BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00005573
         (1228 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002276984.1| PREDICTED: translation initiation factor IF-...   273   7e-71
ref|XP_002533227.1| translation initiation factor if-3, putative...   267   5e-69
ref|XP_002325123.1| predicted protein [Populus trichocarpa] gi|2...   264   4e-68
ref|XP_004144726.1| PREDICTED: translation initiation factor IF-...   260   6e-67
ref|XP_004163986.1| PREDICTED: LOW QUALITY PROTEIN: translation ...   258   3e-66

>ref|XP_002276984.1| PREDICTED: translation initiation factor IF-3 [Vitis vinifera]
           gi|297743667|emb|CBI36550.3| unnamed protein product
           [Vitis vinifera]
          Length = 272

 Score =  273 bits (698), Expect = 7e-71
 Identities = 141/210 (67%), Positives = 167/210 (79%)
 Frame = +2

Query: 293 ITARYGRPSFNRSRDSSRKRNEPAEADPAVDVSTIRSPSVRLIDAQQNMVGVVSKGEAIR 472
           +TARYG   +  S D+ R R   ++ D A+DVS+IRS SVRLID QQNMVGVVSK +AI+
Sbjct: 56  VTARYG--GYRSSGDAWRSRQRDSDDDQALDVSSIRSASVRLIDEQQNMVGVVSKSQAIQ 113

Query: 473 MAEEAELDLVILSPDADPPVVKIMDYNXXXXXXXXXXXXXXXXSSASRMDMKELKMGYNI 652
           MAE+AELDLV+LSPDADPPVV+IMDYN                S+A+RMD+KELKMGYNI
Sbjct: 114 MAEDAELDLVVLSPDADPPVVRIMDYNKYRYELQKKKRGQQKKSAANRMDLKELKMGYNI 173

Query: 653 DVHDYTVRLKAAQKFLNDGDKVKVIVQLKGRENEFRNIAIELIKRFQNDIGELGTEEAKN 832
           D HDY+VRLKAA+KFL DGDKVK+IV LKGRENEFRNIAIELI+RFQND+GEL TEE+KN
Sbjct: 174 DSHDYSVRLKAARKFLQDGDKVKIIVNLKGRENEFRNIAIELIRRFQNDVGELATEESKN 233

Query: 833 FRERNIFLVLLPNKAIQQRIQEQPKRKEKS 922
           F  RNIF+VL+PNKA+ Q+ QE  K+ EKS
Sbjct: 234 FSVRNIFIVLVPNKALLQKGQESSKKTEKS 263


>ref|XP_002533227.1| translation initiation factor if-3, putative [Ricinus communis]
           gi|223526947|gb|EEF29148.1| translation initiation
           factor if-3, putative [Ricinus communis]
          Length = 274

 Score =  267 bits (682), Expect = 5e-69
 Identities = 137/199 (68%), Positives = 156/199 (78%)
 Frame = +2

Query: 326 RSRDSSRKRNEPAEADPAVDVSTIRSPSVRLIDAQQNMVGVVSKGEAIRMAEEAELDLVI 505
           RS    R R   +E D A+D+STIRS +VRLID QQNMVGVV K EAI+MAE A LDLVI
Sbjct: 67  RSSGDRRSRQSDSEDDHALDISTIRSATVRLIDEQQNMVGVVPKSEAIQMAENAALDLVI 126

Query: 506 LSPDADPPVVKIMDYNXXXXXXXXXXXXXXXXSSASRMDMKELKMGYNIDVHDYTVRLKA 685
           LSPDADPPVV+IMDYN                S+A+RMD+KELKMGYNID HDY VRL+A
Sbjct: 127 LSPDADPPVVRIMDYNKYRYELQKKKKGQQKKSAATRMDLKELKMGYNIDQHDYDVRLRA 186

Query: 686 AQKFLNDGDKVKVIVQLKGRENEFRNIAIELIKRFQNDIGELGTEEAKNFRERNIFLVLL 865
           A+KFL DGDKVKVIV LKGRENEFRNIAIELI+RFQND+GEL TEE KNFR+RNIF+ L 
Sbjct: 187 ARKFLKDGDKVKVIVNLKGRENEFRNIAIELIRRFQNDVGELATEETKNFRDRNIFITLA 246

Query: 866 PNKAIQQRIQEQPKRKEKS 922
           PNKAI Q+ QE PK+++KS
Sbjct: 247 PNKAILQKSQEPPKKRDKS 265


>ref|XP_002325123.1| predicted protein [Populus trichocarpa] gi|222866557|gb|EEF03688.1|
           predicted protein [Populus trichocarpa]
          Length = 278

 Score =  264 bits (674), Expect = 4e-68
 Identities = 135/209 (64%), Positives = 165/209 (78%)
 Frame = +2

Query: 296 TARYGRPSFNRSRDSSRKRNEPAEADPAVDVSTIRSPSVRLIDAQQNMVGVVSKGEAIRM 475
           TAR+G P   RS DS R R   ++ D A+++S+IRS +VRLID QQNMVGVV+  +AI+M
Sbjct: 64  TARFGGP---RSYDSRRPRKSDSDDDQALNISSIRSATVRLIDQQQNMVGVVTVRDAIQM 120

