BLASTX nr result
ID: Coptis25_contig00005773
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis25_contig00005773
(1139 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|ABK22180.1| unknown [Picea sitchensis] 166 2e-84
ref|XP_002277842.1| PREDICTED: polyadenylate-binding protein, cy... 164 6e-84
ref|XP_001775735.1| predicted protein [Physcomitrella patens sub... 166 1e-83
ref|XP_001763710.1| predicted protein [Physcomitrella patens sub... 166 1e-83
ref|XP_002298913.1| predicted protein [Populus trichocarpa] gi|2... 159 2e-82
>gb|ABK22180.1| unknown [Picea sitchensis]
Length = 288
Score = 166 bits (421), Expect(3) = 2e-84
Identities = 78/92 (84%), Positives = 88/92 (95%)
Frame = -2
Query: 667 EDEREMCARTVYCTNIDKEVSHTDVKVFFESICGEVSRLRLLGDHVHSTRIAFVEFVIAE 488
EDEREMCART+YCTNIDK+VS +V++FFES+CGEVSRLRLLGDHVHSTRIAFVEFV+AE
Sbjct: 192 EDEREMCARTIYCTNIDKKVSQVEVRMFFESLCGEVSRLRLLGDHVHSTRIAFVEFVMAE 251
Query: 487 SAIIALNCSGMILGSLPVRVSPSKTPVRPRSP 392
SAI+ALNCSG I+GSLP+RVSPSKTPVRPR P
Sbjct: 252 SAILALNCSGAIVGSLPIRVSPSKTPVRPRIP 283
Score = 139 bits (349), Expect(3) = 2e-84
Identities = 65/69 (94%), Positives = 68/69 (98%)
Frame = -1
Query: 923 VDCRVCGDPHSVLRFAFIEFADEQGARAALSLAGTMLGYYPVRVLPSKTAILPVNPVFLP 744
+DCR+CGDP+SVLRFAFIEFADEQGARAALSLAGTMLGYYPVRVLPSKTAILPVNP FLP
Sbjct: 130 IDCRICGDPNSVLRFAFIEFADEQGARAALSLAGTMLGYYPVRVLPSKTAILPVNPTFLP 189
Query: 743 RSEDEREMC 717
RSEDEREMC
Sbjct: 190 RSEDEREMC 198
Score = 56.2 bits (134), Expect(3) = 2e-84
Identities = 26/31 (83%), Positives = 27/31 (87%)
Frame = -2
Query: 1096 EDSVRRTVYVSDIDQHITEEHLAALFINCGQ 1004
EDSVRRTVYV DID +TEE LAALFINCGQ
Sbjct: 98 EDSVRRTVYVCDIDHQVTEEQLAALFINCGQ 128
Score = 63.5 bits (153), Expect = 9e-08
Identities = 35/90 (38%), Positives = 51/90 (56%)
Frame = -2
Query: 661 EREMCARTVYCTNIDKEVSHTDVKVFFESICGEVSRLRLLGDHVHSTRIAFVEFVIAESA 482
+ + RTVY +ID +V+ + F + CG+V R+ GD R AF+EF + A
Sbjct: 97 QEDSVRRTVYVCDIDHQVTEEQLAALFIN-CGQVIDCRICGDPNSVLRFAFIEFADEQGA 155
Query: 481 IIALNCSGMILGSLPVRVSPSKTPVRPRSP 392
AL+ +G +LG PVRV PSKT + P +P
Sbjct: 156 RAALSLAGTMLGYYPVRVLPSKTAILPVNP 185
>ref|XP_002277842.1| PREDICTED: polyadenylate-binding protein, cytoplasmic and nuclear
