BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00005672
         (1092 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAN66619.1| hypothetical protein VITISV_028369 [Vitis vinifera]    86   3e-19
ref|XP_002278547.2| PREDICTED: F-box protein SKIP23-like [Vitis ...    84   7e-19
ref|XP_002305539.1| f-box family protein [Populus trichocarpa] g...    91   1e-18
ref|XP_002313690.1| f-box family protein [Populus trichocarpa] g...    87   2e-17
ref|XP_002279526.2| PREDICTED: LOW QUALITY PROTEIN: F-box protei...    94   6e-17

>emb|CAN66619.1| hypothetical protein VITISV_028369 [Vitis vinifera]
          Length = 986

 Score = 85.9 bits (211), Expect(2) = 3e-19
 Identities = 59/187 (31%), Positives = 98/187 (52%), Gaps = 12/187 (6%)
 Frame = +2

Query: 401  VNPLPESFPKVLNLLDLKLHGFHKEHYLVGMGTNTGRKLTYFH--NLQRVTLSSTATMDD 574
            +  LP++FPKVLN LD ++    K + L       G+ +T F   ++    L   +  D+
Sbjct: 518  IKHLPKNFPKVLNTLDFRVREVGKTYGLRFFDVR-GKPJTRFEFKSILITKLIMFSKGDE 576

Query: 575  FIIIALHSWKYLVYFRAGDERWNFIGD--KNCEHDDLINYKGKFYAVDKMGRTLTVDWHT 748
            + ++ +H    L  +R G+++W+ I D  +    DD+I YKG+FYA+D  GR + +D  +
Sbjct: 577  YGLMMIHFRGGLALWRLGEKKWSLIDDGAEKSHFDDVIYYKGRFYAIDYXGRIVVIDADS 636

Query: 749  LSVTLGANTIANDH-RKKHLVESNGDLFLVDVHYRLPC---KDCVGVF----LGCKVFRL 904
            L  T  A+ +       +H VES G+LFLVD +    C    D V V     +  +VF+ 
Sbjct: 637  LKATELASPVHGSRGNHRHFVESFGELFLVDKYVVTFCNNYSDIVSVVPDYPVHXEVFKF 696

Query: 905  DEKERQW 925
             E+E++W
Sbjct: 697  IEEEQKW 703



 Score = 36.2 bits (82), Expect(2) = 3e-19
 Identities = 16/35 (45%), Positives = 23/35 (65%)
 Frame = +1

Query: 940  LGNSVYLVGDWQRSYSIPACDLRGFKGNCILFTYY 1044
            +G+ V  V D  R++S+ + D  GFKGNC+ FT Y
Sbjct: 709  IGDRVLFVDD-DRTFSLSSTDFPGFKGNCVYFTEY 742



 Score = 77.0 bits (188), Expect(2) = 6e-17
 Identities = 55/182 (30%), Positives = 94/182 (51%), Gaps = 7/182 (3%)
 Frame = +2

Query: 401 VNPLPESFPKVLNLLDLKLHGFHKEHYLVGMGTNTGRKLTYFHN----LQRVTLSSTATM 568
           +  LP++FPKVLN L+ ++    K + L       G+ +T F      +++V + S    
Sbjct: 128 IQHLPKNFPKVLNTLNFRVREVGKAYGLRFFDVR-GKPITSFEFKSILIKKVIMFSKG-- 184

Query: 569 DDFIIIALHSWKYLVYFRAGDERWNFIGD--KNCEHDDLINYKGKFYAVDKMGRTLTVDW 742
           D++ ++ +H    L  +R G+E+W+ I D  +    DD+I YKG+FYA+D  GR + +D 
Sbjct: 185 DEYGLMMIHIRGRLALWRLGEEKWSLIDDGAEKSHFDDVIYYKGRFYAIDYKGRIVVIDA 244

Query: 743 HTLSVTLGANTIANDH-RKKHLVESNGDLFLVDVHYRLPCKDCVGVFLGCKVFRLDEKER 919
            +L  T  A+ +       KH VES G+L +V         D     +  +VF+  E+E+
Sbjct: 245 DSLKATELASPVHGSRGTHKHFVESFGELDIV--------ADVPDYPVHFEVFKFIEEEQ 296

Query: 920 QW 925
           +W
Sbjct: 297 KW 298



 Score = 37.4 bits (85), Expect(2) = 6e-17
 Identities = 16/34 (47%), Positives = 24/34 (70%)
 Frame = +1

