BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00005657
         (1061 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002300673.1| predicted protein [Populus trichocarpa] gi|2...   427   e-117
ref|XP_002284797.2| PREDICTED: tRNA pseudouridine synthase A, mi...   421   e-115
ref|XP_003610360.1| tRNA pseudouridine synthase [Medicago trunca...   410   e-112
gb|ACJ85562.1| unknown [Medicago truncatula] gi|388491044|gb|AFK...   410   e-112
ref|XP_003610356.1| tRNA pseudouridine synthase [Medicago trunca...   410   e-112

>ref|XP_002300673.1| predicted protein [Populus trichocarpa] gi|222842399|gb|EEE79946.1|
            predicted protein [Populus trichocarpa]
          Length = 429

 Score =  427 bits (1097), Expect = e-117
 Identities = 215/311 (69%), Positives = 248/311 (79%), Gaps = 9/311 (2%)
 Frame = +1

Query: 154  QKPRYKRRKIAIFLAYCGVGYQGMQKNPGAKTIEGELEEALYLSGAIPEHDRGKPKRFDW 333
            +K RYKRRKIAIF AYCGVGYQGMQKNPGAKTIEG+LEEAL+ +GA+PE DRG PKR+DW
Sbjct: 10   KKQRYKRRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHAGAVPEQDRGIPKRYDW 69

Query: 334  ARSARTDKGVSAVGQVVSGRFYVDPPGFIDRFNSNLPNQIRIFGFNRVTSSFSAKKFCDR 513
            ARSARTDKGVSAVGQVVSGRFY+DPPG ++R +SNL  Q RIFG+ RVT SF+AKKFCDR
Sbjct: 70   ARSARTDKGVSAVGQVVSGRFYIDPPGLVERLHSNLSPQFRIFGYKRVTGSFNAKKFCDR 129

Query: 514  RRYVYLIPVFALDRNAHRDRESVLASLGSDNELVKCLECSERGRKVLGAMGKH------Y 675
            RRYVYLIPVFALD  +HRDRESVLASL S +EL+KCLECSERGRKV GA+GK        
Sbjct: 130  RRYVYLIPVFALDPCSHRDRESVLASLRSGSELIKCLECSERGRKVAGAVGKRSFELTDN 189

Query: 676  SGAKIXXXXXXXXXXXXXXXMASVECGNGDE---KGVLENGSGFSYGEKEKERFNRILSH 846
            S                   + SVE G+ ++   K  +  GS F YGEKEKERFNRIL +
Sbjct: 190  SSNDKDASVKSEIKEEVDEIIVSVENGDDEKTKSKEEMVKGSSFCYGEKEKERFNRILGY 249

Query: 847  YVGTHNFHNFTTRIKAEDPSAVRFIISFNANSVVTVDGMDFVKCEVVGQSFMLHQIRKLV 1026
            YVG+HNFHNFTTR KAEDPSA R+I+SF A + V V+G++FVKCEVVGQSFMLHQIRK++
Sbjct: 250  YVGSHNFHNFTTRTKAEDPSARRYIVSFEAKTTVNVEGIEFVKCEVVGQSFMLHQIRKMI 309

Query: 1027 GLAVAIMRDCA 1059
            G+AVAIMR+CA
Sbjct: 310  GVAVAIMRNCA 320


>ref|XP_002284797.2| PREDICTED: tRNA pseudouridine synthase A, mitochondrial-like [Vitis
            vinifera]
          Length = 503

 Score =  421 bits (1081), Expect = e-115
 Identities = 223/375 (59%), Positives = 259/375 (69%), Gaps = 57/375 (15%)
 Frame = +1

Query: 106  STSDDEEQTITITNPDQKPRYKRRKIAIFLAYCGVGYQGMQKNPGAKTIEGELEEALYLS 285
            +TSDDE+     T   +KPRYKRRKIAIF AYCGVGYQGMQKNPGAKTIEG+LEEAL+ S
Sbjct: 18   TTSDDED--CDTTTATKKPRYKRRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFFS 75

