BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00005539
         (346 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_193897.2| splicing factor 3B subunit 2 [Arabidopsis thali...    57   2e-06
ref|XP_002867835.1| hypothetical protein ARALYDRAFT_914502 [Arab...    57   2e-06
emb|CAB36810.1| spliceosome associated protein-like [Arabidopsis...    56   4e-06
ref|NP_001190789.1| splicing factor 3B subunit 2 [Arabidopsis th...    55   8e-06

>ref|NP_193897.2| splicing factor 3B subunit 2 [Arabidopsis thaliana]
           gi|25082966|gb|AAN72024.1| spliceosome associated
           protein - like [Arabidopsis thaliana]
           gi|34365737|gb|AAQ65180.1| At4g21660 [Arabidopsis
           thaliana] gi|332659086|gb|AEE84486.1| splicing factor 3B
           subunit 2 [Arabidopsis thaliana]
          Length = 584

 Score = 56.6 bits (135), Expect = 2e-06
 Identities = 26/29 (89%), Positives = 26/29 (89%)
 Frame = +3

Query: 258 YFGGKRGIEKQPFHLPDLIAATGIEKIRQ 344
           Y  GKRGIEKQPFHLPD IAATGIEKIRQ
Sbjct: 213 YLQGKRGIEKQPFHLPDFIAATGIEKIRQ 241


>ref|XP_002867835.1| hypothetical protein ARALYDRAFT_914502 [Arabidopsis lyrata subsp.
           lyrata] gi|297313671|gb|EFH44094.1| hypothetical protein
           ARALYDRAFT_914502 [Arabidopsis lyrata subsp. lyrata]
          Length = 584

 Score = 56.6 bits (135), Expect = 2e-06
 Identities = 26/29 (89%), Positives = 26/29 (89%)
 Frame = +3

Query: 258 YFGGKRGIEKQPFHLPDLIAATGIEKIRQ 344
           Y  GKRGIEKQPFHLPD IAATGIEKIRQ
Sbjct: 213 YLQGKRGIEKQPFHLPDFIAATGIEKIRQ 241


>emb|CAB36810.1| spliceosome associated protein-like [Arabidopsis thaliana]
           gi|7268963|emb|CAB81273.1| spliceosome associated
           protein-like [Arabidopsis thaliana]
          Length = 700

 Score = 55.8 bits (133), Expect = 4e-06
 Identities = 26/28 (92%), Positives = 26/28 (92%)
 Frame = +3

Query: 261 FGGKRGIEKQPFHLPDLIAATGIEKIRQ 344
           F GKRGIEKQPFHLPD IAATGIEKIRQ
Sbjct: 281 FVGKRGIEKQPFHLPDFIAATGIEKIRQ 308


>ref|NP_001190789.1| splicing factor 3B subunit 2 [Arabidopsis thaliana]
           gi|332659087|gb|AEE84487.1| splicing factor 3B subunit 2
           [Arabidopsis thaliana]
          Length = 598

 Score = 54.7 bits (130), Expect = 8e-06
 Identities = 25/26 (96%), Positives = 25/26 (96%)
 Frame = +3

Query: 267 GKRGIEKQPFHLPDLIAATGIEKIRQ 344
           GKRGIEKQPFHLPD IAATGIEKIRQ
Sbjct: 230 GKRGIEKQPFHLPDFIAATGIEKIRQ 255