BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00005684
         (1017 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

dbj|BAJ91866.1| predicted protein [Hordeum vulgare subsp. vulgare]     63   2e-19
ref|XP_002318989.1| predicted protein [Populus trichocarpa] gi|2...    59   2e-16
emb|CBI19898.3| unnamed protein product [Vitis vinifera]               57   3e-16
ref|XP_003560798.1| PREDICTED: DNA-directed RNA polymerase I sub...    57   1e-15
ref|NP_001051059.2| Os03g0711700 [Oryza sativa Japonica Group] g...    56   7e-15

>dbj|BAJ91866.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 125

 Score = 62.8 bits (151), Expect(2) = 2e-19
 Identities = 28/73 (38%), Positives = 42/73 (57%)
 Frame = +2

Query: 494 DFRRDLNKLEPFIKVKGSMNVNFEVTMKQSNEICGKCNKAYMNFTERQTRSADEGMTVTY 673
           D RR+L K++PF+ ++ + N++  V    +   C KCN   + +  +Q RSADEG T+ Y
Sbjct: 54  DIRREL-KIKPFVVLESAPNLDIVVQRSLTERACPKCNHHELEYYTKQLRSADEGQTIFY 112

Query: 674 HCPNCPHTETRNT 712
            CP C H    NT
Sbjct: 113 ECPECGHAFNENT 125



 Score = 59.7 bits (143), Expect(2) = 2e-19
 Identities = 24/43 (55%), Positives = 30/43 (69%)
 Frame = +3

Query: 279 DFMFCQICGTMLSFKSHKHAECSLCGFKRPAKEFAKCEISYTV 407
           DF+FC +CGT+L F SH++A C LCGFKR AK+    E  Y V
Sbjct: 8   DFLFCGVCGTLLDFNSHRYASCPLCGFKRKAKDIEGKETRYAV 50


>ref|XP_002318989.1| predicted protein [Populus trichocarpa] gi|222857365|gb|EEE94912.1|
           predicted protein [Populus trichocarpa]
          Length = 117

 Score = 58.9 bits (141), Expect(2) = 2e-16
 Identities = 25/45 (55%), Positives = 32/45 (71%)
 Frame = +3

Query: 273 GYDFMFCQICGTMLSFKSHKHAECSLCGFKRPAKEFAKCEISYTV 407
           G DFMFC +CGTM+   S +H EC LC FK+ AK+ ++ EISY V
Sbjct: 6   GGDFMFCDLCGTMMFLYSKEHVECPLCKFKKSAKDLSEREISYQV 50



 Score = 53.9 bits (128), Expect(2) = 2e-16
 Identities = 30/72 (41%), Positives = 37/72 (51%)
 Frame = +2

Query: 494 DFRRDLNKLEPFIKVKGSMNVNFEVTMKQSNEICGKCNKAYMNFTERQTRSADEGMTVTY 673
           D RRDL         +G M    EV   + N+ C KC    + F+ RQ RSADEG T  +
Sbjct: 54  DMRRDLG----ISHFEGKM----EVKDMEINKKCEKCGHTKLKFSTRQMRSADEGQTTFF 105

Query: 674 HCPNCPHTETRN 709
           HC NC +T T N
Sbjct: 106 HCANCSYTFTEN 117


>emb|CBI19898.3| unnamed protein product [Vitis vinifera]
          Length = 126

 Score = 57.4 bits (137), Expect(2) = 3e-16
 Identities = 28/74 (37%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
 Frame = +2

Query: 494 DFRRDLNKLEPFIKVKGSMNVNFEVTMKQSNEICGKCNK-AYMNFTERQTRSADEGMTVT 670
           D RR+LN +EPF+K+ G +    E    ++   C +C +  ++ +  RQ RSADEG T+ 
Sbjct: 54  DIRRELN-IEPFVKLDGIITEESEAQNAKTKGRCDRCEEDTWLYYYTRQLRSADEGQTIF 112

Query: 671 YHCPNCPHTETRNT 712
           Y C  C H  ++NT
Sbjct: 113 YECTKCGHKWSQNT 126



 Score = 54.7 bits (130), Expect(2) = 3e-16
 Identities = 24/43 (55%), Positives = 29/43 (67%)
 Frame = +3

Query: 279 DFMFCQICGTMLSFKSHKHAECSLCGFKRPAKEFAKCEISYTV 407
           DFMFC +CGTML   S K+AEC LC  +R  K+ +  EI YTV
Sbjct: 8   DFMFCNLCGTMLCMSSTKYAECPLCKSRRKVKDISGREIRYTV 50


>ref|XP_003560798.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA12-like
           [Brachypodium distachyon]
          Length = 125

 Score = 56.6 bits (135), Expect(2) = 1e-15
 Identities = 26/67 (38%), Positives = 39/67 (58%)
 Frame = +2

Query: 494 DFRRDLNKLEPFIKVKGSMNVNFEVTMKQSNEICGKCNKAYMNFTERQTRSADEGMTVTY 673
           D RR+L K+EPF+ ++ +  ++  V     +E C KC    + +  +Q R+ADEG TV Y
Sbjct: 54  DIRREL-KIEPFVTLESAPKMDVIVQRVVVDETCPKCGHPQLEYHTKQLRAADEGQTVFY 112

Query: 674 HCPNCPH 694
            CP C H
Sbjct: 113 ECPECRH 119



 Score = 53.5 bits (127), Expect(2) = 1e-15
 Identities = 23/43 (53%), Positives = 27/43 (62%)
 Frame = +3

Query: 279 DFMFCQICGTMLSFKSHKHAECSLCGFKRPAKEFAKCEISYTV 407
           DF+FC +CGT+L F S + A C LCGFKR AK     E  Y V
Sbjct: 8   DFLFCSVCGTLLDFDSVRSASCPLCGFKRKAKAIEGKETRYAV 50


>ref|NP_001051059.2| Os03g0711700 [Oryza sativa Japonica Group]
           gi|255674831|dbj|BAF12973.2| Os03g0711700 [Oryza sativa
           Japonica Group]
          Length = 154

 Score = 55.8 bits (133), Expect(2) = 7e-15
 Identities = 24/43 (55%), Positives = 29/43 (67%)
 Frame = +3

Query: 279 DFMFCQICGTMLSFKSHKHAECSLCGFKRPAKEFAKCEISYTV 407
           DF+FC +CGT+L F S + A C LCGFKR AK+    E  YTV
Sbjct: 8   DFLFCGVCGTLLKFDSVRSASCPLCGFKRKAKDIEGKETRYTV 50



 Score = 51.6 bits (122), Expect(2) = 7e-15
 Identities = 26/73 (35%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
 Frame = +2

Query: 494 DFRRDLNKLEPFIKVKGSMNVNFEVTMKQS-NEICGKCNKAYMNFTERQTRSADEGMTVT 670
           D RR+L KL+P++ ++ ++     +  + + N+ C KC    + +  +Q RSADEG TV 
Sbjct: 82  DIRREL-KLDPYVILETTLKEEDVIVERATVNKECEKCKNPELQYYTKQLRSADEGQTVF 140

Query: 671 YHCPNCPHTETRN 709
           Y C NC H    N
Sbjct: 141 YKCANCRHEFNEN 153