Query: 937  NLGNSVYLVGDWQRSYSIPACDLRGFKGNCILFT 1038
            ++G+ V  VGD  R++S+ + D  GFKGNC+ FT
Sbjct: 303  DIGDRVLFVGD-DRTFSLSSTDFPGFKGNCVYFT 335


>ref|XP_002278547.2| PREDICTED: F-box protein SKIP23-like [Vitis vinifera]
          Length = 405

 Score = 83.6 bits (205), Expect(2) = 7e-19
 Identities = 59/193 (30%), Positives = 101/193 (52%), Gaps = 18/193 (9%)
 Frame = +2

Query: 401 VNPLPESFPKVLNLLDLKLHGFHKEHYLVGMGTNTGRKLTYFHN----LQRVTLSSTATM 568
           +  LP++FPKVLN L+ ++    K + L       G+ +T F      +++V + S    
Sbjct: 128 IQHLPKNFPKVLNTLNFRVREVGKAYGLRFFDVR-GKPITSFEFKSILIKKVIMFSKG-- 184

Query: 569 DDFIIIALHSWKYLVYFRAGDERWNFIGD--KNCEHDDLINYKGKFYAVDKMGRTLTVDW 742
           D++ ++ +H    L  +R G+E+W+ I D  +    DD+I YKG+FYA+D  GR + +D 
Sbjct: 185 DEYGLMMIHIRGRLALWRLGEEKWSLIDDGAEKSHFDDVIYYKGRFYAIDYKGRIVVIDA 244

Query: 743 HTLSVTLGANTIANDH-RKKHLVESNGDLFLVDVH----YRLPCKDCVGVF-------LG 886
            +L  T  A+ +       KH VES G+LFLVD +     ++ C D   +        + 
Sbjct: 245 DSLKATELASPVHGSRGTHKHFVESFGELFLVDKYLDDELQIFCNDYSDIVADVPDYPVH 304

Query: 887 CKVFRLDEKERQW 925
            +VF+  E+E++W
Sbjct: 305 FEVFKFIEEEQKW 317



 Score = 37.4 bits (85), Expect(2) = 7e-19
 Identities = 16/34 (47%), Positives = 24/34 (70%)
 Frame = +1

Query: 937  NLGNSVYLVGDWQRSYSIPACDLRGFKGNCILFT 1038
            ++G+ V  VGD  R++S+ + D  GFKGNC+ FT
Sbjct: 322  DIGDRVLFVGD-DRTFSLSSTDFPGFKGNCVYFT 354


>ref|XP_002305539.1| f-box family protein [Populus trichocarpa]
           gi|222848503|gb|EEE86050.1| f-box family protein
           [Populus trichocarpa]
          Length = 469

 Score = 90.9 bits (224), Expect(3) = 1e-18
 Identities = 58/190 (30%), Positives = 97/190 (51%), Gaps = 18/190 (9%)
 Frame = +2

Query: 410 LPESFPKVLNLLDLKLHGFHKEHYLVGMGTN-TGRKLTYFHNL--QRVTLSSTATMDDFI 580
           LP + P+VL+L++L++     E+ L  +         T   NL  ++V +    ++ +F+
Sbjct: 116 LPNNLPRVLDLMNLRIRELGHEYVLHHLNYKPNSSSFTDAGNLYMEKVVMIWLNSLTEFV 175

Query: 581 IIALHSWKYLVYFRAGDERWNFIGDKNCEHDDLINYKGKFYAVDKMGRTLTVDWHTLSVT 760
           ++ +H    L  F++GD+RW  I +     DD+I YKG+FYAVD  GRT+ V   T    
Sbjct: 176 LLTIHVSGKLAIFKSGDKRWTIINEMPSPFDDVIVYKGRFYAVDNTGRTVVVAMDTNLGL 235

Query: 761 LGANTIANDHRKKHLVESNGDLFLVDVHYRLPCKDCVGV---------------FLGCKV 895
           +G      D  KK+LVES GDL LVD++  +   + + +                +  KV
Sbjct: 236 VGNPVFGGD--KKYLVESKGDLLLVDMYLSIDSDEGLSIGHDVVQDLVQYMSERTVWFKV 293

Query: 896 FRLDEKERQW 925
           F+L+E+ + W
Sbjct: 294 FKLNEEGKCW 303



 Score = 27.3 bits (59), Expect(3) = 1e-18
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = +1

