BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00005631
         (672 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002516489.1| RNA polymerase sigma factor rpoD, putative [...    97   4e-18
ref|XP_002308586.1| predicted protein [Populus trichocarpa] gi|2...    91   2e-16
emb|CAD20832.1| sigma factor [Spinacia oleracea]                       90   5e-16
ref|XP_004148429.1| PREDICTED: RNA polymerase sigma factor sigC-...    89   6e-16
ref|XP_003588449.1| RNA polymerase sigma-B factor [Medicago trun...    89   6e-16

>ref|XP_002516489.1| RNA polymerase sigma factor rpoD, putative [Ricinus communis]
           gi|223544309|gb|EEF45830.1| RNA polymerase sigma factor
           rpoD, putative [Ricinus communis]
          Length = 560

 Score = 96.7 bits (239), Expect = 4e-18
 Identities = 53/109 (48%), Positives = 69/109 (63%)
 Frame = -2

Query: 620 EFIVDTSIKCPEEVVMRQHMQKDLYELLQ*LHPRESWVLVLRFGLWDDQCKSLQEIAKIF 441
           EF+ DTS++ PEEVVMRQHM +D++ LL+ L  RE  VL+LRFGL D Q KSL+EI + F
Sbjct: 468 EFLPDTSVQSPEEVVMRQHMIQDMHNLLRSLDSRERQVLILRFGLNDYQPKSLEEIGRHF 527

Query: 440 KCTKEWIRKIEKSXXXXXXXXXXXXXXXXXALTKLRREEVQRNLSQYIN 294
             +KEW+R++EK                   +T+LR EE  RNL  YIN
Sbjct: 528 HVSKEWVRRLEK-----------------RVMTRLRNEETCRNLRHYIN 559


>ref|XP_002308586.1| predicted protein [Populus trichocarpa] gi|222854562|gb|EEE92109.1|
           predicted protein [Populus trichocarpa]
          Length = 559

 Score = 90.9 bits (224), Expect = 2e-16
 Identities = 51/110 (46%), Positives = 71/110 (64%)
 Frame = -2

Query: 620 EFIVDTSIKCPEEVVMRQHMQKDLYELLQ*LHPRESWVLVLRFGLWDDQCKSLQEIAKIF 441
           EFI D SI+ PEE VMRQHM++++Y+LL+ L  RE  V+VLR+G  D+Q KSL EI ++F
Sbjct: 467 EFIPDMSIQNPEEAVMRQHMREEIYDLLRGLDSREKQVMVLRYGFKDNQPKSLAEIGRLF 526

Query: 440 KCTKEWIRKIEKSXXXXXXXXXXXXXXXXXALTKLRREEVQRNLSQYINL 291
           + +KE +RKIEK                   + KLR E ++RNLS+Y+ L
Sbjct: 527 RVSKERVRKIEKK-----------------IMIKLRDEGIRRNLSRYMIL 559


>emb|CAD20832.1| sigma factor [Spinacia oleracea]
          Length = 548

 Score = 89.7 bits (221), Expect = 5e-16
 Identities = 48/106 (45%), Positives = 67/106 (63%)
 Frame = -2

Query: 608 DTSIKCPEEVVMRQHMQKDLYELLQ*LHPRESWVLVLRFGLWDDQCKSLQEIAKIFKCTK 429
           DT+++ PE+ VM+QHM+ D+++LLQ L P+E  VL+ R+GL +  C SL E+ K+F  +K
Sbjct: 461 DTALEMPEKTVMKQHMRNDVHKLLQELDPKERRVLIHRYGL-EGHCMSLHEVGKVFDVSK 519

Query: 428 EWIRKIEKSXXXXXXXXXXXXXXXXXALTKLRREEVQRNLSQYINL 291
           EWIRK+EK                  ALTKLR E+ Q NL  Y+NL
Sbjct: 520 EWIRKMEK-----------------RALTKLRTEQNQTNLKHYLNL 548


>ref|XP_004148429.1| PREDICTED: RNA polymerase sigma factor sigC-like [Cucumis sativus]
           gi|449507267|ref|XP_004162982.1| PREDICTED: RNA
           polymerase sigma factor sigC-like [Cucumis sativus]
          Length = 559

 Score = 89.4 bits (220), Expect = 6e-16
 Identities = 52/119 (43%), Positives = 70/119 (58%)
 Frame = -2

Query: 650 GDGWTSSLQ*EFIVDTSIKCPEEVVMRQHMQKDLYELLQ*LHPRESWVLVLRFGLWDDQC 471
           GDG       EF  D SI+ PEE V R+ M+KD++ +LQ L  RE  VLVLR+GL D + 
Sbjct: 459 GDGVNMKYM-EFTADMSIQSPEETVKRKLMKKDIFNILQRLESRERQVLVLRYGLVDFEP 517

Query: 470 KSLQEIAKIFKCTKEWIRKIEKSXXXXXXXXXXXXXXXXXALTKLRREEVQRNLSQYIN 294
           KSL+EI K+   +KEW+RKIEK                  A+TKL+ EE  ++LS Y++
Sbjct: 518 KSLEEIGKLLHISKEWVRKIEKK-----------------AMTKLKNEETVKHLSHYLD 559


>ref|XP_003588449.1| RNA polymerase sigma-B factor [Medicago truncatula]
           gi|355477497|gb|AES58700.1| RNA polymerase sigma-B
           factor [Medicago truncatula]
          Length = 549

 Score = 89.4 bits (220), Expect = 6e-16
 Identities = 52/107 (48%), Positives = 68/107 (63%), Gaps = 1/107 (0%)
 Frame = -2

Query: 608 DTSIKCPEEVVMRQHMQKDLYELLQ*LHPRESWVLVLRFGLWDD-QCKSLQEIAKIFKCT 432
           D SI+ PEE VM+QH++KD++++LQ L  RE  +++LRFGL DD Q KSL+ I KIFK +
Sbjct: 460 DLSIESPEETVMKQHIKKDIHDILQSLDSRERQIIILRFGLNDDHQPKSLEYIGKIFKVS 519

Query: 431 KEWIRKIEKSXXXXXXXXXXXXXXXXXALTKLRREEVQRNLSQYINL 291
           KEWIRKIEK                  ALTKLR E     L+ Y++L
Sbjct: 520 KEWIRKIEKK-----------------ALTKLRNETNISKLNYYLDL 549