BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00005785
         (1690 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002523609.1| DNA polymerase alpha catalytic subunit, puta...   599   0.0  
emb|CBI21412.3| unnamed protein product [Vitis vinifera]              590   0.0  
ref|XP_002277947.2| PREDICTED: DNA polymerase alpha catalytic su...   590   0.0  
gb|AFD98849.1| DNA polymerase alpha catalytic subunit [Solanum l...   587   0.0  
ref|XP_003611716.1| DNA polymerase [Medicago truncatula] gi|3555...   569   e-178

>ref|XP_002523609.1| DNA polymerase alpha catalytic subunit, putative [Ricinus communis]
            gi|223537171|gb|EEF38804.1| DNA polymerase alpha
            catalytic subunit, putative [Ricinus communis]
          Length = 1526

 Score =  599 bits (1544), Expect(2) = 0.0
 Identities = 284/413 (68%), Positives = 341/413 (82%), Gaps = 1/413 (0%)
 Frame = -1

Query: 1468 KIIERKGLDMVRRDWSLLSKDLGDFCLSQILSGGSCEDVVESIHSALMKVQEEMRNGEIA 1289
            ++IERKGLDMVRRDWSLLSK+LGDFCL+QILSGGSCEDVVESIH++LMKVQEEMRNG++A
Sbjct: 1114 EVIERKGLDMVRRDWSLLSKELGDFCLAQILSGGSCEDVVESIHNSLMKVQEEMRNGQVA 1173

Query: 1288 LEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKEAGYSSGFSAGDTVPYVICCEQXXXXX 1109
            LEKY+ITKTLTKPPEAYPDAKNQPHV VALRLK++GY++G S GDTVPY+ICCEQ     
Sbjct: 1174 LEKYIITKTLTKPPEAYPDAKNQPHVMVALRLKQSGYTTGCSVGDTVPYIICCEQGATPG 1233

Query: 1108 XXXXXTQRARHPDELEKERSNLMVDIEYYLSQEIHPVVSRLCASIEGTSPARLADCLRLD 929
                  QRARHPDEL+K+    M+DI+YYLSQ+IHPVVSRLCASI+GTSP RLADCL LD
Sbjct: 1234 SSSGIAQRARHPDELKKDDGKWMIDIDYYLSQQIHPVVSRLCASIQGTSPERLADCLGLD 1293

Query: 928  SSKFQSKTTDAVSNDPSASLLSAVDDDERYRGCEPLRLSFP-CSCTFECPXXXXXXXXXX 752
            SSKFQ K+++A++NDP++SLL AV+D+ERYR CEPL LS P CS TFECP          
Sbjct: 1294 SSKFQIKSSEAINNDPASSLLFAVNDEERYRSCEPLLLSCPSCSGTFECPAVFGSICTSI 1353

Query: 751  XXXXXXLQAKESSHNFWHTLHCPKCPDDSDGGRITAVMIANQVKRQVDGFISMYYKGIMT 572
                  LQ +ES  NFW  + CPKCP++ D GRI+  M+ANQVKRQ +GF+SMYYKG+MT
Sbjct: 1354 SANPTKLQVEESVSNFWCRMRCPKCPEEGDTGRISPAMLANQVKRQAEGFVSMYYKGLMT 1413

Query: 571  CDDETCNFTSRSLNMRVIGESERGTVCPNYPCCNGHLVRKYTEVDLYKQLSYFCHVLDAV 392
            CDDETC   +RSLN+R+IG+SERGTVCPNYP CNG LVRKYTE +LYKQLS++C++LD V
Sbjct: 1414 CDDETCKHITRSLNLRLIGDSERGTVCPNYPRCNGRLVRKYTEAELYKQLSFYCYLLDTV 1473

Query: 391  RFIEKLDLKLRIPLEKDLARIRLVVDLAASVVQKIRDRCAYGWIQMKDLAISV 233
            R +EK+D   RI LEK + +IR +VDLA S VQKIRDRCAYGW+Q+ DL+++V
Sbjct: 1474 RCMEKMDAGTRISLEKKITKIRPMVDLAVSTVQKIRDRCAYGWVQLSDLSVTV 1526



