BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00005799
         (1327 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002263286.2| PREDICTED: DNA mismatch repair protein Msh3-...   340   e-154
ref|XP_002510803.1| DNA mismatch repair protein MSH3, putative [...   294   e-140
emb|CBI31781.3| unnamed protein product [Vitis vinifera]              328   e-138
ref|XP_002322465.1| predicted protein [Populus trichocarpa] gi|2...   313   e-137
ref|XP_003556101.1| PREDICTED: DNA mismatch repair protein Msh3-...   294   e-127

>ref|XP_002263286.2| PREDICTED: DNA mismatch repair protein Msh3-like [Vitis vinifera]
          Length = 1137

 Score =  340 bits (873), Expect(2) = e-154
 Identities = 171/237 (72%), Positives = 200/237 (84%), Gaps = 4/237 (1%)
 Frame = +2

Query: 2   FSNYLICVVEKGIGVDD-KECGVEGGFDVRIGFVAVEISTGDVVYGEFNDNVMRMALEGV 178
           ++NYL+CVVEKGI V++ K+CGV GGFDVRIG VAVE+STGDVV+GEFNDN MR  LE V
Sbjct: 239 YNNYLVCVVEKGISVENSKDCGVGGGFDVRIGIVAVEVSTGDVVHGEFNDNFMRAGLEAV 298

Query: 179 VLSLSPAEVLLGEPLSKQTEKMLLSYAGPMSSVRVERASRDCFKDGGALAEVTQLYENMG 358
           +LS+SPAE+LLG PLSKQTEK+LL+YAGP S+VRVER SRDCF DGGALAEV  LYEN+ 
Sbjct: 299 ILSMSPAELLLGYPLSKQTEKLLLAYAGPASNVRVERTSRDCFSDGGALAEVMSLYENLS 358

Query: 359 GDSSIYAQEHDIDNTA---WDKHLLGVEGIMTIPGLAVQALALIMRHLKQFGFERIMCLG 529
            +S     +H +DNT     + H L +EGIM++P LAVQALAL +RHLKQFG ERI+C+G
Sbjct: 359 ENSRA---DHQVDNTEVMEQENHCLAIEGIMSMPDLAVQALALTIRHLKQFGLERILCMG 415

Query: 530 ATLRPFYSNMEMTLSANALQQLEVLRNNSDGSETGSLLHAMNHTLTIFGSRLLKHWV 700
           A+ RPF SNMEMTLSANALQQLEVL N+SDGSE+GSLLH MNHTLTIFGSRLL+HWV
Sbjct: 416 ASFRPFSSNMEMTLSANALQQLEVLNNHSDGSESGSLLHTMNHTLTIFGSRLLRHWV 472



 Score =  231 bits (589), Expect(2) = e-154
 Identities = 124/208 (59%), Positives = 156/208 (75%), Gaps = 1/208 (0%)
 Frame = +3

Query: 705  VTHPLCDRTSISARLDAVSEIAESM-TPSTKQNGGGVDNEDECVAHVKPLINDVLCSVLT 881
            V+HPLCD   ISARLDAVSEI  SM +    QN GG+D  D  V +V+P +N +L SVLT
Sbjct: 472  VSHPLCDSNMISARLDAVSEIVMSMGSCKASQNFGGIDEGDSDVTYVQPEVNYLLSSVLT 531

Query: 882  TLGRSTDIQRGITRIFHRTATASEFIAVVCAILYAGKQLQQLQVDHEDSNEELQEKTVHS 1061
            TLGRS DIQRG+TRIFHRTATASEFI+V  AIL+AGKQLQ+L ++ +D +E+ Q ++V S
Sbjct: 532  TLGRSPDIQRGLTRIFHRTATASEFISVTQAILFAGKQLQRLHIEEKDVDEKGQSRSVRS 591

Query: 1062 AXXXXXXXTASSPTVVNHAAKLLSLLNKDAADQKDLQNLFITSDGQFPEVARAQTTVEVA 1241
                    TASS  ++ +AAKLLS LNK+AAD+ DL NLFI S GQFPEVA+A++ V+ A
Sbjct: 592  VLLRKLILTASSSGIIGNAAKLLSTLNKEAADKGDLPNLFIISSGQFPEVAKARSLVQSA 651

