BLASTX nr result
ID: Coptis25_contig00005762
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis25_contig00005762
(1464 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CBI22025.3| unnamed protein product [Vitis vinifera] 250 8e-64
ref|XP_002277494.1| PREDICTED: pentatricopeptide repeat-containi... 250 8e-64
ref|XP_002322810.1| predicted protein [Populus trichocarpa] gi|2... 249 1e-63
ref|XP_004137032.1| PREDICTED: pentatricopeptide repeat-containi... 248 4e-63
ref|XP_002514539.1| pentatricopeptide repeat-containing protein,... 246 1e-62
>emb|CBI22025.3| unnamed protein product [Vitis vinifera]
Length = 489
Score = 250 bits (638), Expect = 8e-64
Identities = 120/193 (62%), Positives = 153/193 (79%)
Frame = -3
Query: 1306 LGGFVQNGDLDSAKILFDEMPERNLATWNAMVGGLIQFEFNEEGMCLFGKMHGMGLFPDK 1127
+ G+ ++GD +A+ +FDEMPERN+ATWNAMV GLIQFEFNEEG+ LF +M+ +G PD+
Sbjct: 125 INGYFRSGDWVTARKMFDEMPERNVATWNAMVAGLIQFEFNEEGLGLFSRMNELGFLPDE 184
Query: 1126 FTLGSVLRGCVGSKEVKLGQQIHGYVMKSGIDFDLVVGSSLAHMYMKYGNMSDGEKVFEG 947
F LGSVLRGC G + + G+Q+HGYV K G +F+LVV SSLAHMYMK G++ +GE++
Sbjct: 185 FALGSVLRGCAGLRALVAGRQVHGYVRKCGFEFNLVVVSSLAHMYMKCGSLGEGERLIRA 244
Query: 946 MHVHNVIACNTIIAGRAGRAQNGCSEGALDQFNLMKLAGLRPDKITFVSVISTCSELATL 767
M NV+A NT+I AGRAQNG E LDQ+N+MK+AG RPDKITFVSVIS+CSELATL
Sbjct: 245 MPSQNVVAWNTLI---AGRAQNGYPEEVLDQYNMMKMAGFRPDKITFVSVISSCSELATL 301
Query: 766 GHGQQVHAQAIKS 728
G GQQ+HA+ IK+
Sbjct: 302 GQGQQIHAEVIKA 314
Score = 86.7 bits (213), Expect = 1e-14
Identities = 59/198 (29%), Positives = 95/198 (47%)
Frame = -3
Query: 1297 FVQNGDLDSAKILFDEMPERNLATWNAMVGGLIQFEFNEEGMCLFGKMHGMGLFPDKFTL 1118
+++ G L + L MP +N+ WN ++ G Q + EE + + M G PDK T
Sbjct: 229 YMKCGSLGEGERLIRAMPSQNVVAWNTLIAGRAQNGYPEEVLDQYNMMKMAGFRPDKITF 288
Query: 1117 GSVLRGCVGSKEVKLGQQIHGYVMKSGIDFDLVVGSSLAHMYMKYGNMSDGEKVFEGMHV 938
SV+ C + GQQIH V+K+G + V SSL MY + G + KVF
Sbjct: 289 VSVISSCSELATLGQGQQIHAEVIKAGASLIVSVISSLISMYSRCGCLEYSLKVFLECEN 348
Query: 937 HNVIACNTIIAGRAGRAQNGCSEGALDQFNLMKLAGLRPDKITFVSVISTCSELATLGHG 758
+V+ +++I A +G A+D FN M+ L + +TF+S++ CS
Sbjct: 349 GDVVCWSSMI---AAYGFHGRGVEAIDLFNQMEQEKLEANDVTFLSLLYACSHCG----- 400
Query: 757 QQVHAQAIKSLRLMMKKW 704
+ + IK LM++K+
Sbjct: 401 --LKEKGIKFFDLMVEKY 416
>ref|XP_002277494.1| PREDICTED: pentatricopeptide repeat-containing protein At2g41080
