BLASTX nr result
ID: Coptis25_contig00005692
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis25_contig00005692
(1463 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002273156.2| PREDICTED: pentatricopeptide repeat-containi... 603 e-170
emb|CBI24939.3| unnamed protein product [Vitis vinifera] 603 e-170
ref|XP_003599420.1| Pentatricopeptide repeat-containing protein ... 570 e-160
ref|XP_002313317.1| predicted protein [Populus trichocarpa] gi|2... 557 e-156
ref|XP_002517779.1| pentatricopeptide repeat-containing protein,... 556 e-156
>ref|XP_002273156.2| PREDICTED: pentatricopeptide repeat-containing protein At3g53170-like
[Vitis vinifera]
Length = 538
Score = 603 bits (1556), Expect = e-170
Identities = 294/447 (65%), Positives = 359/447 (80%), Gaps = 11/447 (2%)
Frame = +1
Query: 142 TNKKTFFYVKASKKQS-----------KKNLSRILTTEAAVQGIERRALSANSTRLWPKS 288
T+ F +V+A K+ S KK+LSRIL TEAA+ GIER+A S + LWPK+
Sbjct: 35 TSNPPFLFVRAGKRSSGSSQNGLQRQPKKDLSRILRTEAAISGIERKANSRKYSTLWPKA 94
Query: 289 VLEALTVAITNNQWESALKIFELLRKQDWYVPRCQTYTKLFVMLGKCKQPGYASLLYEKM 468
VLEAL AI N++ESALKIF LLRKQ WY PRCQTYTKL +MLGKCKQP ASLL+E M
Sbjct: 95 VLEALDEAIRENRYESALKIFGLLRKQHWYEPRCQTYTKLLMMLGKCKQPEQASLLFEVM 154
Query: 469 VAEGLKPSVDVYTSLVSVYGLSGHFQEAFGIVEDMKSVTDCKPDIYTYSILINCCSKFRR 648
++EGL+P++DVYT+LVS YG SG +AF VEDMKSV+DCKPD+YTYSILI CC+ R
Sbjct: 155 LSEGLRPTLDVYTALVSAYGHSGQLDKAFCTVEDMKSVSDCKPDVYTYSILIKCCTTLGR 214
Query: 649 FDLIERVLEDMSYLGIECSIVTYNTLIDGYGKAEMFERMEKLLDDMTKNNKCLPDVYTMN 828
FDLIER+ +MSYLGIECS VTYNT+IDGYGKA+MFE ME L +M ++ CLPD++T+N
Sbjct: 215 FDLIERIFTEMSYLGIECSTVTYNTIIDGYGKADMFELMESSLTEMIESGTCLPDIFTLN 274
Query: 829 SFLWAYGNVGEIKEMERWYEKFQLMEVQSDIKTFNILIRSYGKARMHDKMEKVIDFMKKR 1008
SF+WAYGN G+I++ME+WY++FQLM ++ DIKTFNILIRSYGKA M++KM V++FMKKR
Sbjct: 275 SFIWAYGNSGQIEKMEKWYDEFQLMGIRPDIKTFNILIRSYGKACMYEKMVSVMEFMKKR 334
Query: 1009 FCSPTTVTFNILIEMFGRVGNIVKMEYYFRMMKYKGVKPNSVTYCSLVNFYSKAKKLYKI 1188
F SPT VTFNI+IEMFGRVGNI KME +F MK++GVKPNS+TYCSLV+ YSKA L K+
Sbjct: 335 FYSPTIVTFNIVIEMFGRVGNIEKMEEFFLKMKHQGVKPNSITYCSLVSAYSKAGYLKKV 394
Query: 1189 SLILRQVENSDVVLDTPFFNCVISAYGQVGELQRMEEMFVEMKRRKCMPDNITFATMIQA 1368
ILRQ+ENSDV LDTPFFNCV+SAYGQ G+++RM E+F+ MK RKC PDNITFATMIQA
Sbjct: 395 DSILRQIENSDVTLDTPFFNCVLSAYGQAGDVERMGELFLVMKERKCKPDNITFATMIQA 454
Query: 1369 YTAQGMTESAQQLETSLLNRKDNSGLR 1449
Y AQGM E+AQ LE +++ K+ SG R
Sbjct: 455 YNAQGMIEAAQNLEVNMITTKNKSGTR 481