Query: 1242 SHKLDSLISMYRKQLGVRNLDFISVSGS 1325
              KLD LI +YRKQL + NL+F+SVSG+
Sbjct: 652  KEKLDLLIGLYRKQLRMNNLEFMSVSGT 679


>ref|XP_002510803.1| DNA mismatch repair protein MSH3, putative [Ricinus communis]
           gi|223549918|gb|EEF51405.1| DNA mismatch repair protein
           MSH3, putative [Ricinus communis]
          Length = 1100

 Score =  294 bits (752), Expect(2) = e-140
 Identities = 156/232 (67%), Positives = 180/232 (77%)
 Frame = +2

Query: 5   SNYLICVVEKGIGVDDKECGVEGGFDVRIGFVAVEISTGDVVYGEFNDNVMRMALEGVVL 184
           SNYL CVV+K I     E GV+ GFD RIGFVAVEISTGDVVYGEFND  +R  LE VVL
Sbjct: 237 SNYLCCVVDKSI-----ENGVDSGFDTRIGFVAVEISTGDVVYGEFNDGFLRSGLEAVVL 291

Query: 185 SLSPAEVLLGEPLSKQTEKMLLSYAGPMSSVRVERASRDCFKDGGALAEVTQLYENMGGD 364
           SL PAE+LLG+PLSKQTEK+LL+YAGP S+VRVERAS   F DGGALAEV  LYENMG  
Sbjct: 292 SLMPAELLLGDPLSKQTEKLLLAYAGPSSNVRVERASGHHFNDGGALAEVILLYENMGEH 351

Query: 365 SSIYAQEHDIDNTAWDKHLLGVEGIMTIPGLAVQALALIMRHLKQFGFERIMCLGATLRP 544
            +   +   ++ T  D   L +EGIM +P LAVQALAL + HLKQFGFE+I+ LGA+ RP
Sbjct: 352 KAEDDENQMMERTHQDISYLAIEGIMNMPDLAVQALALTISHLKQFGFEQILRLGASFRP 411

Query: 545 FYSNMEMTLSANALQQLEVLRNNSDGSETGSLLHAMNHTLTIFGSRLLKHWV 700
             SN+EM LSAN LQQLEVLRNNS+GS++GSL + MNHTLTI GSRLL+HWV
Sbjct: 412 LTSNVEMNLSANTLQQLEVLRNNSNGSDSGSLFNIMNHTLTISGSRLLRHWV 463



 Score =  232 bits (592), Expect(2) = e-140
 Identities = 127/208 (61%), Positives = 154/208 (74%), Gaps = 1/208 (0%)
 Frame = +3

Query: 705  VTHPLCDRTSISARLDAVSEIAESM-TPSTKQNGGGVDNEDECVAHVKPLINDVLCSVLT 881
            VTHPLCDR  ISARLDAVSEIAESM +    QN G  D ED  VA ++P    +L +VL 
Sbjct: 463  VTHPLCDRNMISARLDAVSEIAESMGSYKALQNTGDFDEEDSDVAIIQPDFYHLLSTVLE 522

Query: 882  TLGRSTDIQRGITRIFHRTATASEFIAVVCAILYAGKQLQQLQVDHEDSNEELQEKTVHS 1061
             LGRS DIQRGITRIFHRTATASEFIAV+ AIL AGKQL++LQ++ E +N+ +Q KTV S
Sbjct: 523  MLGRSPDIQRGITRIFHRTATASEFIAVIQAILIAGKQLRRLQIEEEQNNKRVQAKTVRS 582

Query: 1062 AXXXXXXXTASSPTVVNHAAKLLSLLNKDAADQKDLQNLFITSDGQFPEVARAQTTVEVA 1241
                    T SS +VV HAAKLLS LNK+AA+  DL NL + S+GQFPEVA +   V +A
Sbjct: 583  VLLKKLILTVSSSSVVGHAAKLLSTLNKEAAEHGDLTNLIVISNGQFPEVASSNKAVHLA 642

