BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00005493
         (841 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002279526.2| PREDICTED: LOW QUALITY PROTEIN: F-box protei...   118   2e-24
ref|XP_002528428.1| conserved hypothetical protein [Ricinus comm...   102   1e-19
ref|XP_002305539.1| f-box family protein [Populus trichocarpa] g...   100   3e-19
ref|XP_002313690.1| f-box family protein [Populus trichocarpa] g...   100   7e-19
ref|XP_002278547.2| PREDICTED: F-box protein SKIP23-like [Vitis ...    99   9e-19

>ref|XP_002279526.2| PREDICTED: LOW QUALITY PROTEIN: F-box protein SKIP23-like [Vitis
           vinifera]
          Length = 387

 Score =  118 bits (295), Expect = 2e-24
 Identities = 80/228 (35%), Positives = 114/228 (50%), Gaps = 9/228 (3%)
 Frame = +1

Query: 127 KFGYFKCGYVTWTDFVIKDHEASFDDLIHYKGQFIVVDSTGQTFVLDPYTLSSTTLANRV 306
           K   F+ G   W   +I D ++ +DD+I + G+F  VD+TG+T V+D    SS  +    
Sbjct: 180 KLAMFRSGDKKW--MIIDDMQSPYDDVIFFDGKFYAVDNTGRTVVVDVADGSSPVV---- 233

Query: 307 VKRYEEEQMKQFRETNCVPIIYVDSRRHLIISNKQLFLVDIYVEEHGPNWPCDSHGQCM- 483
                               ++   ++ L+ S  +L LVD Y   +  +   D H + M 
Sbjct: 234 --------------NLAASSVFGGDKKVLVESEGELLLVDTYFTMYHDD---DEHVRWMI 276

Query: 484 --PIDCKVFVLDEEQQQWVPVESLGDRVFLLSPQGSYSISALDFPGCKGNRIFFTDYEFS 657
              I  KVF LD+ +Q+WV +ESLGDR+  L    S+S  A DF GCKGN I FT+  F 
Sbjct: 277 ERMIHFKVFRLDQREQKWVEIESLGDRLLFLGDDSSFSARASDFYGCKGNSICFTNISFF 336

Query: 658 LDRGKDTFSHN--IGVFDLKDGTFEELVDSSYLLF----WPPPTWIST 783
            D  +D  S +  IGVFDL  G+   L  SSY  +    WPPP W+S+
Sbjct: 337 SDAEEDDASRSGTIGVFDLDSGSIGPL--SSYANYSKTIWPPPAWVSS 382


>ref|XP_002528428.1| conserved hypothetical protein [Ricinus communis]
           gi|223532164|gb|EEF33970.1| conserved hypothetical
           protein [Ricinus communis]
          Length = 339

 Score =  102 bits (253), Expect = 1e-19
 Identities = 81/238 (34%), Positives = 113/238 (47%), Gaps = 21/238 (8%)
 Frame = +1

Query: 127 KFGYFKCGYVTWTDFVIKDHEASFDDLIHYKGQFIVVDSTGQTFVLDPYTLSSTTLANRV 306
           K   FK G   WT  +I+D  + +DD+I YKG F  VD+TG+T ++   T     +AN V
Sbjct: 122 KLAMFKSGDRRWT--IIQDMPSPYDDVIVYKGNFYAVDNTGRTVIVRLNT-ELGLIANPV 178

Query: 307 VKRYEEEQMKQFRETNCVPIIYVDSRRHLIISNKQLFLVDIYVE----EHGPNWP---CD 465
                                +   +++L+ S   L LVD+Y+     E G ++     +
Sbjct: 179 ---------------------FGGDKKYLVESLGDLLLVDMYLSIDTAEGGLSFGEEFLE 217

Query: 466 SHGQCM---PIDCKVFVLDEEQQQWVPVESLGDRVFLLSPQGSYSISALDFPGCKGNRIF 636
              Q M    +  KVF LD+E Q W+ V+SLGDRV  L    ++S S  D  GCKGN IF
Sbjct: 218 HLAQYMSERTVRFKVFKLDKEAQTWIEVKSLGDRVLFLGDDSTFSASVSDLSGCKGNCIF 277

Query: 637 FTD-YEFSLDR------GKD--TFSHNIGVFDLKDGTFEEL--VDSSYLLFWPPPTWI 777
           F D + +S D       G D      +IGVFDL+ G    L        +FWPPP W+
Sbjct: 278 FVDNFFYSRDENLRANGGDDGVLAGRDIGVFDLETGCIGPLGNYPEYAKMFWPPPHWL 335


>ref|XP_002305539.1| f-box family protein [Populus trichocarpa]
           gi|222848503|gb|EEE86050.1| f-box family protein
           [Populus trichocarpa]
          Length = 469

 Score =  100 bits (250), Expect = 3e-19
 Identities = 74/234 (31%), Positives = 108/234 (46%), Gaps = 15/234 (6%)
 Frame = +1

Query: 127 KFGYFKCGYVTWTDFVIKDHEASFDDLIHYKGQFIVVDSTGQTFVLDPYTLSSTTLANRV 306
           K   FK G   WT  +I +  + FDD+I YKG+F  VD+TG+T V+   T +   + N V
Sbjct: 184 KLAIFKSGDKRWT--IINEMPSPFDDVIVYKGRFYAVDNTGRTVVVAMDT-NLGLVGNPV 240