[Vitis vinifera] gi|296088694|emb|CBI38144.3| unnamed
protein product [Vitis vinifera]
Length = 292
Score = 164 bits (415), Expect(3) = 6e-84
Identities = 78/97 (80%), Positives = 87/97 (89%)
Frame = -2
Query: 667 EDEREMCARTVYCTNIDKEVSHTDVKVFFESICGEVSRLRLLGDHVHSTRIAFVEFVIAE 488
EDEREMCARTVYCTNIDK+VS +VK FFE CGEVSRLRLLGDHVHSTRIAFVEF +AE
Sbjct: 196 EDEREMCARTVYCTNIDKKVSQAEVKNFFERACGEVSRLRLLGDHVHSTRIAFVEFAMAE 255
Query: 487 SAIIALNCSGMILGSLPVRVSPSKTPVRPRSPRVMLN 377
SAI+ALNCSG++LG+ P+RVSPSKTPVRPR PR L+
Sbjct: 256 SAIVALNCSGLVLGTQPIRVSPSKTPVRPRVPRATLH 292
Score = 137 bits (345), Expect(3) = 6e-84
Identities = 64/69 (92%), Positives = 66/69 (95%)
Frame = -1
Query: 923 VDCRVCGDPHSVLRFAFIEFADEQGARAALSLAGTMLGYYPVRVLPSKTAILPVNPVFLP 744
VDCRVCGDPHSVLRFAF+EFADE GARAAL+L GTMLGYYPVRVLPSKTAILPVNP FLP
Sbjct: 134 VDCRVCGDPHSVLRFAFVEFADEHGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLP 193
Query: 743 RSEDEREMC 717
RSEDEREMC
Sbjct: 194 RSEDEREMC 202
Score = 58.5 bits (140), Expect(3) = 6e-84
Identities = 26/31 (83%), Positives = 29/31 (93%)
Frame = -2
Query: 1096 EDSVRRTVYVSDIDQHITEEHLAALFINCGQ 1004
EDS+RRTVYVSDIDQH+TEE LAALF +CGQ
Sbjct: 102 EDSIRRTVYVSDIDQHVTEERLAALFSSCGQ 132
Score = 66.2 bits (160), Expect = 1e-08
Identities = 38/84 (45%), Positives = 48/84 (57%)
Frame = -2
Query: 643 RTVYCTNIDKEVSHTDVKVFFESICGEVSRLRLLGDHVHSTRIAFVEFVIAESAIIALNC 464
RTVY ++ID+ V+ + F S CG+V R+ GD R AFVEF A ALN
Sbjct: 107 RTVYVSDIDQHVTEERLAALFSS-CGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALNL 165
Query: 463 SGMILGSLPVRVSPSKTPVRPRSP 392
G +LG PVRV PSKT + P +P
Sbjct: 166 GGTMLGYYPVRVLPSKTAILPVNP 189
>ref|XP_001775735.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162672887|gb|EDQ59418.1| predicted protein
[Physcomitrella patens subsp. patens]
Length = 256
Score = 166 bits (421), Expect(3) = 1e-83
Identities = 80/97 (82%), Positives = 90/97 (92%)
Frame = -2
Query: 667 EDEREMCARTVYCTNIDKEVSHTDVKVFFESICGEVSRLRLLGDHVHSTRIAFVEFVIAE 488
EDEREMCART+YCTNIDK+VS DVK+FFES+CGEV+RLRLLGD+ HSTRIAFVEFV+AE
Sbjct: 160 EDEREMCARTIYCTNIDKKVSQADVKLFFESLCGEVARLRLLGDYHHSTRIAFVEFVMAE 219
Query: 487 SAIIALNCSGMILGSLPVRVSPSKTPVRPRSPRVMLN 377
SA+ ALNCSG ILGSLP+RVSPSKTPVRPRSPR L+