Query: 1242 SHKLDSLISMYRKQLGVRNLDFISVSGS 1325
              KLDSLI++YRKQL +R+L+F+SVSG+
Sbjct: 643  KEKLDSLINLYRKQLKMRSLEFMSVSGT 670


>emb|CBI31781.3| unnamed protein product [Vitis vinifera]
          Length = 903

 Score =  328 bits (842), Expect(2) = e-138
 Identities = 171/257 (66%), Positives = 200/257 (77%), Gaps = 24/257 (9%)
 Frame = +2

Query: 2   FSNYLICVVEKGIGVDD-KECGVEGGFDVRIGFVAVEISTGDVVYGEFNDNVMRMALEGV 178
           ++NYL+CVVEKGI V++ K+CGV GGFDVRIG VAVE+STGDVV+GEFNDN MR  LE V
Sbjct: 107 YNNYLVCVVEKGISVENSKDCGVGGGFDVRIGIVAVEVSTGDVVHGEFNDNFMRAGLEAV 166

Query: 179 VLSLSPAEVLLGEPLSKQTEKMLLSYAGPMSSVRVERASRDCFKDGGALAEVTQLYENMG 358
           +LS+SPAE+LLG PLSKQTEK+LL+YAGP S+VRVER SRDCF DGGALAEV  LYEN+ 
Sbjct: 167 ILSMSPAELLLGYPLSKQTEKLLLAYAGPASNVRVERTSRDCFSDGGALAEVMSLYENLS 226

Query: 359 GDSSIYAQEHDIDNT---AWDKHLLGVE--------------------GIMTIPGLAVQA 469
            +S     +H +DNT     + H L +E                    GIM++P LAVQA
Sbjct: 227 ENS---RADHQVDNTEVMEQENHCLAIEPPTTSYVKFVSVHYGSGIALGIMSMPDLAVQA 283

Query: 470 LALIMRHLKQFGFERIMCLGATLRPFYSNMEMTLSANALQQLEVLRNNSDGSETGSLLHA 649
           LAL +RHLKQFG ERI+C+GA+ RPF SNMEMTLSANALQQLEVL N+SDGSE+GSLLH 
Sbjct: 284 LALTIRHLKQFGLERILCMGASFRPFSSNMEMTLSANALQQLEVLNNHSDGSESGSLLHT 343

Query: 650 MNHTLTIFGSRLLKHWV 700
           MNHTLTIFGSRLL+HWV
Sbjct: 344 MNHTLTIFGSRLLRHWV 360



 Score =  192 bits (487), Expect(2) = e-138
 Identities = 108/207 (52%), Positives = 134/207 (64%)
 Frame = +3

Query: 705  VTHPLCDRTSISARLDAVSEIAESMTPSTKQNGGGVDNEDECVAHVKPLINDVLCSVLTT 884
            V+HPLCD   ISARLDAVSEI  SM                             C     
Sbjct: 360  VSHPLCDSNMISARLDAVSEIVMSMGS---------------------------CKASQN 392

Query: 885  LGRSTDIQRGITRIFHRTATASEFIAVVCAILYAGKQLQQLQVDHEDSNEELQEKTVHSA 1064
             GRS DIQRG+TRIFHRTATASEFI+V  AIL+AGKQLQ+L ++ +D +E+ Q ++V S 
Sbjct: 393  FGRSPDIQRGLTRIFHRTATASEFISVTQAILFAGKQLQRLHIEEKDVDEKGQSRSVRSV 452

Query: 1065 XXXXXXXTASSPTVVNHAAKLLSLLNKDAADQKDLQNLFITSDGQFPEVARAQTTVEVAS 1244
                   TASS  ++ +AAKLLS LNK+AAD+ DL NLFI S GQFPEVA+A++ V+ A 
Sbjct: 453  LLRKLILTASSSGIIGNAAKLLSTLNKEAADKGDLPNLFIISSGQFPEVAKARSLVQSAK 512

