BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00005494
         (1450 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002531352.1| ribosomal RNA methyltransferase, putative [R...   603   e-170
ref|XP_002278921.1| PREDICTED: putative ribosomal RNA methyltran...   597   e-168
ref|XP_002325916.1| predicted protein [Populus trichocarpa] gi|2...   594   e-167
ref|XP_003545938.1| PREDICTED: putative ribosomal RNA methyltran...   593   e-167
ref|XP_003593568.1| rRNA methyltransferase-like protein [Medicag...   592   e-166

>ref|XP_002531352.1| ribosomal RNA methyltransferase, putative [Ricinus communis]
            gi|223529050|gb|EEF31036.1| ribosomal RNA
            methyltransferase, putative [Ricinus communis]
          Length = 316

 Score =  603 bits (1555), Expect = e-170
 Identities = 294/316 (93%), Positives = 309/316 (97%)
 Frame = -2

Query: 1275 MGKASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFQGVKHVVDLCAAPGSWSQVLS 1096
            MGKASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIF+GVK VVDLCAAPGSWSQVLS
Sbjct: 1    MGKASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLS 60

Query: 1095 RKIYLPAKLSPEQRDEDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIKHFDGCKA 916
            RK+YLPAKL+ + RD++LPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVI+HFDGCKA
Sbjct: 61   RKLYLPAKLTQDSRDDNLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKA 120

Query: 915  DLVVCDGAPDVTGLHDMDEFVQSQLILAGLTIVSHILRVGGKFIAKIFRGKDTSLLYCQL 736
            DLVVCDGAPDVTGLHDMDEFVQSQLILAGLTIV+HILR GGKFIAKIFRGKDTSLLYCQL
Sbjct: 121  DLVVCDGAPDVTGLHDMDEFVQSQLILAGLTIVTHILREGGKFIAKIFRGKDTSLLYCQL 180

Query: 735  KLFFSVVTFAKPKSSRNSSIEAFAVCENYSPPEGFNPEDLHRLLEKVGSPTGVDDLDCSS 556
            KLFF VVTFAKPKSSRNSSIEAFAVCENYSPPEGFNP+DLHRLLEKVGSP+G+DDLDCSS
Sbjct: 181  KLFFPVVTFAKPKSSRNSSIEAFAVCENYSPPEGFNPKDLHRLLEKVGSPSGMDDLDCSS 240

Query: 555  GWLEGPNKVYIPFLACGDLSGFDSDRSYPLPKVADGTYQSLDPVQPPIAPPYKRALEMKK 376
            GWLEGPNKVYIPFLACGDLSG+DSDRSYPLPKVA+GTYQSLDPVQPPIAPPYKRALEMKK
Sbjct: 241  GWLEGPNKVYIPFLACGDLSGYDSDRSYPLPKVAEGTYQSLDPVQPPIAPPYKRALEMKK 300

Query: 375  ASSHGVSELEKLSLDS 328
            AS+ G+ ELEKLSLDS
Sbjct: 301  ASNRGIRELEKLSLDS 316


>ref|XP_002278921.1| PREDICTED: putative ribosomal RNA methyltransferase 1 [Vitis
            vinifera] gi|297740237|emb|CBI30419.3| unnamed protein
            product [Vitis vinifera]
          Length = 316

 Score =  597 bits (1539), Expect = e-168
 Identities = 289/316 (91%), Positives = 306/316 (96%)
 Frame = -2

Query: 1275 MGKASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFQGVKHVVDLCAAPGSWSQVLS 1096
            MGKASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIF+GVK VVDLCAAPGSWSQVLS
Sbjct: 1    MGKASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLS 60

Query: 1095 RKIYLPAKLSPEQRDEDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIKHFDGCKA 916
            RK++LPAKLSP  RD DLPLIVAIDLQPMAPIEGVIQVQGDITNARTAE+VI+HFDGCKA
Sbjct: 61   RKLFLPAKLSPASRDGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAELVIRHFDGCKA 120

Query: 915  DLVVCDGAPDVTGLHDMDEFVQSQLILAGLTIVSHILRVGGKFIAKIFRGKDTSLLYCQL 736
            DLVVCDGAPDVTGLHDMDEFVQSQLILAGLTIV+H+L+ GGKFIAKIFRGKDTSLLYCQL
Sbjct: 121  DLVVCDGAPDVTGLHDMDEFVQSQLILAGLTIVTHVLKKGGKFIAKIFRGKDTSLLYCQL 180