Sbjct: 220 SAMAALNCSGAILGSLPIRVSPSKTPVRPRSPRSPLH 256
Score = 135 bits (340), Expect(3) = 1e-83
Identities = 63/69 (91%), Positives = 67/69 (97%)
Frame = -1
Query: 923 VDCRVCGDPHSVLRFAFIEFADEQGARAALSLAGTMLGYYPVRVLPSKTAILPVNPVFLP 744
VDCRVCGDP+SVLRFAF+EF DE+GARAALSLAGTMLGYYPVRVLPSKTAI+PVNP FLP
Sbjct: 98 VDCRVCGDPNSVLRFAFVEFTDEEGARAALSLAGTMLGYYPVRVLPSKTAIVPVNPTFLP 157
Query: 743 RSEDEREMC 717
RSEDEREMC
Sbjct: 158 RSEDEREMC 166
Score = 57.4 bits (137), Expect(3) = 1e-83
Identities = 26/31 (83%), Positives = 28/31 (90%)
Frame = -2
Query: 1096 EDSVRRTVYVSDIDQHITEEHLAALFINCGQ 1004
EDS+RRTVYVSDIDQ +TEE LAALFI CGQ
Sbjct: 66 EDSIRRTVYVSDIDQQVTEEQLAALFITCGQ 96
Score = 65.5 bits (158), Expect = 2e-08
Identities = 37/84 (44%), Positives = 51/84 (60%)
Frame = -2
Query: 643 RTVYCTNIDKEVSHTDVKVFFESICGEVSRLRLLGDHVHSTRIAFVEFVIAESAIIALNC 464
RTVY ++ID++V+ + F + CG+V R+ GD R AFVEF E A AL+
Sbjct: 71 RTVYVSDIDQQVTEEQLAALFIT-CGQVVDCRVCGDPNSVLRFAFVEFTDEEGARAALSL 129
Query: 463 SGMILGSLPVRVSPSKTPVRPRSP 392
+G +LG PVRV PSKT + P +P
Sbjct: 130 AGTMLGYYPVRVLPSKTAIVPVNP 153
>ref|XP_001763710.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162685203|gb|EDQ71600.1| predicted protein
[Physcomitrella patens subsp. patens]
Length = 213
Score = 166 bits (421), Expect(3) = 1e-83
Identities = 80/97 (82%), Positives = 90/97 (92%)
Frame = -2
Query: 667 EDEREMCARTVYCTNIDKEVSHTDVKVFFESICGEVSRLRLLGDHVHSTRIAFVEFVIAE 488
EDEREMCART+YCTNIDK+VS DVK+FFES+CGEV+RLRLLGD+ HSTRIAFVEFV+AE
Sbjct: 117 EDEREMCARTIYCTNIDKKVSQADVKLFFESLCGEVARLRLLGDYHHSTRIAFVEFVMAE 176
Query: 487 SAIIALNCSGMILGSLPVRVSPSKTPVRPRSPRVMLN 377
SA+ ALNCSG ILGSLP+RVSPSKTPVRPRSPR L+
Sbjct: 177 SAMAALNCSGAILGSLPIRVSPSKTPVRPRSPRSPLH 213
Score = 135 bits (340), Expect(3) = 1e-83
Identities = 63/69 (91%), Positives = 67/69 (97%)
Frame = -1
Query: 923 VDCRVCGDPHSVLRFAFIEFADEQGARAALSLAGTMLGYYPVRVLPSKTAILPVNPVFLP 744
VDCRVCGDP+SVLRFAF+EF DE+GARAALSLAGTMLGYYPVRVLPSKTAI+PVNP FLP
Sbjct: 55 VDCRVCGDPNSVLRFAFVEFTDEEGARAALSLAGTMLGYYPVRVLPSKTAIVPVNPTFLP 114
Query: 743 RSEDEREMC 717
RSEDEREMC
Sbjct: 115 RSEDEREMC 123
Score = 57.4 bits (137), Expect(3) = 1e-83
Identities = 26/31 (83%), Positives = 28/31 (90%)
Frame = -2