Query: 1245 HKLDSLISMYRKQLGVRNLDFISVSGS 1325
             KLD LI +YRKQL + NL+F+SVSG+
Sbjct: 513  EKLDLLIGLYRKQLRMNNLEFMSVSGT 539


>ref|XP_002322465.1| predicted protein [Populus trichocarpa] gi|222869461|gb|EEF06592.1|
           predicted protein [Populus trichocarpa]
          Length = 1092

 Score =  313 bits (802), Expect(2) = e-137
 Identities = 161/233 (69%), Positives = 188/233 (80%), Gaps = 1/233 (0%)
 Frame = +2

Query: 5   SNYLICVVEKGIGVDDKECGVEGG-FDVRIGFVAVEISTGDVVYGEFNDNVMRMALEGVV 181
           SNYL CVVEKG+     +CGVEGG FDVR+G VAVEISTGDVVYGEFND  MR  LE  V
Sbjct: 220 SNYLCCVVEKGL-----DCGVEGGVFDVRVGVVAVEISTGDVVYGEFNDGFMRSGLEAFV 274

Query: 182 LSLSPAEVLLGEPLSKQTEKMLLSYAGPMSSVRVERASRDCFKDGGALAEVTQLYENMGG 361
           LSL+PAE+LLG+PLSKQTEK+LL+Y+GP S+VRVER SRDCF DGGALA+V  LYENM  
Sbjct: 275 LSLAPAELLLGDPLSKQTEKLLLAYSGPSSNVRVERVSRDCFSDGGALADVMSLYENMIE 334

Query: 362 DSSIYAQEHDIDNTAWDKHLLGVEGIMTIPGLAVQALALIMRHLKQFGFERIMCLGATLR 541
           D+    ++   D        L +EG++ +P LAV+ALAL +RHLKQFGF+R++CLGA+ R
Sbjct: 335 DNLGDNEKQMTDAKEQGSCHLAIEGVIKMPDLAVEALALTVRHLKQFGFDRMLCLGASFR 394

Query: 542 PFYSNMEMTLSANALQQLEVLRNNSDGSETGSLLHAMNHTLTIFGSRLLKHWV 700
           PF SNMEM LSAN LQQLEVLRNNSDGSE+GSLLH MNHTLTI+GSRLL+HWV
Sbjct: 395 PFSSNMEMNLSANTLQQLEVLRNNSDGSESGSLLHIMNHTLTIYGSRLLRHWV 447



 Score =  203 bits (517), Expect(2) = e-137
 Identities = 126/235 (53%), Positives = 150/235 (63%), Gaps = 28/235 (11%)
 Frame = +3

Query: 705  VTHPLCDRTSISARLDAVSEIAESMTPST-KQNGGGVDNEDECVAHVKPLINDVLCSVLT 881
            VTHPLCDR  ISARLDAVSEIAE M  S   Q    +D +D  VA V+P +  +L +VLT
Sbjct: 447  VTHPLCDRNMISARLDAVSEIAECMGFSKDSQRVSELDEDDSEVAIVQPDLYYLLSAVLT 506

Query: 882  TLGRSTDIQRGITRIFHRTATASEF---------------------------IAVVCAIL 980
             LGRS DI+RGITRIFHRTATASEF                           IAV  AIL
Sbjct: 507  ALGRSPDIERGITRIFHRTATASEFLLMFLIMYLTYLSSFSSPIAVLVWLWFIAVFQAIL 566

Query: 981  YAGKQLQQLQVDHEDSNEELQEKTVHSAXXXXXXXTASSPTVVNHAAKLLSLLNKDAADQ 1160
             AGKQL++L +  E + + +  KTV S         ASS +VV +AAKLLS LNK+AA+Q
Sbjct: 567  AAGKQLKRLCIQEEHNYDGVGSKTVKSVLLKRLILAASSSSVVGNAAKLLSTLNKEAAEQ 626