[Vitis vinifera]
Length = 657
Score = 250 bits (638), Expect = 8e-64
Identities = 120/193 (62%), Positives = 153/193 (79%)
Frame = -3
Query: 1306 LGGFVQNGDLDSAKILFDEMPERNLATWNAMVGGLIQFEFNEEGMCLFGKMHGMGLFPDK 1127
+ G+ ++GD +A+ +FDEMPERN+ATWNAMV GLIQFEFNEEG+ LF +M+ +G PD+
Sbjct: 125 INGYFRSGDWVTARKMFDEMPERNVATWNAMVAGLIQFEFNEEGLGLFSRMNELGFLPDE 184
Query: 1126 FTLGSVLRGCVGSKEVKLGQQIHGYVMKSGIDFDLVVGSSLAHMYMKYGNMSDGEKVFEG 947
F LGSVLRGC G + + G+Q+HGYV K G +F+LVV SSLAHMYMK G++ +GE++
Sbjct: 185 FALGSVLRGCAGLRALVAGRQVHGYVRKCGFEFNLVVVSSLAHMYMKCGSLGEGERLIRA 244
Query: 946 MHVHNVIACNTIIAGRAGRAQNGCSEGALDQFNLMKLAGLRPDKITFVSVISTCSELATL 767
M NV+A NT+I AGRAQNG E LDQ+N+MK+AG RPDKITFVSVIS+CSELATL
Sbjct: 245 MPSQNVVAWNTLI---AGRAQNGYPEEVLDQYNMMKMAGFRPDKITFVSVISSCSELATL 301
Query: 766 GHGQQVHAQAIKS 728
G GQQ+HA+ IK+
Sbjct: 302 GQGQQIHAEVIKA 314
Score = 86.7 bits (213), Expect = 1e-14
Identities = 59/198 (29%), Positives = 95/198 (47%)
Frame = -3
Query: 1297 FVQNGDLDSAKILFDEMPERNLATWNAMVGGLIQFEFNEEGMCLFGKMHGMGLFPDKFTL 1118
+++ G L + L MP +N+ WN ++ G Q + EE + + M G PDK T
Sbjct: 229 YMKCGSLGEGERLIRAMPSQNVVAWNTLIAGRAQNGYPEEVLDQYNMMKMAGFRPDKITF 288
Query: 1117 GSVLRGCVGSKEVKLGQQIHGYVMKSGIDFDLVVGSSLAHMYMKYGNMSDGEKVFEGMHV 938
SV+ C + GQQIH V+K+G + V SSL MY + G + KVF
Sbjct: 289 VSVISSCSELATLGQGQQIHAEVIKAGASLIVSVISSLISMYSRCGCLEYSLKVFLECEN 348
Query: 937 HNVIACNTIIAGRAGRAQNGCSEGALDQFNLMKLAGLRPDKITFVSVISTCSELATLGHG 758
+V+ +++I A +G A+D FN M+ L + +TF+S++ CS
Sbjct: 349 GDVVCWSSMI---AAYGFHGRGVEAIDLFNQMEQEKLEANDVTFLSLLYACSHCG----- 400
Query: 757 QQVHAQAIKSLRLMMKKW 704
+ + IK LM++K+
Sbjct: 401 --LKEKGIKFFDLMVEKY 416
>ref|XP_002322810.1| predicted protein [Populus trichocarpa] gi|222867440|gb|EEF04571.1|
predicted protein [Populus trichocarpa]
Length = 562
Score = 249 bits (637), Expect = 1e-63
Identities = 127/214 (59%), Positives = 160/214 (74%)
Frame = -3
Query: 1369 ANPKREINGRDLISVQWEA*HLGGFVQNGDLDSAKILFDEMPERNLATWNAMVGGLIQFE 1190
A P R I +++ + G VQ+GDLDSA +FDEM ERN+ATWNAMV GLIQFE
Sbjct: 17 AMPMRNIMSHNIL--------INGHVQHGDLDSAIKVFDEMLERNVATWNAMVSGLIQFE 68
Query: 1189 FNEEGMCLFGKMHGMGLFPDKFTLGSVLRGCVGSKEVKLGQQIHGYVMKSGIDFDLVVGS 1010
FNE G+ LF +MH +G PD+FTLGSVLRGC G + G+Q+H YV+K G +F+LVVGS
Sbjct: 69 FNENGLFLFREMHELGFLPDEFTLGSVLRGCAGLRASYAGKQVHAYVLKYGYEFNLVVGS 128
