIGNEN--RIKEVVGKSA------ 642
            NQE+KKQHA+ +A   K +L+KAS   +SST+  + +  +++  +I+++   S+      
Sbjct: 183  NQEIKKQHADLRAFVGKAILEKASGASRSSTKNKKTLKKSDSDAKIQDIPPVSSSTSRTG 242

Query: 643  ----------NAGNRSLR-----EDSNGSQEGA--TLKPIA------DISKNV------H 735
                      N G  +++     E+S  +  GA  T K +A      D S  +      H
Sbjct: 243  LLAARERVEENGGGNAVKTSARLEESEDTSSGAEITSKKVATNGFHKDSSSYLSALERDH 302

Query: 736  GMKKQEVRMSVQELXXXXXXXXXXXXGKSITSPKSAYQFEISWRGVSGDVALQARLLKAI 915
              +KQE++ SV EL             K+I +P +AYQFE+SWRG SGD ALQARLLK I
Sbjct: 303  LPRKQELKASVYELASQAASRSMVEAAKNIIAPTTAYQFEVSWRGFSGDQALQARLLKTI 362

Query: 916  SPPSLPHLFKNSLSAALLIDIIKC 987
            SP  LP +FK++L+A +LIDI+KC
Sbjct: 363  SPAKLPQIFKDALTAPILIDIVKC 386