Query: 307 VKRYEEEQMKQFRETNCVPIIYVDSRRHLIISNKQLFLVDIYVEEHGPNWPCDSHGQCMP 486
                                +   +++L+ S   L LVD+Y+           H     
Sbjct: 241 ---------------------FGGDKKYLVESKGDLLLVDMYLSIDSDEGLSIGHDVVQD 279

Query: 487 ID---------CKVFVLDEEQQQWVPVESLGDRVFLLSPQGSYSISALDFPGCKGNRIFF 639
           +           KVF L+EE + W+ V  L DRV  L    ++S SA +  GCKGN IFF
Sbjct: 280 LVQYMSERTVWFKVFKLNEEGKCWIEVNDLEDRVLFLGDDLTFSASASELSGCKGNCIFF 339

Query: 640 TDYEFSLDRGK----DTFSHNIGVFDLKDGTFEEL--VDSSYLLFWPPPTWIST 783
            D +F   RG+      F  +IGVF+L+ G    L     +  +FWPPP W+++
Sbjct: 340 ND-DFFYSRGEGDDGSLFGRDIGVFELESGCIGPLRNFPDNSKMFWPPPDWVAS 392


>ref|XP_002313690.1| f-box family protein [Populus trichocarpa]
           gi|222850098|gb|EEE87645.1| f-box family protein
           [Populus trichocarpa]
          Length = 410

 Score = 99.8 bits (247), Expect = 7e-19
 Identities = 74/234 (31%), Positives = 112/234 (47%), Gaps = 15/234 (6%)
 Frame = +1

Query: 127 KFGYFKCGYVTWTDFVIKDHEASFDDLIHYKGQFIVVDSTGQTFVLDPYTLSSTTLANRV 306
           K   FK G   WT  +I +  + FDD+I YKG+F  VD+TG+T V+   T          
Sbjct: 184 KLAMFKSGDKRWT--IINEMPSPFDDVIVYKGRFYAVDNTGRTVVVALDT---------- 231

Query: 307 VKRYEEEQMKQFRETNCV-PIIYVDSRRHLIISNKQLFLVDIYVE---EHGPNWPCD--- 465
                        +   V   ++   +++L+ S   L LVD+Y+    + G +   D   
Sbjct: 232 -------------DLGLVGDPVFGGDKKYLVESKGDLLLVDMYLSIDTDEGLSIGNDVVQ 278

Query: 466 ---SHGQCMPIDCKVFVLDEEQQQWVPVESLGDRVFLLSPQGSYSISALDFPGCKGNRIF 636
               +     +  KVF L+EE + W+ V++L DRV  L    ++S SA +  GCKGN IF
Sbjct: 279 DLVQYMSERTVRFKVFKLNEEGKSWIEVKNLEDRVLFLGDDSTFSASASELSGCKGNCIF 338

Query: 637 FTD-YEFSLDRGKD--TFSHNIGVFDLKDGTFEEL--VDSSYLLFWPPPTWIST 783
           F D + +S + G D      +IGVF+L+ G    L        +FWPPP WI++
Sbjct: 339 FEDNFFYSREEGDDGSMIGRDIGVFELESGCIGPLRNFPDYSKMFWPPPDWIAS 392


>ref|XP_002278547.2| PREDICTED: F-box protein SKIP23-like [Vitis vinifera]
          Length = 405

 Score = 99.4 bits (246), Expect = 9e-19
 Identities = 67/230 (29%), Positives = 112/230 (48%), Gaps = 8/230 (3%)
 Frame = +1

Query: 127 KFGYFKCGYVTWTDFVIKDHEASFDDLIHYKGQFIVVDSTGQTFVLDPYTLSSTTLANRV 306
           +   ++ G   W+       ++ FDD+I+YKG+F  +D  G+  V+D  +L +T LA+ V
Sbjct: 197 RLALWRLGEEKWSLIDDGAEKSHFDDVIYYKGRFYAIDYKGRIVVIDADSLKATELASPV 256

Query: 307 VKRYEEEQMKQFRETNCVPIIYVDSRRHLIISNKQLFLVDIYVEEHGPNWPCDSHGQCM- 483
                       R T+          +H + S  +LFLVD Y+++    + C+ +   + 
Sbjct: 257 ---------HGSRGTH----------KHFVESFGELFLVDKYLDDELQIF-CNDYSDIVA 296

Query: 484 -----PIDCKVFVLDEEQQQWVPVESLGDRVFLLSPQGSYSISALDFPGCKGNRIFFTDY 648
                P+  +VF   EE+Q+W  V  +GDRV  +    ++S+S+ DFPG KGN ++FT  
Sbjct: 297 DVPDYPVHFEVFKFIEEEQKWDWVSDIGDRVLFVGDDRTFSLSSTDFPGFKGNCVYFTQD 356

Query: 649 EFSLDRGKDTFSHNIGVFDLKDGTFEEL--VDSSYLLFWPPPTWISTPNS 792
            F  +   D    + G+FDL++     L        +FWPPP W+    S
Sbjct: 357 CF-CEEDDDRPGFDAGIFDLEERIAGPLSAFPGYSKIFWPPPAWLRPQRS 405