Query: 1009 SLAHMYMKYGNMSDGEKVFEGMHVHNVIACNTIIAGRAGRAQNGCSEGALDQFNLMKLAG 830
SLAHMYMK G++ +GEKV + M + NV+A NT+I AG AQNG EG LD +N+MK++G
Sbjct: 129 SLAHMYMKSGSLGEGEKVIKAMRIRNVVAWNTLI---AGNAQNGHFEGVLDLYNMMKMSG 185
Query: 829 LRPDKITFVSVISTCSELATLGHGQQVHAQAIKS 728
LRPDKIT VSVIS+ +ELATL GQQ+HA+AIK+
Sbjct: 186 LRPDKITLVSVISSSAELATLFQGQQIHAEAIKA 219
Score = 77.4 bits (189), Expect = 9e-12
Identities = 54/173 (31%), Positives = 85/173 (49%), Gaps = 1/173 (0%)
Frame = -3
Query: 1297 FVQNGDLDSAKILFDEMPERNLATWNAMVGGLIQFEFNEEGMCLFGKMHGMGLFPDKFTL 1118
++++G L + + M RN+ WN ++ G Q E + L+ M GL PDK TL
Sbjct: 134 YMKSGSLGEGEKVIKAMRIRNVVAWNTLIAGNAQNGHFEGVLDLYNMMKMSGLRPDKITL 193
Query: 1117 GSVLRGCVGSKEVKLGQQIHGYVMKSGIDFDLVVGSSLAHMYMKYGNMSDGEK-VFEGMH 941
SV+ + GQQIH +K+G + + V SSL MY K G + D K + + H
Sbjct: 194 VSVISSSAELATLFQGQQIHAEAIKAGANSAVAVLSSLISMYSKCGCLEDSMKALLDCEH 253
Query: 940 VHNVIACNTIIAGRAGRAQNGCSEGALDQFNLMKLAGLRPDKITFVSVISTCS 782
+V+ + I A +G E A+ F M+ GL + +TF+S++ CS
Sbjct: 254 PDSVLWSSMI----AAYGFHGRGEEAVHLFEQMEQEGLGGNDVTFLSLLYACS 302
>ref|XP_004137032.1| PREDICTED: pentatricopeptide repeat-containing protein At2g41080-like
[Cucumis sativus] gi|449526872|ref|XP_004170437.1|
PREDICTED: pentatricopeptide repeat-containing protein
At2g41080-like [Cucumis sativus]
Length = 667
Score = 248 bits (632), Expect = 4e-63
Identities = 115/193 (59%), Positives = 153/193 (79%)
Frame = -3
Query: 1306 LGGFVQNGDLDSAKILFDEMPERNLATWNAMVGGLIQFEFNEEGMCLFGKMHGMGLFPDK 1127
+ G++Q GDL+SA+ LFDEM ERN+ATWNAM+ GL QFEFN++ + LF +M+G+G PD+
Sbjct: 135 INGYLQLGDLESAQKLFDEMSERNIATWNAMIAGLTQFEFNKQALSLFKEMYGLGFLPDE 194
Query: 1126 FTLGSVLRGCVGSKEVKLGQQIHGYVMKSGIDFDLVVGSSLAHMYMKYGNMSDGEKVFEG 947
FTLGSVLRGC G + + GQ++H ++K G + VVGSSLAHMY+K G++SDGEK+ +
Sbjct: 195 FTLGSVLRGCAGLRSLLAGQEVHACLLKCGFELSSVVGSSLAHMYIKSGSLSDGEKLIKS 254
Query: 946 MHVHNVIACNTIIAGRAGRAQNGCSEGALDQFNLMKLAGLRPDKITFVSVISTCSELATL 767
M + V+A NT+I AG+AQNGC E L+Q+N+MK+AG RPDKITFVSV+S CSELATL
Sbjct: 255 MPIRTVVAWNTLI---AGKAQNGCPEEVLNQYNMMKMAGFRPDKITFVSVLSACSELATL 311
Query: 766 GHGQQVHAQAIKS 728
G GQQ+HA+ IK+
Sbjct: 312 GQGQQIHAEVIKA 324
Score = 90.9 bits (224), Expect = 8e-16
Identities = 58/193 (30%), Positives = 92/193 (47%)
Frame = -3
Query: 1297 FVQNGDLDSAKILFDEMPERNLATWNAMVGGLIQFEFNEEGMCLFGKMHGMGLFPDKFTL 1118