>emb|CBI24939.3| unnamed protein product [Vitis vinifera]
Length = 485
Score = 603 bits (1556), Expect = e-170
Identities = 294/447 (65%), Positives = 359/447 (80%), Gaps = 11/447 (2%)
Frame = +1
Query: 142 TNKKTFFYVKASKKQS-----------KKNLSRILTTEAAVQGIERRALSANSTRLWPKS 288
T+ F +V+A K+ S KK+LSRIL TEAA+ GIER+A S + LWPK+
Sbjct: 35 TSNPPFLFVRAGKRSSGSSQNGLQRQPKKDLSRILRTEAAISGIERKANSRKYSTLWPKA 94
Query: 289 VLEALTVAITNNQWESALKIFELLRKQDWYVPRCQTYTKLFVMLGKCKQPGYASLLYEKM 468
VLEAL AI N++ESALKIF LLRKQ WY PRCQTYTKL +MLGKCKQP ASLL+E M
Sbjct: 95 VLEALDEAIRENRYESALKIFGLLRKQHWYEPRCQTYTKLLMMLGKCKQPEQASLLFEVM 154
Query: 469 VAEGLKPSVDVYTSLVSVYGLSGHFQEAFGIVEDMKSVTDCKPDIYTYSILINCCSKFRR 648
++EGL+P++DVYT+LVS YG SG +AF VEDMKSV+DCKPD+YTYSILI CC+ R
Sbjct: 155 LSEGLRPTLDVYTALVSAYGHSGQLDKAFCTVEDMKSVSDCKPDVYTYSILIKCCTTLGR 214
Query: 649 FDLIERVLEDMSYLGIECSIVTYNTLIDGYGKAEMFERMEKLLDDMTKNNKCLPDVYTMN 828
FDLIER+ +MSYLGIECS VTYNT+IDGYGKA+MFE ME L +M ++ CLPD++T+N
Sbjct: 215 FDLIERIFTEMSYLGIECSTVTYNTIIDGYGKADMFELMESSLTEMIESGTCLPDIFTLN 274
Query: 829 SFLWAYGNVGEIKEMERWYEKFQLMEVQSDIKTFNILIRSYGKARMHDKMEKVIDFMKKR 1008
SF+WAYGN G+I++ME+WY++FQLM ++ DIKTFNILIRSYGKA M++KM V++FMKKR
Sbjct: 275 SFIWAYGNSGQIEKMEKWYDEFQLMGIRPDIKTFNILIRSYGKACMYEKMVSVMEFMKKR 334
Query: 1009 FCSPTTVTFNILIEMFGRVGNIVKMEYYFRMMKYKGVKPNSVTYCSLVNFYSKAKKLYKI 1188
F SPT VTFNI+IEMFGRVGNI KME +F MK++GVKPNS+TYCSLV+ YSKA L K+
Sbjct: 335 FYSPTIVTFNIVIEMFGRVGNIEKMEEFFLKMKHQGVKPNSITYCSLVSAYSKAGYLKKV 394
Query: 1189 SLILRQVENSDVVLDTPFFNCVISAYGQVGELQRMEEMFVEMKRRKCMPDNITFATMIQA 1368
ILRQ+ENSDV LDTPFFNCV+SAYGQ G+++RM E+F+ MK RKC PDNITFATMIQA
Sbjct: 395 DSILRQIENSDVTLDTPFFNCVLSAYGQAGDVERMGELFLVMKERKCKPDNITFATMIQA 454
Query: 1369 YTAQGMTESAQQLETSLLNRKDNSGLR 1449
Y AQGM E+AQ LE +++ K+ SG R
Sbjct: 455 YNAQGMIEAAQNLEVNMITTKNKSGTR 481
>ref|XP_003599420.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355488468|gb|AES69671.1| Pentatricopeptide
repeat-containing protein [Medicago truncatula]
Length = 511
Score = 570 bits (1468), Expect = e-160
Identities = 282/462 (61%), Positives = 357/462 (77%), Gaps = 9/462 (1%)
Frame = +1
Query: 88 TCSPSSMTTFP-ANFFIPHTNKKTFFYVKASKKQS--------KKNLSRILTTEAAVQGI 240
TCS T FP N F H++ + +K S K S KK+LSRIL TEAA++G+
Sbjct: 29 TCS----TKFPNKNHF--HSSSFRVYSLKRSSKPSYEGLQKDPKKDLSRILRTEAAIKGV 82
Query: 241 ERRALSANSTRLWPKSVLEALTVAITNNQWESALKIFELLRKQDWYVPRCQTYTKLFVML 420
E +A S +LWPK+VLEAL AI QW++AL IFELLR Q WY PRCQTYTKL +ML
