BLASTX nr result

ID: Coptis25_contig00005517 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00005517
         (391 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002513776.1| conserved hypothetical protein [Ricinus comm...    77   2e-12
emb|CBI19055.3| unnamed protein product [Vitis vinifera]               76   2e-12
ref|XP_002285840.1| PREDICTED: selenoprotein K [Vitis vinifera] ...    76   2e-12
ref|XP_002307425.1| predicted protein [Populus trichocarpa] gi|1...    75   5e-12
ref|XP_004140863.1| PREDICTED: selenoprotein K-like [Cucumis sat...    74   9e-12

>ref|XP_002513776.1| conserved hypothetical protein [Ricinus communis]
           gi|223546862|gb|EEF48359.1| conserved hypothetical
           protein [Ricinus communis]
          Length = 100

 Score = 76.6 bits (187), Expect = 2e-12
 Identities = 40/76 (52%), Positives = 47/76 (61%), Gaps = 3/76 (3%)
 Frame = -3

Query: 389 SIINFIRIFFGTLFSVDKSDAYKK---SGKKWDXXXXXXXXXXXXXXXXXXXXXXGMDNV 219
           +IINFI +FF T+FS++KSDAY+K   S KKWD                       +DNV
Sbjct: 27  AIINFIGVFFSTMFSMEKSDAYRKGSGSSKKWDGGPGGPGSGPYGGGPRGPPRG--LDNV 84

Query: 218 RGIDHSSLPACGSCCG 171
           RGIDHSSLPACGSCCG
Sbjct: 85  RGIDHSSLPACGSCCG 100


>emb|CBI19055.3| unnamed protein product [Vitis vinifera]
          Length = 111

 Score = 76.3 bits (186), Expect = 2e-12
 Identities = 39/76 (51%), Positives = 48/76 (63%), Gaps = 3/76 (3%)
 Frame = -3

Query: 389 SIINFIRIFFGTLFSVDKSDAYKKS---GKKWDXXXXXXXXXXXXXXXXXXXXXXGMDNV 219
           +I+NFI +FF T+FS++KSDAY+KS   GKKWD                       +DNV
Sbjct: 36  AIVNFIGVFFVTMFSMEKSDAYRKSSGSGKKWDGGGPGGPGRGPYGGGPRGPPRG-LDNV 94

Query: 218 RGIDHSSLPACGSCCG 171
           RGIDHS+LPACGSCCG
Sbjct: 95  RGIDHSALPACGSCCG 110


>ref|XP_002285840.1| PREDICTED: selenoprotein K [Vitis vinifera]
           gi|147801093|emb|CAN71044.1| hypothetical protein
           VITISV_015657 [Vitis vinifera]
          Length = 102

 Score = 76.3 bits (186), Expect = 2e-12
 Identities = 39/76 (51%), Positives = 48/76 (63%), Gaps = 3/76 (3%)
 Frame = -3

Query: 389 SIINFIRIFFGTLFSVDKSDAYKKS---GKKWDXXXXXXXXXXXXXXXXXXXXXXGMDNV 219
           +I+NFI +FF T+FS++KSDAY+KS   GKKWD                       +DNV
Sbjct: 27  AIVNFIGVFFVTMFSMEKSDAYRKSSGSGKKWDGGGPGGPGRGPYGGGPRGPPRG-LDNV 85

Query: 218 RGIDHSSLPACGSCCG 171
           RGIDHS+LPACGSCCG
Sbjct: 86  RGIDHSALPACGSCCG 101


>ref|XP_002307425.1| predicted protein [Populus trichocarpa] gi|118485451|gb|ABK94582.1|
           unknown [Populus trichocarpa]
           gi|222856874|gb|EEE94421.1| predicted protein [Populus
           trichocarpa]
          Length = 100

 Score = 75.1 bits (183), Expect = 5e-12
 Identities = 38/76 (50%), Positives = 47/76 (61%), Gaps = 3/76 (3%)
 Frame = -3

Query: 389 SIINFIRIFFGTLFSVDKSDAYKK---SGKKWDXXXXXXXXXXXXXXXXXXXXXXGMDNV 219
           +I+NFI +FF T+FS++K+DAY+K   S KKWD                       +DNV
Sbjct: 27  AIVNFIGVFFSTMFSMEKTDAYRKGSGSSKKWDGGPGGPGSGPYGGGPRGPPRG--LDNV 84

Query: 218 RGIDHSSLPACGSCCG 171
           RGIDHSSLPACGSCCG
Sbjct: 85  RGIDHSSLPACGSCCG 100


>ref|XP_004140863.1| PREDICTED: selenoprotein K-like [Cucumis sativus]
           gi|449522556|ref|XP_004168292.1| PREDICTED:
           selenoprotein K-like [Cucumis sativus]
          Length = 101

 Score = 74.3 bits (181), Expect = 9e-12
 Identities = 39/76 (51%), Positives = 47/76 (61%), Gaps = 3/76 (3%)
 Frame = -3

Query: 389 SIINFIRIFFGTLFSVDKSDAYKK---SGKKWDXXXXXXXXXXXXXXXXXXXXXXGMDNV 219
           +I+N I +FF TLFS++KS+AY+K   SGKKWD                       +DNV
Sbjct: 27  AIVNVIGVFFTTLFSMEKSEAYRKGSGSGKKWDGGGPGGPGSGPYGGRPRGPPRG-LDNV 85

Query: 218 RGIDHSSLPACGSCCG 171
           RGIDHSSLPACGSCCG
Sbjct: 86  RGIDHSSLPACGSCCG 101


Top