Query: 735  KLFFSVVTFAKPKSSRNSSIEAFAVCENYSPPEGFNPEDLHRLLEKVGSPTGVDDLDCSS 556
            KLFF +VTFAKPKSSRNSSIEAFAVCENYSPPEGFN +DLHRLLEKVGSP+G DDLDC S
Sbjct: 181  KLFFPIVTFAKPKSSRNSSIEAFAVCENYSPPEGFNEKDLHRLLEKVGSPSGADDLDCRS 240

Query: 555  GWLEGPNKVYIPFLACGDLSGFDSDRSYPLPKVADGTYQSLDPVQPPIAPPYKRALEMKK 376
            GWLEGPNKVYIPFLACGDLSG+DSD+SYPLPKVA+GTYQSLDPVQPPIAPPYKRALE+KK
Sbjct: 241  GWLEGPNKVYIPFLACGDLSGYDSDQSYPLPKVAEGTYQSLDPVQPPIAPPYKRALELKK 300

Query: 375  ASSHGVSELEKLSLDS 328
            ASSHG+ ELE+LSLDS
Sbjct: 301  ASSHGIRELERLSLDS 316


>ref|XP_002325916.1| predicted protein [Populus trichocarpa] gi|222862791|gb|EEF00298.1|
            predicted protein [Populus trichocarpa]
          Length = 316

 Score =  594 bits (1531), Expect = e-167
 Identities = 291/316 (92%), Positives = 305/316 (96%)
 Frame = -2

Query: 1275 MGKASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFQGVKHVVDLCAAPGSWSQVLS 1096
            MG+ASRDKRDIYYRKAKEEGWRARSAFKL+QIDEEFNIF+GVK VVDLCAAPGSWSQVLS
Sbjct: 1    MGRASRDKRDIYYRKAKEEGWRARSAFKLIQIDEEFNIFEGVKRVVDLCAAPGSWSQVLS 60

Query: 1095 RKIYLPAKLSPEQRDEDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIKHFDGCKA 916
            RK+YLPAKLSP+ RD DLPLIVAIDLQPMA IEGVIQVQGDITNARTAEVVI+HFDG KA
Sbjct: 61   RKLYLPAKLSPDSRDNDLPLIVAIDLQPMALIEGVIQVQGDITNARTAEVVIRHFDGSKA 120

Query: 915  DLVVCDGAPDVTGLHDMDEFVQSQLILAGLTIVSHILRVGGKFIAKIFRGKDTSLLYCQL 736
            DLVVCDGAPDVTGLHDMDEFVQSQLILAGLTIV+H+L+ GGKFIAKIFRGKDTSLLYCQL
Sbjct: 121  DLVVCDGAPDVTGLHDMDEFVQSQLILAGLTIVTHVLKEGGKFIAKIFRGKDTSLLYCQL 180

Query: 735  KLFFSVVTFAKPKSSRNSSIEAFAVCENYSPPEGFNPEDLHRLLEKVGSPTGVDDLDCSS 556
            KLFF VVTFAKPKSSRNSSIEAFAVCENYSPPEGF+P+DLHRLLEKVGSP+G DDLDCSS
Sbjct: 181  KLFFPVVTFAKPKSSRNSSIEAFAVCENYSPPEGFDPKDLHRLLEKVGSPSGADDLDCSS 240

Query: 555  GWLEGPNKVYIPFLACGDLSGFDSDRSYPLPKVADGTYQSLDPVQPPIAPPYKRALEMKK 376
            GWLEG +KVYIPFLACGDLSG+DSDRSYPLPK ADGTYQSLDPVQPPIAPPYKRALEMKK
Sbjct: 241  GWLEGASKVYIPFLACGDLSGYDSDRSYPLPKDADGTYQSLDPVQPPIAPPYKRALEMKK 300

Query: 375  ASSHGVSELEKLSLDS 328
            ASSHGV ELEKLSLDS
Sbjct: 301  ASSHGVKELEKLSLDS 316


>ref|XP_003545938.1| PREDICTED: putative ribosomal RNA methyltransferase 1-like [Glycine
            max]
          Length = 316

 Score =  593 bits (1530), Expect = e-167
 Identities = 288/316 (91%), Positives = 304/316 (96%)
 Frame = -2

Query: 1275 MGKASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFQGVKHVVDLCAAPGSWSQVLS 1096
            MG+ASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFN+F GVK VVDLCAAPGSWSQVLS
Sbjct: 1    MGRASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNLFDGVKRVVDLCAAPGSWSQVLS 60