Sbjct: 83 ENKAKSWKHKQLWPKAVLEALDDAIKGCQWQNALMIFELLRNQYWYEPRCQTYTKLLMML 142
Query: 421 GKCKQPGYASLLYEKMVAEGLKPSVDVYTSLVSVYGLSGHFQEAFGIVEDMKSVTDCKPD 600
KCKQP AS LYE M+ EGLKP+VDV T+LVS YG SG F+ AF +EDMKSV DCKPD
Sbjct: 143 SKCKQPKEASQLYETMLFEGLKPTVDVLTALVSAYGQSGLFRHAFSTIEDMKSVVDCKPD 202
Query: 601 IYTYSILINCCSKFRRFDLIERVLEDMSYLGIECSIVTYNTLIDGYGKAEMFERMEKLLD 780
+YTYS+LI+CC+KFRRFDLIERVL DMSY GIEC+ VTYN++IDGYGKA MFE+ME L
Sbjct: 203 VYTYSVLISCCAKFRRFDLIERVLADMSYSGIECNSVTYNSIIDGYGKAGMFEQMENSLT 262
Query: 781 DMTKNNKCLPDVYTMNSFLWAYGNVGEIKEMERWYEKFQLMEVQSDIKTFNILIRSYGKA 960
DM +N C PDV+T+NS + +YGN G+I +ME+WY++FQLM ++ DIKTFN++I+SYGKA
Sbjct: 263 DMIENENCQPDVFTLNSLIGSYGNGGKIDKMEKWYDEFQLMSIKPDIKTFNMMIKSYGKA 322
Query: 961 RMHDKMEKVIDFMKKRFCSPTTVTFNILIEMFGRVGNIVKMEYYFRMMKYKGVKPNSVTY 1140
M+DKM+ V+DFM++RF +PT VT+N +IE++G+ G I KM+ +F+ MK+ G+KPNSVTY
Sbjct: 323 GMYDKMKSVMDFMERRFFAPTIVTYNTVIEVYGKAGEIEKMDKHFKNMKHIGMKPNSVTY 382
Query: 1141 CSLVNFYSKAKKLYKISLILRQVENSDVVLDTPFFNCVISAYGQVGELQRMEEMFVEMKR 1320
CSLVN YSKA + KI ILR VENSDV+LDTPFFNC+ISAYGQVG+L++M E+F+ M+
Sbjct: 383 CSLVNAYSKAGLIRKIDSILRHVENSDVILDTPFFNCIISAYGQVGDLKKMGELFLAMRA 442
Query: 1321 RKCMPDNITFATMIQAYTAQGMTESAQQLETSLLNRKDNSGL 1446
RKC PD TF MIQAY QG+TE+A+ LET +++ KD+SG+
Sbjct: 443 RKCEPDRTTFTCMIQAYNTQGITEAAKNLETMMISAKDSSGM 484
>ref|XP_002313317.1| predicted protein [Populus trichocarpa] gi|222849725|gb|EEE87272.1|
predicted protein [Populus trichocarpa]
Length = 474
Score = 557 bits (1435), Expect = e-156
Identities = 266/424 (62%), Positives = 336/424 (79%)
Frame = +1
Query: 178 KKQSKKNLSRILTTEAAVQGIERRALSANSTRLWPKSVLEALTVAITNNQWESALKIFEL 357
++QSKK LSRIL TEAA++ IE++A S LWPK+VLEAL AI NQWESALKIFEL
Sbjct: 45 QRQSKKELSRILRTEAAIKAIEQKANSKKYNNLWPKAVLEALDDAIKENQWESALKIFEL 104
Query: 358 LRKQDWYVPRCQTYTKLFVMLGKCKQPGYASLLYEKMVAEGLKPSVDVYTSLVSVYGLSG 537
LRKQ WY PR +TYTKL +MLGKC+QP S L+E M+++GLKP++DVYT+LVS YG SG
Sbjct: 105 LRKQHWYEPRTKTYTKLLMMLGKCRQPEEGSFLFEVMLSDGLKPTIDVYTALVSAYGKSG 164
Query: 538 HFQEAFGIVEDMKSVTDCKPDIYTYSILINCCSKFRRFDLIERVLEDMSYLGIECSIVTY 717
+AF IV +MK++++CKPD+YTYSILINCC K RF+LI +L +MSYLGIECS VTY
Sbjct: 165 QLDKAFSIVVEMKAISECKPDVYTYSILINCCIKLHRFELIRGILAEMSYLGIECSTVTY 224
Query: 718 NTLIDGYGKAEMFERMEKLLDDMTKNNKCLPDVYTMNSFLWAYGNVGEIKEMERWYEKFQ 897
NT+IDGYGKA+MFE ME L DM ++ +PD++T NS + AYG+ G I +ME+WY +FQ
Sbjct: 225 NTIIDGYGKAKMFEEMENTLTDMIESGSSVPDLFTFNSIIGAYGSKGRIDKMEKWYTEFQ 284
Query: 898 LMEVQSDIKTFNILIRSYGKARMHDKMEKVIDFMKKRFCSPTTVTFNILIEMFGRVGNIV 1077