++++G L + L MP R + WN ++ G Q EE + + M G PDK T
Sbjct: 239 YIKSGSLSDGEKLIKSMPIRTVVAWNTLIAGKAQNGCPEEVLNQYNMMKMAGFRPDKITF 298
Query: 1117 GSVLRGCVGSKEVKLGQQIHGYVMKSGIDFDLVVGSSLAHMYMKYGNMSDGEKVFEGMHV 938
SVL C + GQQIH V+K+G L V SSL MY + G + D K F
Sbjct: 299 VSVLSACSELATLGQGQQIHAEVIKAGASSVLAVVSSLISMYSRSGCLEDSIKAFVDREN 358
Query: 937 HNVIACNTIIAGRAGRAQNGCSEGALDQFNLMKLAGLRPDKITFVSVISTCSELATLGHG 758
+V+ +++I A +G E AL+ F+ M+ + +++TF+S++ CS G
Sbjct: 359 FDVVLWSSMI---AAYGFHGRGEEALELFHQMEDLKMEANEVTFLSLLYACSHSGLKEKG 415
Query: 757 QQVHAQAIKSLRL 719
+ +K +L
Sbjct: 416 TEYFDLMVKKYKL 428
>ref|XP_002514539.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223546143|gb|EEF47645.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 332
Score = 246 bits (627), Expect = 1e-62
Identities = 116/193 (60%), Positives = 153/193 (79%)
Frame = -3
Query: 1306 LGGFVQNGDLDSAKILFDEMPERNLATWNAMVGGLIQFEFNEEGMCLFGKMHGMGLFPDK 1127
+ ++ +G+LDSA+ LFDEMPERN+ATWNA+V GLIQFE NEEG+ LF M+ +G PD+
Sbjct: 30 INAYIHSGELDSARNLFDEMPERNVATWNAVVAGLIQFEINEEGLNLFRDMYELGFLPDE 89
Query: 1126 FTLGSVLRGCVGSKEVKLGQQIHGYVMKSGIDFDLVVGSSLAHMYMKYGNMSDGEKVFEG 947
+TLGSVLRGC G K + G+Q+H YV+K G +F+LVVGSSLAHMYMK G++S+GE+V +
Sbjct: 90 YTLGSVLRGCAGLKSMYAGRQVHCYVVKCGFEFNLVVGSSLAHMYMKSGSLSEGERVIKS 149
Query: 946 MHVHNVIACNTIIAGRAGRAQNGCSEGALDQFNLMKLAGLRPDKITFVSVISTCSELATL 767
M N++A NT+I AG++QNG SE LD +N+M++ G RPDKITF SVIS+CSEL TL
Sbjct: 150 MPSRNIVAWNTLI---AGKSQNGHSEEVLDLYNMMRIMGFRPDKITFASVISSCSELTTL 206
Query: 766 GHGQQVHAQAIKS 728
G GQQ+HA+ IK+
Sbjct: 207 GQGQQIHAEVIKA 219
Score = 100 bits (249), Expect = 1e-18
Identities = 59/184 (32%), Positives = 93/184 (50%)
Frame = -3
Query: 1297 FVQNGDLDSAKILFDEMPERNLATWNAMVGGLIQFEFNEEGMCLFGKMHGMGLFPDKFTL 1118
++++G L + + MP RN+ WN ++ G Q +EE + L+ M MG PDK T
Sbjct: 134 YMKSGSLSEGERVIKSMPSRNIVAWNTLIAGKSQNGHSEEVLDLYNMMRIMGFRPDKITF 193
Query: 1117 GSVLRGCVGSKEVKLGQQIHGYVMKSGIDFDLVVGSSLAHMYMKYGNMSDGEKVFEGMHV 938
SV+ C + GQQIH V+K+G + V SSL MY + G + D KVF
Sbjct: 194 ASVISSCSELTTLGQGQQIHAEVIKAGASSVVAVTSSLISMYSRCGCLEDSVKVFLECKD 253
Query: 937 HNVIACNTIIAGRAGRAQNGCSEGALDQFNLMKLAGLRPDKITFVSVISTCSELATLGHG 758
+VI +++I A +G E A+ F+ M+ L + +TF+S++ CS G
Sbjct: 254 VDVILWSSMI---AAYGFHGRGEEAIKLFHQMEQENLEANDVTFLSLLYACSHCGLKDKG 310
Query: 757 QQVH 746
++H
Sbjct: 311 VEIH 314