 Score = 84.0 bits (206), Expect(2) = 0.0
 Identities = 39/43 (90%), Positives = 42/43 (97%)
 Frame = -2

Query: 1689 VNKKYSCLEIDLDGLYKRMLLLKEKKYAAVKVQFKDGTPYELI 1561
            VNKKY CLEIDLDGLYKRMLLLK+KKYAAVK+QFKDGTPYE+I
Sbjct: 1074 VNKKYRCLEIDLDGLYKRMLLLKKKKYAAVKLQFKDGTPYEVI 1116


>emb|CBI21412.3| unnamed protein product [Vitis vinifera]
          Length = 1561

 Score =  590 bits (1521), Expect(2) = 0.0
 Identities = 290/413 (70%), Positives = 340/413 (82%), Gaps = 1/413 (0%)
 Frame = -1

Query: 1468 KIIERKGLDMVRRDWSLLSKDLGDFCLSQILSGGSCEDVVESIHSALMKVQEEMRNGEIA 1289
            ++IERKGLDMVRRDWSLLSK+LGDF LSQILSGGSCEDVVESIH++LMKVQE+MRNGE+A
Sbjct: 1153 EVIERKGLDMVRRDWSLLSKELGDFSLSQILSGGSCEDVVESIHNSLMKVQEDMRNGEVA 1212

Query: 1288 LEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKEAGYSSGFSAGDTVPYVICCEQXXXXX 1109
            LEKY+ITK+LTKPPEAYPD KNQPHVQVALRLK++GYS+G SAGDTVPY+ICCEQ     
Sbjct: 1213 LEKYIITKSLTKPPEAYPD-KNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSG 1271

Query: 1108 XXXXXTQRARHPDELEKERSNLMVDIEYYLSQEIHPVVSRLCASIEGTSPARLADCLRLD 929
                  QRARHPDEL+++    M+DI+YYL+Q+IHPVVSRLCASI+GTSPARLADCL LD
Sbjct: 1272 SSTGIAQRARHPDELKRDNGKWMIDIDYYLAQQIHPVVSRLCASIQGTSPARLADCLGLD 1331

Query: 928  SSKFQSKTTDAVSNDPSASLLSAVDDDERYRGCEPLRLSFP-CSCTFECPXXXXXXXXXX 752
            SSKFQS+ ++A++ND S SLLSA  D+ERYRGCE L LS P C  TF+CP          
Sbjct: 1332 SSKFQSRRSEAINNDFSISLLSA--DEERYRGCEHLILSCPSCFGTFDCPTLFNSVHTSI 1389

Query: 751  XXXXXXLQAKESSHNFWHTLHCPKCPDDSDGGRITAVMIANQVKRQVDGFISMYYKGIMT 572
                  +Q +ES+ NFW  L CPKCP++ D GR++  +IANQVKRQ DGFISMYYKG M 
Sbjct: 1390 TEKSTQVQVEESN-NFWQRLRCPKCPEEGDVGRMSPALIANQVKRQADGFISMYYKGSMM 1448

Query: 571  CDDETCNFTSRSLNMRVIGESERGTVCPNYPCCNGHLVRKYTEVDLYKQLSYFCHVLDAV 392
            CDDETC  T+ SLN+RVIG+SERGTVCPNYP CNG LVRKYTE DLYKQLSYFCHVLD V
Sbjct: 1449 CDDETCKHTTNSLNLRVIGDSERGTVCPNYPRCNGRLVRKYTEADLYKQLSYFCHVLDTV 1508

Query: 391  RFIEKLDLKLRIPLEKDLARIRLVVDLAASVVQKIRDRCAYGWIQMKDLAISV 233
            R IEK+++  RIP+EK+LARIR +V+LAAS  QKIRDRCAYGW+Q+ DL ++V
Sbjct: 1509 RCIEKMEVSTRIPIEKELARIRPLVNLAASTTQKIRDRCAYGWVQLDDLTVTV 1561



 Score = 84.0 bits (206), Expect(2) = 0.0
 Identities = 39/43 (90%), Positives = 42/43 (97%)
 Frame = -2