Query: 476 AEEAELDLVILSPDADPPVVKIMDYNXXXXXXXXXXXXXXXXSSASRMDMKELKMGYNID 655
           AE+ EL+LVI+SPDADPPVV+IMDYN                S+ASRMD+KELKMGYNID
Sbjct: 121 AEDTELNLVIVSPDADPPVVRIMDYNKFRYEQQKKKRGQQKKSAASRMDLKELKMGYNID 180

Query: 656 VHDYTVRLKAAQKFLNDGDKVKVIVQLKGRENEFRNIAIELIKRFQNDIGELGTEEAKNF 835
            HDY VRL+AA+KFL DGDKVKVIV LKGRENEFRN AIEL++RFQND+GEL TEE+KNF
Sbjct: 181 QHDYDVRLRAARKFLKDGDKVKVIVNLKGRENEFRNNAIELLRRFQNDVGELATEESKNF 240

Query: 836 RERNIFLVLLPNKAIQQRIQEQPKRKEKS 922
           R+RN F+ L+PNKA+ Q+ QE PK+K+KS
Sbjct: 241 RDRNAFITLVPNKALLQKAQEPPKKKDKS 269


>ref|XP_004144726.1| PREDICTED: translation initiation factor IF-3-like [Cucumis
           sativus]
          Length = 299

 Score =  260 bits (664), Expect = 6e-67
 Identities = 133/204 (65%), Positives = 161/204 (78%)
 Frame = +2

Query: 308 GRPSFNRSRDSSRKRNEPAEADPAVDVSTIRSPSVRLIDAQQNMVGVVSKGEAIRMAEEA 487
           G P  +   DS R  +E       +D+S I+S +VRLIDA+QNMVGVVSK +AI+MAE+A
Sbjct: 91  GAPRSSGPPDSKRSNDEIG-----LDISAIKSINVRLIDAEQNMVGVVSKAQAIQMAEDA 145

Query: 488 ELDLVILSPDADPPVVKIMDYNXXXXXXXXXXXXXXXXSSASRMDMKELKMGYNIDVHDY 667
           ELDLV++SPDADPPVV+IMDYN                S+A+RMD+KELKMGYNID HDY
Sbjct: 146 ELDLVVVSPDADPPVVRIMDYNKYRYELQKKKRGQQKKSAATRMDLKELKMGYNIDQHDY 205

Query: 668 TVRLKAAQKFLNDGDKVKVIVQLKGRENEFRNIAIELIKRFQNDIGELGTEEAKNFRERN 847
           +VRLKAA+KFL DGDKVKVIV LKGRENEFRNIAIELI+RFQ ++GEL TEEAKNFR+RN
Sbjct: 206 SVRLKAAKKFLKDGDKVKVIVNLKGRENEFRNIAIELIRRFQEEVGELATEEAKNFRDRN 265

Query: 848 IFLVLLPNKAIQQRIQEQPKRKEK 919
           IF+VL+PNKA+ Q+ QE PK+K+K
Sbjct: 266 IFIVLVPNKAVLQKAQEPPKKKDK 289


>ref|XP_004163986.1| PREDICTED: LOW QUALITY PROTEIN: translation initiation factor
           IF-3-like [Cucumis sativus]
          Length = 299

 Score =  258 bits (658), Expect = 3e-66
 Identities = 132/204 (64%), Positives = 160/204 (78%)
 Frame = +2

Query: 308 GRPSFNRSRDSSRKRNEPAEADPAVDVSTIRSPSVRLIDAQQNMVGVVSKGEAIRMAEEA 487
           G P  +   DS R  +E       +D+S I+S +VRLIDA+QNMVGVVSK +AI+MAE+A
Sbjct: 91  GAPRSSGPPDSKRSNDEIG-----LDISAIKSINVRLIDAEQNMVGVVSKAQAIQMAEDA 145

Query: 488 ELDLVILSPDADPPVVKIMDYNXXXXXXXXXXXXXXXXSSASRMDMKELKMGYNIDVHDY 667
           ELDLV++SPDADPPVV+IMDYN                S+A+RMD+KELKMGYNID HDY
Sbjct: 146 ELDLVVVSPDADPPVVRIMDYNKYRYELQKKKRGQQKKSAATRMDLKELKMGYNIDQHDY 205

Query: 668 TVRLKAAQKFLNDGDKVKVIVQLKGRENEFRNIAIELIKRFQNDIGELGTEEAKNFRERN 847
           +VRLKAA+KFL DGDKVKVIV LKGRENEFRNIAIELI+RFQ ++GEL TEEAKNFR+RN
Sbjct: 206 SVRLKAAKKFLKDGDKVKVIVNLKGRENEFRNIAIELIRRFQEEVGELATEEAKNFRDRN 265

Query: 848 IFLVLLPNKAIQQRIQEQPKRKEK 919
           IF+VL+PNKA+ Q+ QE PK+ +K
Sbjct: 266 IFIVLVPNKAVLQKAQEPPKKXDK 289