Query: 286  GAIPEHDRGKPKRFDWARSARTDKGVSAVGQVVSGRFYVDPPGFIDRFNSNLPNQIRIFG 465
            GA+PE DRG PKRFDWARSARTDKGVSAVGQVVSGRFY+DPPG ++R NSNLP QIRIFG
Sbjct: 76   GAVPEQDRGHPKRFDWARSARTDKGVSAVGQVVSGRFYIDPPGLVERLNSNLPPQIRIFG 135

Query: 466  FNRVTSSFSAKKFCDRRRYVYLIPVFALDRNAHRDRESVLASLGSDNELVKCLECSERGR 645
            F RVT+SF+AKKFCDRRRYVYLIPVFALD ++H DRESVLAS+GS+NELVKCLECSERGR
Sbjct: 136  FKRVTASFNAKKFCDRRRYVYLIPVFALDPSSHPDRESVLASVGSENELVKCLECSERGR 195

Query: 646  KVLGAMGKHYSGAKIXXXXXXXXXXXXXXXMASV-----------------ECGNG---- 762
            KV+G MGK    +K+               + +                    GN     
Sbjct: 196  KVVGIMGKRSFESKVSVDDREDVEGESKNIVGAAILKSEAKEESMASSDNRHDGNSISQP 255

Query: 763  -----------------DEKGVLENGSGFSYGEKEKERFNR------------------- 834
                             D +   +N  G S+ E+  +  N+                   
Sbjct: 256  IKEGRCFQDNETSESTPDSRASAQNEPGVSHSEQSDKGENKLEKGSGFCYGDKERERFNR 315

Query: 835  ILSHYVGTHNFHNFTTRIKAEDPSAVRFIISFNANSVVTVDGMDFVKCEVVGQSFMLHQI 1014
            IL HYVGTHNFHNFTTRIKAEDPSA RFI+SF+ N++VTV+G++FVKCEVVGQSFMLHQI
Sbjct: 316  ILGHYVGTHNFHNFTTRIKAEDPSAQRFIVSFDGNTIVTVEGIEFVKCEVVGQSFMLHQI 375

Query: 1015 RKLVGLAVAIMRDCA 1059
            RK++GLAVAIMR+ A
Sbjct: 376  RKMIGLAVAIMRNVA 390


>ref|XP_003610360.1| tRNA pseudouridine synthase [Medicago truncatula]
            gi|355511415|gb|AES92557.1| tRNA pseudouridine synthase
            [Medicago truncatula] gi|388510220|gb|AFK43176.1| unknown
            [Medicago truncatula]
          Length = 530

 Score =  410 bits (1054), Expect = e-112
 Identities = 228/378 (60%), Positives = 254/378 (67%), Gaps = 60/378 (15%)
 Frame = +1

Query: 106  STSDDEEQTITITNPDQKPRYKRRKIAIFLAYCGVGYQGMQKNPGAKTIEGELEEALYLS 285
            +TSDDE  T   T    K RYKRRK+AIF AYCGVGYQGMQKNPGAKTIEGELEEALY+S
Sbjct: 34   TTSDDEGCT---TAEGSKVRYKRRKVAIFFAYCGVGYQGMQKNPGAKTIEGELEEALYVS 90

Query: 286  GAIPEHDRGKPKRFDWARSARTDKGVSAVGQVVSGRFYVDPPGFIDRFNSNLPNQIRIFG 465
            GA+PE DRG  KR+DWARSARTDKGVSAVGQVVSGRFY+DPPGF+DR NSNLP+QIRIFG
Sbjct: 91   GAVPEQDRGLSKRYDWARSARTDKGVSAVGQVVSGRFYIDPPGFVDRLNSNLPSQIRIFG 150