Query: 1689 VNKKYSCLEIDLDGLYKRMLLLKEKKYAAVKVQFKDGTPYELI 1561
            VNKKY CLEIDLDGLYKRMLLLK+KKYAAVK+QFKDGTPYE+I
Sbjct: 1113 VNKKYRCLEIDLDGLYKRMLLLKKKKYAAVKLQFKDGTPYEVI 1155


>ref|XP_002277947.2| PREDICTED: DNA polymerase alpha catalytic subunit-like [Vitis
            vinifera]
          Length = 1522

 Score =  590 bits (1521), Expect(2) = 0.0
 Identities = 290/413 (70%), Positives = 340/413 (82%), Gaps = 1/413 (0%)
 Frame = -1

Query: 1468 KIIERKGLDMVRRDWSLLSKDLGDFCLSQILSGGSCEDVVESIHSALMKVQEEMRNGEIA 1289
            ++IERKGLDMVRRDWSLLSK+LGDF LSQILSGGSCEDVVESIH++LMKVQE+MRNGE+A
Sbjct: 1114 EVIERKGLDMVRRDWSLLSKELGDFSLSQILSGGSCEDVVESIHNSLMKVQEDMRNGEVA 1173

Query: 1288 LEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKEAGYSSGFSAGDTVPYVICCEQXXXXX 1109
            LEKY+ITK+LTKPPEAYPD KNQPHVQVALRLK++GYS+G SAGDTVPY+ICCEQ     
Sbjct: 1174 LEKYIITKSLTKPPEAYPD-KNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSG 1232

Query: 1108 XXXXXTQRARHPDELEKERSNLMVDIEYYLSQEIHPVVSRLCASIEGTSPARLADCLRLD 929
                  QRARHPDEL+++    M+DI+YYL+Q+IHPVVSRLCASI+GTSPARLADCL LD
Sbjct: 1233 SSTGIAQRARHPDELKRDNGKWMIDIDYYLAQQIHPVVSRLCASIQGTSPARLADCLGLD 1292

Query: 928  SSKFQSKTTDAVSNDPSASLLSAVDDDERYRGCEPLRLSFP-CSCTFECPXXXXXXXXXX 752
            SSKFQS+ ++A++ND S SLLSA  D+ERYRGCE L LS P C  TF+CP          
Sbjct: 1293 SSKFQSRRSEAINNDFSISLLSA--DEERYRGCEHLILSCPSCFGTFDCPTLFNSVHTSI 1350

Query: 751  XXXXXXLQAKESSHNFWHTLHCPKCPDDSDGGRITAVMIANQVKRQVDGFISMYYKGIMT 572
                  +Q +ES+ NFW  L CPKCP++ D GR++  +IANQVKRQ DGFISMYYKG M 
Sbjct: 1351 TEKSTQVQVEESN-NFWQRLRCPKCPEEGDVGRMSPALIANQVKRQADGFISMYYKGSMM 1409

Query: 571  CDDETCNFTSRSLNMRVIGESERGTVCPNYPCCNGHLVRKYTEVDLYKQLSYFCHVLDAV 392
            CDDETC  T+ SLN+RVIG+SERGTVCPNYP CNG LVRKYTE DLYKQLSYFCHVLD V
Sbjct: 1410 CDDETCKHTTNSLNLRVIGDSERGTVCPNYPRCNGRLVRKYTEADLYKQLSYFCHVLDTV 1469

Query: 391  RFIEKLDLKLRIPLEKDLARIRLVVDLAASVVQKIRDRCAYGWIQMKDLAISV 233
            R IEK+++  RIP+EK+LARIR +V+LAAS  QKIRDRCAYGW+Q+ DL ++V
Sbjct: 1470 RCIEKMEVSTRIPIEKELARIRPLVNLAASTTQKIRDRCAYGWVQLDDLTVTV 1522



 Score = 84.0 bits (206), Expect(2) = 0.0
 Identities = 39/43 (90%), Positives = 42/43 (97%)
 Frame = -2

