BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00005530
         (1191 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002510741.1| U2 snrnp auxiliary factor, small subunit, pu...   250   4e-64
ref|XP_004145565.1| PREDICTED: splicing factor U2af small subuni...   250   6e-64
ref|XP_002276502.1| PREDICTED: splicing factor U2af small subuni...   249   1e-63
ref|XP_002300614.1| predicted protein [Populus trichocarpa] gi|2...   244   4e-62
ref|NP_174086.1| splicing factor U2af small subunit A [Arabidops...   241   2e-61

>ref|XP_002510741.1| U2 snrnp auxiliary factor, small subunit, putative [Ricinus communis]
            gi|223551442|gb|EEF52928.1| U2 snrnp auxiliary factor,
            small subunit, putative [Ricinus communis]
          Length = 272

 Score =  250 bits (639), Expect = 4e-64
 Identities = 133/191 (69%), Positives = 139/191 (72%), Gaps = 3/191 (1%)
 Frame = -1

Query: 1053 LSPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQXXXXXXXXXXXXELHKFGEIESLNIC 874
            +SPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQ            EL KFGEIESLN+C
Sbjct: 42   ISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIFEELGKFGEIESLNVC 101

Query: 873  DNLADHMVGNVYVQFTEEDQAAAALKALQGHFYSGSPIIADFSPVTDFREATCRQFEENN 694
            DNLADHM+GNVYVQF EEDQAAAAL+ALQG FYSG PIIADFSPVTDFREATCRQFEENN
Sbjct: 102  DNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQFEENN 161

Query: 693  CNRGGYYNFMHVKQIGRDLRKKLYGXXXXXXXXXXXXXXXXXXXXXXXSEG---IGDYRD 523
            CNRGGY NFMHVK IGRDLR+KL+G                               DYRD
Sbjct: 162  CNRGGYCNFMHVKLIGRDLRRKLFGRYRGYRASRSRSRSVSPSRHRREKSNDRRERDYRD 221

Query: 522  RGDYYGNCRRS 490
            R DY GN RRS
Sbjct: 222  R-DYRGNGRRS 231


>ref|XP_004145565.1| PREDICTED: splicing factor U2af small subunit B-like [Cucumis
            sativus] gi|449485076|ref|XP_004157064.1| PREDICTED:
            splicing factor U2af small subunit B-like [Cucumis
            sativus]
          Length = 276

 Score =  250 bits (638), Expect = 6e-64
 Identities = 129/186 (69%), Positives = 137/186 (73%)
 Frame = -1

Query: 1053 LSPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQXXXXXXXXXXXXELHKFGEIESLNIC 874
            +SPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQ            EL KFGEIESLN+C
Sbjct: 42   ISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNVC 101

Query: 873  DNLADHMVGNVYVQFTEEDQAAAALKALQGHFYSGSPIIADFSPVTDFREATCRQFEENN 694
            DNLADHM+GNVYVQF EEDQAAAAL+ALQG FYSG PIIADFSPVTDFREATCRQ+EENN
Sbjct: 102  DNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENN 161

Query: 693  CNRGGYYNFMHVKQIGRDLRKKLYGXXXXXXXXXXXXXXXXXXXXXXXSEGIGDYRDRGD 514
            CNRGGY NFMHVK IG+DLR+KL+G                            DYRDR D
Sbjct: 162  CNRGGYCNFMHVKMIGKDLRRKLFGRYRGYRASRSRSRSLSPRNRKEHDRRERDYRDR-D 220

Query: 513  YYGNCR 496
            Y GN R
Sbjct: 221  YRGNGR 226


>ref|XP_002276502.1| PREDICTED: splicing factor U2af small subunit B isoform 1 [Vitis
            vinifera] gi|359491881|ref|XP_003634337.1| PREDICTED:
            splicing factor U2af small subunit B isoform 2 [Vitis
            vinifera]
          Length = 272

 Score =  249 bits (635), Expect = 1e-63
 Identities = 130/188 (69%), Positives = 137/188 (72%)
 Frame = -1

Query: 1053 LSPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQXXXXXXXXXXXXELHKFGEIESLNIC 874
            +SPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQ            EL KFGEIESLN+C
Sbjct: 42   ISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIFEELGKFGEIESLNVC 101

Query: 873  DNLADHMVGNVYVQFTEEDQAAAALKALQGHFYSGSPIIADFSPVTDFREATCRQFEENN 694
            DNLADHM+GNVYVQF EE+QAAAAL+ALQG FYSG PIIADFSPVTDFREATCRQFEENN
Sbjct: 102  DNLADHMIGNVYVQFKEEEQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQFEENN 161

Query: 693  CNRGGYYNFMHVKQIGRDLRKKLYGXXXXXXXXXXXXXXXXXXXXXXXSEGIGDYRDRGD 514
            CNRGGY NFMHVK IGRDLR+KL+G                               DRGD
Sbjct: 162  CNRGGYCNFMHVKLIGRDLRRKLFGRYSGYGRSRSRSRSLSPRYRRDSDRRRSG--DRGD 219