Query: 1096 EDSVRRTVYVSDIDQHITEEHLAALFINCGQ 1004
EDS+RRTVYVSDIDQ +TEE LAALFI CGQ
Sbjct: 23 EDSIRRTVYVSDIDQQVTEEQLAALFITCGQ 53
Score = 65.5 bits (158), Expect = 2e-08
Identities = 37/84 (44%), Positives = 51/84 (60%)
Frame = -2
Query: 643 RTVYCTNIDKEVSHTDVKVFFESICGEVSRLRLLGDHVHSTRIAFVEFVIAESAIIALNC 464
RTVY ++ID++V+ + F + CG+V R+ GD R AFVEF E A AL+
Sbjct: 28 RTVYVSDIDQQVTEEQLAALFIT-CGQVVDCRVCGDPNSVLRFAFVEFTDEEGARAALSL 86
Query: 463 SGMILGSLPVRVSPSKTPVRPRSP 392
+G +LG PVRV PSKT + P +P
Sbjct: 87 AGTMLGYYPVRVLPSKTAIVPVNP 110
>ref|XP_002298913.1| predicted protein [Populus trichocarpa] gi|222846171|gb|EEE83718.1|
predicted protein [Populus trichocarpa]
Length = 307
Score = 159 bits (401), Expect(3) = 2e-82
Identities = 78/93 (83%), Positives = 83/93 (89%)
Frame = -2
Query: 667 EDEREMCARTVYCTNIDKEVSHTDVKVFFESICGEVSRLRLLGDHVHSTRIAFVEFVIAE 488
EDEREMC RTVYCTNIDK+VS +VK FFESICGEV+RLRLLGD VHSTRIAFVEF +AE
Sbjct: 211 EDEREMCTRTVYCTNIDKKVSQVEVKNFFESICGEVTRLRLLGDQVHSTRIAFVEFAMAE 270
Query: 487 SAIIALNCSGMILGSLPVRVSPSKTPVRPRSPR 389
SAI+ALNCSGM LGS PVRVSPSKTPVRPR R
Sbjct: 271 SAIVALNCSGMALGSQPVRVSPSKTPVRPRVTR 303
Score = 139 bits (350), Expect(3) = 2e-82
Identities = 65/69 (94%), Positives = 67/69 (97%)
Frame = -1
Query: 923 VDCRVCGDPHSVLRFAFIEFADEQGARAALSLAGTMLGYYPVRVLPSKTAILPVNPVFLP 744
VDCRVCGDPHSVLRFAF+EFADEQGARAAL+L GTMLGYYPVRVLPSKTAILPVNP FLP
Sbjct: 149 VDCRVCGDPHSVLRFAFVEFADEQGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLP 208
Query: 743 RSEDEREMC 717
RSEDEREMC
Sbjct: 209 RSEDEREMC 217
Score = 56.6 bits (135), Expect(3) = 2e-82
Identities = 25/31 (80%), Positives = 27/31 (87%)
Frame = -2
Query: 1096 EDSVRRTVYVSDIDQHITEEHLAALFINCGQ 1004
EDS+RRTVYVSDIDQH+TEE LA LF CGQ
Sbjct: 117 EDSIRRTVYVSDIDQHVTEERLAGLFSGCGQ 147
Score = 64.7 bits (156), Expect = 4e-08
Identities = 37/90 (41%), Positives = 50/90 (55%)
Frame = -2
Query: 661 EREMCARTVYCTNIDKEVSHTDVKVFFESICGEVSRLRLLGDHVHSTRIAFVEFVIAESA 482
+ + RTVY ++ID+ V+ + F CG+V R+ GD R AFVEF + A
Sbjct: 116 QEDSIRRTVYVSDIDQHVTEERLAGLFSG-CGQVVDCRVCGDPHSVLRFAFVEFADEQGA 174
Query: 481 IIALNCSGMILGSLPVRVSPSKTPVRPRSP 392
ALN G +LG PVRV PSKT + P +P
Sbjct: 175 RAALNLGGTMLGYYPVRVLPSKTAILPVNP 204