Query: 1689 VNKKYSCLEIDLDGLYKRMLLLKEKKYAAVKVQFKDGTPYELI 1561
            VNKKY CLEIDLDGLYKRMLLLK+KKYAAVK+QFKDGTPYE+I
Sbjct: 1074 VNKKYRCLEIDLDGLYKRMLLLKKKKYAAVKLQFKDGTPYEVI 1116


>gb|AFD98849.1| DNA polymerase alpha catalytic subunit [Solanum lycopersicum]
          Length = 1561

 Score =  587 bits (1512), Expect(2) = 0.0
 Identities = 279/412 (67%), Positives = 340/412 (82%), Gaps = 1/412 (0%)
 Frame = -1

Query: 1468 KIIERKGLDMVRRDWSLLSKDLGDFCLSQILSGGSCEDVVESIHSALMKVQEEMRNGEIA 1289
            ++IE+KGLDMVRRDWSLLSK+LGDFCLSQILSGGSCEDV+ESIH+ALMKVQE+MR G+I 
Sbjct: 1150 EVIEKKGLDMVRRDWSLLSKELGDFCLSQILSGGSCEDVIESIHNALMKVQEQMRTGQIE 1209

Query: 1288 LEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKEAGYSSGFSAGDTVPYVICCEQXXXXX 1109
            LEKYVITK+LTKPPEAYPDAK+QPHV+VALRLK++GY +G SAGDTVPYVICCEQ     
Sbjct: 1210 LEKYVITKSLTKPPEAYPDAKSQPHVEVALRLKKSGYVTGCSAGDTVPYVICCEQGNGST 1269

Query: 1108 XXXXXTQRARHPDELEKERSNLMVDIEYYLSQEIHPVVSRLCASIEGTSPARLADCLRLD 929
                  QRARHPDEL+++  N +VDI+YYL+Q+IHPV+SRLCASI+GTSPARLADCL LD
Sbjct: 1270 TSVGIAQRARHPDELKRDNGNWIVDIDYYLAQQIHPVISRLCASIQGTSPARLADCLGLD 1329

Query: 928  SSKFQSKTTDAVSNDPSASLLSAVDDDERYRGCEPLRLSFP-CSCTFECPXXXXXXXXXX 752
            SSKFQ+K+++AV++DPS +LL   DD+ER+RGCEPL L+ P CSC+FEC           
Sbjct: 1330 SSKFQNKSSEAVNDDPSNALLCVADDEERFRGCEPLTLTCPSCSCSFECAPIFSSICSSI 1389

Query: 751  XXXXXXLQAKESSHNFWHTLHCPKCPDDSDGGRITAVMIANQVKRQVDGFISMYYKGIMT 572
                  LQ  ES+   W    CPKCP++S+ G I++ +IANQVKRQV+GFIS YYKG+M 
Sbjct: 1390 RQNPADLQVGESASKVWERFSCPKCPEESE-GNISSALIANQVKRQVEGFISTYYKGVMM 1448

Query: 571  CDDETCNFTSRSLNMRVIGESERGTVCPNYPCCNGHLVRKYTEVDLYKQLSYFCHVLDAV 392
            CDDETCN+T+RSLN+RVIG+SERGTVCPNYP CNGHL+R+YTE DLYKQL+YFC VLD V
Sbjct: 1449 CDDETCNYTTRSLNLRVIGDSERGTVCPNYPRCNGHLLRQYTEADLYKQLAYFCFVLDTV 1508

Query: 391  RFIEKLDLKLRIPLEKDLARIRLVVDLAASVVQKIRDRCAYGWIQMKDLAIS 236
            R IEK++  +R+ +EK+L RIR VV+ AAS V+K RDRCAY W+Q+KDL +S
Sbjct: 1509 RCIEKVESNMRLQVEKELVRIRPVVEAAASTVEKFRDRCAYSWVQLKDLIVS 1560



 Score = 82.8 bits (203), Expect(2) = 0.0
 Identities = 39/43 (90%), Positives = 41/43 (95%)
 Frame = -2

Query: 1689 VNKKYSCLEIDLDGLYKRMLLLKEKKYAAVKVQFKDGTPYELI 1561
            VNKKY CLEIDLDGLYKRMLLLK+KKYAAVKVQFKDG PYE+I
Sbjct: 1110 VNKKYRCLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGKPYEVI 1152


