BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00005445
         (401 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004150218.1| PREDICTED: pentatricopeptide repeat-containi...   213   1e-53
ref|XP_002870024.1| pentatricopeptide repeat-containing protein ...   212   3e-53
dbj|BAD94843.1| putative protein [Arabidopsis thaliana]               208   3e-52
ref|NP_193610.1| pentatricopeptide repeat-containing protein [Ar...   208   3e-52
ref|XP_002305733.1| predicted protein [Populus trichocarpa] gi|2...   208   4e-52

>ref|XP_004150218.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
            chloroplastic-like [Cucumis sativus]
            gi|449500809|ref|XP_004161200.1| PREDICTED:
            pentatricopeptide repeat-containing protein At4g18750,
            chloroplastic-like [Cucumis sativus]
          Length = 926

 Score =  213 bits (542), Expect = 1e-53
 Identities = 96/132 (72%), Positives = 115/132 (87%)
 Frame = +2

Query: 5    DAITIFDQMRSTGLQPDGVSFVAILYACSHSGLLVEGWRFYNIMCNDCKMQPKLEHYACM 184
            +AI  F+QMR TG++PD VSF++ILYACSHSGLL EGW+ +NIM  +C+++P LEHYACM
Sbjct: 638  EAINTFNQMRMTGIEPDEVSFISILYACSHSGLLDEGWKIFNIMKKECQIEPNLEHYACM 697

Query: 185  VDLLARAGRLAKAYKFIEAMPIKPDSTIWGALLCGCRTHRDVNLAEKVAEKVFELELDNT 364
            VDLLAR G L KA+KFI+AMPIKPD+TIWGALLCGCR H DV LAEKVAE++FELE +NT
Sbjct: 698  VDLLARTGNLVKAHKFIKAMPIKPDATIWGALLCGCRIHHDVKLAEKVAERIFELEPENT 757

Query: 365  GYYILLVNIYAE 400
            GYY+LL NIYAE
Sbjct: 758  GYYVLLANIYAE 769


>ref|XP_002870024.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297315860|gb|EFH46283.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 871

 Score =  212 bits (539), Expect = 3e-53
 Identities = 93/133 (69%), Positives = 117/133 (87%)
 Frame = +2

Query: 2   KDAITIFDQMRSTGLQPDGVSFVAILYACSHSGLLVEGWRFYNIMCNDCKMQPKLEHYAC 181
           K+AI +F+QMR  G++PD +SFV++LYACSHSGL+ EGWRF+NIM ++CK++P +EHYAC
Sbjct: 582 KEAIALFNQMRQAGIEPDEISFVSLLYACSHSGLVDEGWRFFNIMRHECKIEPTVEHYAC 641

Query: 182 MVDLLARAGRLAKAYKFIEAMPIKPDSTIWGALLCGCRTHRDVNLAEKVAEKVFELELDN 361
           +VD+LAR G L+KAY+FIE MPI PD+TIWGALLCGCR H DV LAE+VAEKVFELE +N
Sbjct: 642 IVDMLARTGNLSKAYRFIENMPIPPDATIWGALLCGCRIHHDVKLAERVAEKVFELEPEN 701

Query: 362 TGYYILLVNIYAE 400
           TGYY+L+ NIYAE
Sbjct: 702 TGYYVLMANIYAE 714


>dbj|BAD94843.1| putative protein [Arabidopsis thaliana]
          Length = 720

 Score =  208 bits (530), Expect = 3e-52
 Identities = 93/133 (69%), Positives = 115/133 (86%)
 Frame = +2

Query: 2   KDAITIFDQMRSTGLQPDGVSFVAILYACSHSGLLVEGWRFYNIMCNDCKMQPKLEHYAC 181
           K+AI +F+QMR  G++ D +SFV++LYACSHSGL+ EGWRF+NIM ++CK++P +EHYAC
Sbjct: 431 KEAIALFNQMRQAGIEADEISFVSLLYACSHSGLVDEGWRFFNIMRHECKIEPTVEHYAC 490

Query: 182 MVDLLARAGRLAKAYKFIEAMPIKPDSTIWGALLCGCRTHRDVNLAEKVAEKVFELELDN 361
           +VD+LAR G L KAY+FIE MPI PD+TIWGALLCGCR H DV LAEKVAEKVFELE +N
Sbjct: 491 IVDMLARTGDLIKAYRFIENMPIPPDATIWGALLCGCRIHHDVKLAEKVAEKVFELEPEN 550

Query: 362 TGYYILLVNIYAE 400
           TGYY+L+ NIYAE
Sbjct: 551 TGYYVLMANIYAE 563


>ref|NP_193610.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75206861|sp|Q9SN39.1|PP320_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At4g18750, chloroplastic; Flags: Precursor
           gi|4539394|emb|CAB37460.1| putative protein [Arabidopsis
           thaliana] gi|7268669|emb|CAB78877.1| putative protein
           [Arabidopsis thaliana] gi|332658686|gb|AEE84086.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           thaliana]
          Length = 871

 Score =  208 bits (530), Expect = 3e-52
 Identities = 93/133 (69%), Positives = 115/133 (86%)
 Frame = +2

Query: 2   KDAITIFDQMRSTGLQPDGVSFVAILYACSHSGLLVEGWRFYNIMCNDCKMQPKLEHYAC 181
           K+AI +F+QMR  G++ D +SFV++LYACSHSGL+ EGWRF+NIM ++CK++P +EHYAC
Sbjct: 582 KEAIALFNQMRQAGIEADEISFVSLLYACSHSGLVDEGWRFFNIMRHECKIEPTVEHYAC 641

Query: 182 MVDLLARAGRLAKAYKFIEAMPIKPDSTIWGALLCGCRTHRDVNLAEKVAEKVFELELDN 361
           +VD+LAR G L KAY+FIE MPI PD+TIWGALLCGCR H DV LAEKVAEKVFELE +N
Sbjct: 642 IVDMLARTGDLIKAYRFIENMPIPPDATIWGALLCGCRIHHDVKLAEKVAEKVFELEPEN 701

Query: 362 TGYYILLVNIYAE 400
           TGYY+L+ NIYAE
Sbjct: 702 TGYYVLMANIYAE 714


>ref|XP_002305733.1| predicted protein [Populus trichocarpa] gi|222848697|gb|EEE86244.1|
           predicted protein [Populus trichocarpa]
          Length = 571

 Score =  208 bits (529), Expect = 4e-52
 Identities = 94/132 (71%), Positives = 116/132 (87%)
 Frame = +2

Query: 5   DAITIFDQMRSTGLQPDGVSFVAILYACSHSGLLVEGWRFYNIMCNDCKMQPKLEHYACM 184
           +AIT F++MR  G++PD VSF++ILYACSHSGLL EGWRF+N+M ++C ++PKLEHYAC+
Sbjct: 283 NAITTFNEMRQAGIEPDEVSFISILYACSHSGLLDEGWRFFNVMQDECNVKPKLEHYACI 342

Query: 185 VDLLARAGRLAKAYKFIEAMPIKPDSTIWGALLCGCRTHRDVNLAEKVAEKVFELELDNT 364
           VDLLAR+G+LA AYKFI++MPI+PD+TIWGALL GCR H DV LAEKVAE VFELE +NT
Sbjct: 343 VDLLARSGKLAMAYKFIKSMPIEPDATIWGALLSGCRIHHDVKLAEKVAEHVFELEPENT 402

Query: 365 GYYILLVNIYAE 400
           GYY+LL N YAE
Sbjct: 403 GYYVLLANTYAE 414