Query: 1161 KDLQNLFITSDGQFPEVARAQTTVEVASHKLDSLISMYRKQLGVRNLDFISVSGS 1325
             DL NL I SD QFPEVARA+  V+ A  KLDSLI +YRKQL +RNL+F+SVSG+
Sbjct: 627  GDLTNLIIISDDQFPEVARAREAVQFAKEKLDSLIGLYRKQLQMRNLEFMSVSGT 681


>ref|XP_003556101.1| PREDICTED: DNA mismatch repair protein Msh3-like [Glycine max]
          Length = 1070

 Score =  294 bits (752), Expect(2) = e-127
 Identities = 160/233 (68%), Positives = 185/233 (79%), Gaps = 1/233 (0%)
 Frame = +2

Query: 5   SNYLICVVEKGIGVDDKECGVEGGFDVRIGFVAVEISTGDVVYGEFNDNVMRMALEGVVL 184
           SNYL+CVVEK + +D+K     GG D RIG VAVEISTGDVV+GEF D  +R ALE VVL
Sbjct: 222 SNYLLCVVEKSV-LDEK-----GGVDARIGIVAVEISTGDVVFGEFCDGFLRSALEAVVL 275

Query: 185 SLSPAEVLLGEPLSKQTEKMLLSYAGPMSSVRVERASRDCFKDGGALAEVTQLYENMGGD 364
           +LSPAE+LLG+PLSKQTEK+LL +AGP S+VRVER SRDCF DGGALAEV  LYENM  D
Sbjct: 276 NLSPAELLLGDPLSKQTEKLLLDFAGPASNVRVERFSRDCFIDGGALAEVMTLYENMHID 335

Query: 365 S-SIYAQEHDIDNTAWDKHLLGVEGIMTIPGLAVQALALIMRHLKQFGFERIMCLGATLR 541
           S S   Q +D+      K  L ++ +M +P LAVQALAL +RHLK+FGFERI+C GA++R
Sbjct: 336 SPSDSIQSNDLTENRSQK--LIIKEVMNMPDLAVQALALTIRHLKEFGFERILCSGASIR 393

Query: 542 PFYSNMEMTLSANALQQLEVLRNNSDGSETGSLLHAMNHTLTIFGSRLLKHWV 700
           PF SN EMTLSANALQQLEVL+NNSDGSE GSLL  MN TLTIFGSRLL+HWV
Sbjct: 394 PFSSNTEMTLSANALQQLEVLKNNSDGSEIGSLLQIMNRTLTIFGSRLLRHWV 446



 Score =  191 bits (484), Expect(2) = e-127
 Identities = 110/207 (53%), Positives = 140/207 (67%)
 Frame = +3

Query: 705  VTHPLCDRTSISARLDAVSEIAESMTPSTKQNGGGVDNEDECVAHVKPLINDVLCSVLTT 884
            V+HPLCD+T ISARL AVSEIA+SM             ED  VA V+P +   L  VLTT
Sbjct: 446  VSHPLCDQTLISARLHAVSEIAQSMGSCNSVKNLVRVEEDPDVAIVQPELAYTLSLVLTT 505

Query: 885  LGRSTDIQRGITRIFHRTATASEFIAVVCAILYAGKQLQQLQVDHEDSNEELQEKTVHSA 1064
            LGR+ DIQRGITRIFH TAT SEF+AV+ AIL AGKQLQQL +   ++N      T+   
Sbjct: 506  LGRAPDIQRGITRIFHCTATPSEFVAVIQAILSAGKQLQQLNIGEGNNN------TLRPN 559

Query: 1065 XXXXXXXTASSPTVVNHAAKLLSLLNKDAADQKDLQNLFITSDGQFPEVARAQTTVEVAS 1244
                   TASS +V+ +AAK+LS LN D+AD  DL  L I S+GQFPEV +++   ++A 
Sbjct: 560  LLKKLILTASSDSVIGNAAKMLSSLNIDSADLGDLTKLIIASEGQFPEVCQSREAFKLAV 619

Query: 1245 HKLDSLISMYRKQLGVRNLDFISVSGS 1325
             +LDS+I  YRKQLG++NL+FIS+SG+
Sbjct: 620  EQLDSMIDFYRKQLGMKNLEFISISGT 646