Query: 1095 RKIYLPAKLSPEQRDEDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIKHFDGCKA 916
            RK+YLPAKL+P+ +DE+LPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVI+HFDGCKA
Sbjct: 61   RKLYLPAKLAPDAKDENLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKA 120

Query: 915  DLVVCDGAPDVTGLHDMDEFVQSQLILAGLTIVSHILRVGGKFIAKIFRGKDTSLLYCQL 736
            DLVVCDGAPDVTGLHDMDEFVQSQL+LAGLTIV+H+L+ GGKFIAKIFRGKDTSLLYCQL
Sbjct: 121  DLVVCDGAPDVTGLHDMDEFVQSQLLLAGLTIVTHVLKEGGKFIAKIFRGKDTSLLYCQL 180

Query: 735  KLFFSVVTFAKPKSSRNSSIEAFAVCENYSPPEGFNPEDLHRLLEKVGSPTGVDDLDCSS 556
            KLFF VVTFAKPKSSRNSSIEAFAVCENYSPPEGFNP+DLHRLLEKVGSP+GVDD DC S
Sbjct: 181  KLFFPVVTFAKPKSSRNSSIEAFAVCENYSPPEGFNPKDLHRLLEKVGSPSGVDDTDCCS 240

Query: 555  GWLEGPNKVYIPFLACGDLSGFDSDRSYPLPKVADGTYQSLDPVQPPIAPPYKRALEMKK 376
            GWLEGPNKVYIPFLACGDLSG+DSDRSYPLPKVA GTYQSLDPVQPPIAPPYKRALE+KK
Sbjct: 241  GWLEGPNKVYIPFLACGDLSGYDSDRSYPLPKVAGGTYQSLDPVQPPIAPPYKRALELKK 300

Query: 375  ASSHGVSELEKLSLDS 328
            ASS G  ELE LSLDS
Sbjct: 301  ASSQGFRELENLSLDS 316


>ref|XP_003593568.1| rRNA methyltransferase-like protein [Medicago truncatula]
            gi|355482616|gb|AES63819.1| rRNA methyltransferase-like
            protein [Medicago truncatula]
          Length = 316

 Score =  592 bits (1525), Expect = e-166
 Identities = 288/316 (91%), Positives = 304/316 (96%)
 Frame = -2

Query: 1275 MGKASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFQGVKHVVDLCAAPGSWSQVLS 1096
            MGKASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIF+GVK VVDLCAAPGSWSQVLS
Sbjct: 1    MGKASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLS 60

Query: 1095 RKIYLPAKLSPEQRDEDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIKHFDGCKA 916
            RK+YLPAKL+P+ +DE+LPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVI+HFDGCKA
Sbjct: 61   RKLYLPAKLAPDAKDENLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKA 120

Query: 915  DLVVCDGAPDVTGLHDMDEFVQSQLILAGLTIVSHILRVGGKFIAKIFRGKDTSLLYCQL 736
            +LVVCDGAPDVTGLHDMDEFVQSQLILAGLTIV+H+L+ GGKFIAKIFRGKDTSLLYCQL
Sbjct: 121  NLVVCDGAPDVTGLHDMDEFVQSQLILAGLTIVTHVLKEGGKFIAKIFRGKDTSLLYCQL 180

Query: 735  KLFFSVVTFAKPKSSRNSSIEAFAVCENYSPPEGFNPEDLHRLLEKVGSPTGVDDLDCSS 556
            KLFF VVTFAKPKSSRNSSIEAFAVCENYSPPEGFNP+DLHRLLEKVGSP+GVDD DC S
Sbjct: 181  KLFFPVVTFAKPKSSRNSSIEAFAVCENYSPPEGFNPKDLHRLLEKVGSPSGVDDTDCVS 240

Query: 555  GWLEGPNKVYIPFLACGDLSGFDSDRSYPLPKVADGTYQSLDPVQPPIAPPYKRALEMKK 376
            GWLEGPNKVYIPFLACGDL+G+DSDRSYPLPKVA GTYQSLDPVQPPIAPPYKRALE+KK
Sbjct: 241  GWLEGPNKVYIPFLACGDLTGYDSDRSYPLPKVAGGTYQSLDPVQPPIAPPYKRALELKK 300

Query: 375  ASSHGVSELEKLSLDS 328
            AS  G  ELE LSLDS
Sbjct: 301  ASPQGFRELENLSLDS 316