Query: 466  FNRVTSSFSAKKFCDRRRYVYLIPVFALDRNAHRDRESVLASLGSDNELVKCLECSERGR 645
            F RVT+SFSAKKFCDRRRYVYLIPVFALD   HRDRE+VLASLGS+NELVKCL CSERGR
Sbjct: 151  FKRVTASFSAKKFCDRRRYVYLIPVFALDPCCHRDRETVLASLGSENELVKCLPCSERGR 210

Query: 646  KVLGAMGK-------------------------------HYSGAKIXXXXXXXXXXXXXX 732
            KV G +G                                  S +K               
Sbjct: 211  KVEGVVGNSKRNLELEAVDVENGSSNKNDVVDSGVTKDVEVSLSKGDDNHLNKESINDNE 270

Query: 733  XMASVECGNG-------DEKGVLENGSGFSYGEKEKERFNR------------------- 834
               SVE  N        DE   +  GS  + G  E+E+ NR                   
Sbjct: 271  GKVSVEEVNSKTVVSDQDEVAPINGGSENNLGILEEEKVNREDTAANGSGFCYGEKERER 330

Query: 835  ---ILSHYVGTHNFHNFTTRIKAEDPSAVRFIISFNANSVVTVDGMDFVKCEVVGQSFML 1005
               IL  YVGTHNFHNFTTRIK EDPSA RFIISF+A++ V V+GM+FVKCE+VGQSFML
Sbjct: 331  FNNILKCYVGTHNFHNFTTRIKPEDPSAKRFIISFDASTTVVVEGMEFVKCEIVGQSFML 390

Query: 1006 HQIRKLVGLAVAIMRDCA 1059
            HQIRK++GLAVAIMR+CA
Sbjct: 391  HQIRKMMGLAVAIMRNCA 408


>gb|ACJ85562.1| unknown [Medicago truncatula] gi|388491044|gb|AFK33588.1| unknown
            [Medicago truncatula]
          Length = 530

 Score =  410 bits (1054), Expect = e-112
 Identities = 228/378 (60%), Positives = 254/378 (67%), Gaps = 60/378 (15%)
 Frame = +1

Query: 106  STSDDEEQTITITNPDQKPRYKRRKIAIFLAYCGVGYQGMQKNPGAKTIEGELEEALYLS 285
            +TSDDE  T   T    K RYKRRK+AIF AYCGVGYQGMQKNPGAKTIEGELEEALY+S
Sbjct: 34   TTSDDEGCT---TAEGSKVRYKRRKVAIFFAYCGVGYQGMQKNPGAKTIEGELEEALYVS 90

Query: 286  GAIPEHDRGKPKRFDWARSARTDKGVSAVGQVVSGRFYVDPPGFIDRFNSNLPNQIRIFG 465
            GA+PE DRG  KR+DWARSARTDKGVSAVGQVVSGRFY+DPPGF+DR NSNLP+QIRIFG
Sbjct: 91   GAVPEQDRGLSKRYDWARSARTDKGVSAVGQVVSGRFYIDPPGFVDRLNSNLPSQIRIFG 150

Query: 466  FNRVTSSFSAKKFCDRRRYVYLIPVFALDRNAHRDRESVLASLGSDNELVKCLECSERGR 645
            F RVT+SFSAKKFCDRRRYVYLIPVFALD   HRDRE+VLASLGS+NELVKCL CSERGR
Sbjct: 151  FKRVTASFSAKKFCDRRRYVYLIPVFALDPCCHRDRETVLASLGSENELVKCLPCSERGR 210

Query: 646  KVLGAMGK-------------------------------HYSGAKIXXXXXXXXXXXXXX 732
            KV G +G                                  S +K               
Sbjct: 211  KVEGVVGNSKRNLELEAVDVENGSSNKNDVVDSGVTKDVEVSLSKGDDNHLNKESINDNE 270

Query: 733  XMASVECGNG-------DEKGVLENGSGFSYGEKEKERFNR------------------- 834
               SVE  N        DE   +  GS  + G  E+E+ NR                   
Sbjct: 271  GKVSVEEVNSKTVVSDQDEVAPINGGSENNLGILEEEKVNREDTAANGSGFCYGEKERER 330