>ref|XP_003611716.1| DNA polymerase [Medicago truncatula] gi|355513051|gb|AES94674.1| DNA
            polymerase [Medicago truncatula]
          Length = 611

 Score =  569 bits (1467), Expect(2) = e-178
 Identities = 272/413 (65%), Positives = 333/413 (80%), Gaps = 1/413 (0%)
 Frame = -1

Query: 1468 KIIERKGLDMVRRDWSLLSKDLGDFCLSQILSGGSCEDVVESIHSALMKVQEEMRNGEIA 1289
            ++IERKGLD+VRRDWSLL+KDLGDFCL+QILSGGSCEDVVESIH++LMKVQEEMRNG++A
Sbjct: 201  EVIERKGLDIVRRDWSLLAKDLGDFCLTQILSGGSCEDVVESIHNSLMKVQEEMRNGQVA 260

Query: 1288 LEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKEAGYSSGFSAGDTVPYVICCEQXXXXX 1109
            LEKYVITKTLTKPPEAYPDAKNQPHV VA RLK+ GY+SG S GDT+PYVICCEQ     
Sbjct: 261  LEKYVITKTLTKPPEAYPDAKNQPHVLVAQRLKQQGYTSGCSVGDTIPYVICCEQGGSSG 320

Query: 1108 XXXXXTQRARHPDELEKERSNLMVDIEYYLSQEIHPVVSRLCASIEGTSPARLADCLRLD 929
                   RARHPDEL++E+   ++DI+YYLSQ+IHPV+SRLCASI+GTSP RLADCL LD
Sbjct: 321  SATGIALRARHPDELKQEQGTWLIDIDYYLSQQIHPVISRLCASIQGTSPERLADCLGLD 380

Query: 928  SSKFQSKTTDAVSNDPSASLLSAVDDDERYRGCEPLRLSFP-CSCTFECPXXXXXXXXXX 752
            +SKFQ K+++A S+DP++SLL A DD+ERYRGCE L LS P CS  F+CP          
Sbjct: 381  TSKFQHKSSEA-SDDPTSSLLFAGDDEERYRGCESLVLSCPSCSSVFDCPPVFKSICMLG 439

Query: 751  XXXXXXLQAKESSHNFWHTLHCPKCPDDSDGGRITAVMIANQVKRQVDGFISMYYKGIMT 572
                      ES +NFW  L CPKC  ++  GRI+A MIANQVKRQ + F+ MYY+G++ 
Sbjct: 440  NEKPTSSGTDESDYNFWRKLCCPKC-FENGAGRISAAMIANQVKRQAEKFVLMYYRGLLM 498

Query: 571  CDDETCNFTSRSLNMRVIGESERGTVCPNYPCCNGHLVRKYTEVDLYKQLSYFCHVLDAV 392
            CDDETC  T+RS++ R++G+SERGTVCPNYP CNGHL RKYTE DLYKQLSYFCHV D V
Sbjct: 499  CDDETCKHTTRSVSFRLVGDSERGTVCPNYPRCNGHLNRKYTEADLYKQLSYFCHVFDTV 558

Query: 391  RFIEKLDLKLRIPLEKDLARIRLVVDLAASVVQKIRDRCAYGWIQMKDLAISV 233
             +IEK++ K RIP+EK+L +IR +VDLAAS +QKIRDRCA+GW++++DL +++
Sbjct: 559  CYIEKMEAKSRIPIEKELIKIRPIVDLAASTIQKIRDRCAFGWVKLQDLVVAI 611



 Score = 85.1 bits (209), Expect(2) = e-178
 Identities = 40/43 (93%), Positives = 42/43 (97%)
 Frame = -2

Query: 1689 VNKKYSCLEIDLDGLYKRMLLLKEKKYAAVKVQFKDGTPYELI 1561
            VNKKY CLEIDLDGLYKRMLLLK+KKYAAVKVQFKDGTPYE+I
Sbjct: 161  VNKKYRCLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGTPYEVI 203