LM ++ DIKTFNILIRSYGKA M+ KM V++FM+KRF SP+ VT NI IE FG+ G+I
Sbjct: 285 LMGLRQDIKTFNILIRSYGKAGMYGKMRSVLEFMEKRFFSPSIVTHNIFIETFGKAGDIE 344
Query: 1078 KMEYYFRMMKYKGVKPNSVTYCSLVNFYSKAKKLYKISLILRQVENSDVVLDTPFFNCVI 1257
ME YF MK+ G+KPN+VTYCSLV+ YSKA + K+ ILRQVENSDV+LDTPFFNCVI
Sbjct: 345 TMEEYFSKMKHLGIKPNTVTYCSLVSAYSKAGHIMKVDSILRQVENSDVILDTPFFNCVI 404
Query: 1258 SAYGQVGELQRMEEMFVEMKRRKCMPDNITFATMIQAYTAQGMTESAQQLETSLLNRKDN 1437
SAYG+ G++++M E+F+ M+ RKC PD+ITFATMIQAY AQGM E+AQ +E ++ + N
Sbjct: 405 SAYGRAGDIEKMSELFLGMEGRKCKPDSITFATMIQAYNAQGMIEAAQGMENMMIATRKN 464
Query: 1438 SGLR 1449
SG+R
Sbjct: 465 SGMR 468
>ref|XP_002517779.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223543051|gb|EEF44586.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 486
Score = 556 bits (1432), Expect = e-156
Identities = 264/422 (62%), Positives = 336/422 (79%)
Frame = +1
Query: 178 KKQSKKNLSRILTTEAAVQGIERRALSANSTRLWPKSVLEALTVAITNNQWESALKIFEL 357
K+ +KK LSR L T+AA++ IE++A S+ RLWPK+VLEAL AI +W+SALKIFEL
Sbjct: 58 KRHTKKELSRFLRTDAAIKAIEQKADSSKYNRLWPKAVLEALDDAIKERRWKSALKIFEL 117
Query: 358 LRKQDWYVPRCQTYTKLFVMLGKCKQPGYASLLYEKMVAEGLKPSVDVYTSLVSVYGLSG 537
LRKQ WY PRCQTYTKL +MLGKC+QP A LL+E M EGL+P++DVYT+LVS YG SG
Sbjct: 118 LRKQHWYEPRCQTYTKLLMMLGKCRQPEEARLLFEVMQTEGLRPTIDVYTALVSAYGESG 177
Query: 538 HFQEAFGIVEDMKSVTDCKPDIYTYSILINCCSKFRRFDLIERVLEDMSYLGIECSIVTY 717
+AF V++MKSV+DCKPD+YTYS+LIN C+K RFDLI R+L +MSYLG+ECS VT+
Sbjct: 178 LLAKAFSTVDEMKSVSDCKPDVYTYSVLINICTKLHRFDLIGRILSEMSYLGVECSTVTF 237
Query: 718 NTLIDGYGKAEMFERMEKLLDDMTKNNKCLPDVYTMNSFLWAYGNVGEIKEMERWYEKFQ 897
NT+I+GYGKA+MF ME L +M + +PD++T NS + AYGN G I++ME+WY +FQ
Sbjct: 238 NTIINGYGKAKMFREMENSLTNMIEIGNSVPDLFTFNSVIGAYGNSGRIEKMEKWYNEFQ 297
Query: 898 LMEVQSDIKTFNILIRSYGKARMHDKMEKVIDFMKKRFCSPTTVTFNILIEMFGRVGNIV 1077
LM + DIKTFNILI+SYGKA M++K+ VI+FMKKRF PT VT+NI+IE FGR G+I
Sbjct: 298 LMGISPDIKTFNILIKSYGKAGMYEKINSVIEFMKKRFFPPTVVTYNIIIETFGRAGDIE 357
Query: 1078 KMEYYFRMMKYKGVKPNSVTYCSLVNFYSKAKKLYKISLILRQVENSDVVLDTPFFNCVI 1257
M+ YF+ MK+ G+KPN++TYCSLV+ YSKA L K++ ILRQVENSDVVLDT FFNC+I
Sbjct: 358 NMDEYFKTMKHLGMKPNAITYCSLVSAYSKAGLLMKVNSILRQVENSDVVLDTTFFNCII 417
Query: 1258 SAYGQVGELQRMEEMFVEMKRRKCMPDNITFATMIQAYTAQGMTESAQQLETSLLNRKDN 1437
+AYGQ G++ +M E+F+EM+ R+CMPDN+TFATMIQAY QGMTE+AQ LE +L K N
Sbjct: 418 NAYGQAGDVDKMAELFLEMRERECMPDNVTFATMIQAYRGQGMTEAAQALEKMMLAAKGN 477
Query: 1438 SG 1443
SG
Sbjct: 478 SG 479