Query: 513  YYGNCRRS 490
            Y GN RRS
Sbjct: 220  YRGNGRRS 227


>ref|XP_002300614.1| predicted protein [Populus trichocarpa] gi|222842340|gb|EEE79887.1|
            predicted protein [Populus trichocarpa]
          Length = 273

 Score =  244 bits (622), Expect = 4e-62
 Identities = 129/194 (66%), Positives = 139/194 (71%), Gaps = 6/194 (3%)
 Frame = -1

Query: 1053 LSPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQXXXXXXXXXXXXELHKFGEIESLNIC 874
            +SPTLLLSNMYQRPDMITPGVDAQGQP+DP KIQ            EL+KFGEIESLN+C
Sbjct: 42   ISPTLLLSNMYQRPDMITPGVDAQGQPLDPHKIQEHFEEFYEDIFEELNKFGEIESLNVC 101

Query: 873  DNLADHMVGNVYVQFTEEDQAAAALKALQGHFYSGSPIIADFSPVTDFREATCRQFEENN 694
            DNLADHM+GNVYV F EEDQAAAAL+ALQG FYSG PIIADFSPVTDFREATCRQFEENN
Sbjct: 102  DNLADHMIGNVYVLFKEEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQFEENN 161

Query: 693  CNRGGYYNFMHVKQIGRDLRKKLYGXXXXXXXXXXXXXXXXXXXXXXXSE-GIGDYRDRG 517
            CNRGGY NFMHVK IGRDLR+KL+G                        +    DYRDR 
Sbjct: 162  CNRGGYCNFMHVKLIGRDLRRKLFGRYRGYRVSRSRSRSVSPRKRERDYDRRERDYRDRD 221

Query: 516  -----DYYGNCRRS 490
                 DY GN RR+
Sbjct: 222  RDRDRDYRGNGRRN 235


>ref|NP_174086.1| splicing factor U2af small subunit A [Arabidopsis thaliana]
            gi|75336807|sp|Q9S709.1|U2AFA_ARATH RecName:
            Full=Splicing factor U2af small subunit A; AltName:
            Full=U2 auxiliary factor 35 kDa subunit A; AltName:
            Full=U2 small nuclear ribonucleoprotein auxiliary factor
            small subunit A; Short=U2 snRNP auxiliary factor small
            subunit A; AltName: Full=Zinc finger CCCH
            domain-containing protein 8; Short=AtC3H8
            gi|5668775|gb|AAD46002.1|AC005916_14 Strong similarity to
            gb|Y18349 U2 snRNP auxiliary factor, small subunit from
            Oryza sativa. ESTs gb|AA586295 and gb|AA597332 come from
            this gene [Arabidopsis thaliana]
            gi|6693017|gb|AAF24943.1|AC012375_6 T22C5.10 [Arabidopsis
            thaliana] gi|12744991|gb|AAK06875.1|AF344324_1 putative
            U2 snRNP auxiliary factor [Arabidopsis thaliana]
            gi|17528936|gb|AAL38678.1| putative U2 snRNP auxiliary
            factor [Arabidopsis thaliana] gi|19699275|gb|AAL91249.1|
            At1g27650/T22C5_2 [Arabidopsis thaliana]
            gi|20465943|gb|AAM20157.1| putative U2 snRNP auxiliary
            factor protein [Arabidopsis thaliana]
            gi|21595106|gb|AAM66073.1| putative U2 snRNP auxiliary
            factor [Arabidopsis thaliana] gi|21689611|gb|AAM67427.1|
            At1g27650/T22C5_2 [Arabidopsis thaliana]
            gi|332192737|gb|AEE30858.1| splicing factor U2af small
            subunit A [Arabidopsis thaliana]
          Length = 296

 Score =  241 bits (616), Expect = 2e-61
 Identities = 117/145 (80%), Positives = 126/145 (86%)
 Frame = -1

Query: 1053 LSPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQXXXXXXXXXXXXELHKFGEIESLNIC 874
            +SPTLLLSNMYQRPDMITPGVDAQGQP+DPRKIQ            EL KFGEIESLNIC
Sbjct: 42   ISPTLLLSNMYQRPDMITPGVDAQGQPLDPRKIQEHFEDFFEDLFEELGKFGEIESLNIC 101

Query: 873  DNLADHMVGNVYVQFTEEDQAAAALKALQGHFYSGSPIIADFSPVTDFREATCRQFEENN 694
            DNLADHM+GNVYVQF EEDQAAAAL+ALQG FYSG PIIADFSPVTDFREATCRQ+EENN
Sbjct: 102  DNLADHMIGNVYVQFKEEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENN 161

Query: 693  CNRGGYYNFMHVKQIGRDLRKKLYG 619
            CNRGGY NFMHVK + R+LR+KL+G
Sbjct: 162  CNRGGYCNFMHVKLVSRELRRKLFG 186