Query: 835  ---ILSHYVGTHNFHNFTTRIKAEDPSAVRFIISFNANSVVTVDGMDFVKCEVVGQSFML 1005
               IL  YVGTHNFHNFTTRIK EDPSA RFIISF+A++ V V+GM+FVKCE+VGQSFML
Sbjct: 331  FNNILKCYVGTHNFHNFTTRIKPEDPSAKRFIISFDASTTVVVEGMEFVKCEIVGQSFML 390

Query: 1006 HQIRKLVGLAVAIMRDCA 1059
            HQIRK++GLAVAIMR+CA
Sbjct: 391  HQIRKMMGLAVAIMRNCA 408


>ref|XP_003610356.1| tRNA pseudouridine synthase [Medicago truncatula]
            gi|355511411|gb|AES92553.1| tRNA pseudouridine synthase
            [Medicago truncatula]
          Length = 530

 Score =  410 bits (1054), Expect = e-112
 Identities = 228/378 (60%), Positives = 254/378 (67%), Gaps = 60/378 (15%)
 Frame = +1

Query: 106  STSDDEEQTITITNPDQKPRYKRRKIAIFLAYCGVGYQGMQKNPGAKTIEGELEEALYLS 285
            +TSDDE  T   T    K RYKRRK+AIF AYCGVGYQGMQKNPGAKTIEGELEEALY+S
Sbjct: 34   TTSDDEGCT---TAEGSKVRYKRRKVAIFFAYCGVGYQGMQKNPGAKTIEGELEEALYVS 90

Query: 286  GAIPEHDRGKPKRFDWARSARTDKGVSAVGQVVSGRFYVDPPGFIDRFNSNLPNQIRIFG 465
            GA+PE DRG  KR+DWARSARTDKGVSAVGQVVSGRFY+DPPGF+DR NSNLP+QIRIFG
Sbjct: 91   GAVPEQDRGLSKRYDWARSARTDKGVSAVGQVVSGRFYIDPPGFVDRLNSNLPSQIRIFG 150

Query: 466  FNRVTSSFSAKKFCDRRRYVYLIPVFALDRNAHRDRESVLASLGSDNELVKCLECSERGR 645
            F RVT+SFSAKKFCDRRRYVYLIPVFALD   HRDRE+VLASLGS+NELVKCL CSERGR
Sbjct: 151  FKRVTASFSAKKFCDRRRYVYLIPVFALDPCCHRDRETVLASLGSENELVKCLPCSERGR 210

Query: 646  KVLGAMGK-------------------------------HYSGAKIXXXXXXXXXXXXXX 732
            KV G +G                                  S +K               
Sbjct: 211  KVEGVVGNSKRNLELEAVDVENGSSNKNDVVDSGVTKDVEVSLSKGDDNHLNKESINDNE 270

Query: 733  XMASVECGNG-------DEKGVLENGSGFSYGEKEKERFNR------------------- 834
               SVE  N        DE   +  GS  + G  E+E+ NR                   
Sbjct: 271  GKVSVEEVNSKTVVSDEDEVAPINGGSENNLGILEEEKVNREDTAANGSGFCYGEKERER 330

Query: 835  ---ILSHYVGTHNFHNFTTRIKAEDPSAVRFIISFNANSVVTVDGMDFVKCEVVGQSFML 1005
               IL  YVGTHNFHNFTTRIK EDPSA RFIISF+A++ V V+GM+FVKCE+VGQSFML
Sbjct: 331  FNNILKCYVGTHNFHNFTTRIKPEDPSAKRFIISFDASTTVVVEGMEFVKCEIVGQSFML 390

Query: 1006 HQIRKLVGLAVAIMRDCA 1059
            HQIRK++GLAVAIMR+CA
Sbjct: 391  HQIRKMMGLAVAIMRNCA 408