Query: 937  NLGNSVYLVGDWQRSYSIPACDLRGFKGNCILF 1035
            +L + V  +GD   ++S  A +L G KGNCI F
Sbjct: 308  DLEDRVLFLGD-DLTFSASASELSGCKGNCIFF 339



 Score = 21.9 bits (45), Expect(3) = 1e-18
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +3

Query: 375 IFYPLSVSRSTLYPNHFQR 431
           +F PLS  RST  PN+  R
Sbjct: 104 LFDPLSRCRSTSLPNNLPR 122


>ref|XP_002313690.1| f-box family protein [Populus trichocarpa]
           gi|222850098|gb|EEE87645.1| f-box family protein
           [Populus trichocarpa]
          Length = 410

 Score = 86.7 bits (213), Expect(2) = 2e-17
 Identities = 60/191 (31%), Positives = 96/191 (50%), Gaps = 19/191 (9%)
 Frame = +2

Query: 410 LPESFPKVLNLLDLKLHGFHKEHYL--VGMGTNTGRKLTYFHNL--QRVTLSSTATMDDF 577
           L  S P+VL+L++L++     E+ L  V    N+    T   NL  ++V +       +F
Sbjct: 116 LHHSLPRVLDLMNLRIRELGHEYVLHHVSYKPNSS-SFTDAGNLYMEKVVMIWLNCETEF 174

Query: 578 IIIALHSWKYLVYFRAGDERWNFIGDKNCEHDDLINYKGKFYAVDKMGRTLTVDWHTLSV 757
           +++ +H    L  F++GD+RW  I +     DD+I YKG+FYAVD  GRT+ V   T   
Sbjct: 175 VLLTIHVSGKLAMFKSGDKRWTIINEMPSPFDDVIVYKGRFYAVDNTGRTVVVALDTDLG 234

Query: 758 TLGANTIANDHRKKHLVESNGDLFLVDVHYRLPCKDCVGV---------------FLGCK 892
            +G      D  KK+LVES GDL LVD++  +   + + +                +  K
Sbjct: 235 LVGDPVFGGD--KKYLVESKGDLLLVDMYLSIDTDEGLSIGNDVVQDLVQYMSERTVRFK 292

Query: 893 VFRLDEKERQW 925
           VF+L+E+ + W
Sbjct: 293 VFKLNEEGKSW 303



 Score = 29.6 bits (65), Expect(2) = 2e-17
 Identities = 15/33 (45%), Positives = 20/33 (60%)
 Frame = +1

Query: 937  NLGNSVYLVGDWQRSYSIPACDLRGFKGNCILF 1035
            NL + V  +GD   ++S  A +L G KGNCI F
Sbjct: 308  NLEDRVLFLGD-DSTFSASASELSGCKGNCIFF 339


>ref|XP_002279526.2| PREDICTED: LOW QUALITY PROTEIN: F-box protein SKIP23-like [Vitis
           vinifera]
          Length = 387

 Score = 94.0 bits (232), Expect = 6e-17
 Identities = 65/189 (34%), Positives = 97/189 (51%), Gaps = 10/189 (5%)
 Frame = +2

Query: 410 LPESFPKVLNLLDLKLHGFHKEHYLVGMGTNT-GRKLTYFHNLQRVTLSSTATMDDFIII 586
           LP  FPK  +   L++    +E+ L  M     G        +++V   S    DDF ++
Sbjct: 115 LPPDFPKTFDFSGLRVFELGQEYVLEYMDYRPPGNAYLGSLYMEKVAFCS-GNGDDFWLL 173

Query: 587 ALHSWKYLVYFRAGDERWNFIGDKNCEHDDLINYKGKFYAVDKMGRTLTVDWHTLS---V 757
            +H    L  FR+GD++W  I D    +DD+I + GKFYAVD  GRT+ VD    S   V
Sbjct: 174 TIHLSGKLAMFRSGDKKWMIIDDMQSPYDDVIFFDGKFYAVDNTGRTVVVDVADGSSPVV 233

Query: 758 TLGANTIANDHRKKHLVESNGDLFLVDVHYRLPCKD------CVGVFLGCKVFRLDEKER 919
            L A+++     KK LVES G+L LVD ++ +   D       +   +  KVFRLD++E+
Sbjct: 234 NLAASSVFGGD-KKVLVESEGELLLVDTYFTMYHDDDEHVRWMIERMIHFKVFRLDQREQ 292

Query: 920 QWCR*ETWG 946
           +W   E+ G
Sbjct: 293 KWVEIESLG 301