BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00005410
         (892 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ACM47218.1| plastid carbamoylphosphate synthetase small subun...   146   7e-33
gb|ACM47217.1| plastid carbamoylphosphate synthetase small subun...   144   3e-32
gb|AFK43577.1| unknown [Medicago truncatula]                          144   4e-32
ref|XP_003570230.1| PREDICTED: carbamoyl-phosphate synthase smal...   144   4e-32
ref|XP_003608866.1| Carbamoyl-phosphate synthase small chain [Me...   144   4e-32

>gb|ACM47218.1| plastid carbamoylphosphate synthetase small subunit 1 [Medicago
           truncatula]
          Length = 432

 Score =  146 bits (368), Expect = 7e-33
 Identities = 90/204 (44%), Positives = 110/204 (53%), Gaps = 10/204 (4%)
 Frame = -1

Query: 892 GVLSTKKSKTDEELLEMSRTWNIVGVDLISGVSCTAPYERVDRTGSDWEFLNKGSEDGNF 713
           GVLST  SKTDEELL+MS++W+IVG+DLISGVSC +PYE VDRT  +WEF +       F
Sbjct: 174 GVLSTDNSKTDEELLQMSKSWDIVGIDLISGVSCKSPYEWVDRTKEEWEFSSSEGPRDTF 233

Query: 712 HISGLLLVQ*ICFDVDSSHCFSFCVMKVVAYDFGIKHNILQRLASCG---------YLVH 560
           H                          VVAYDFGIKHNIL+RLAS G         +   
Sbjct: 234 H--------------------------VVAYDFGIKHNILRRLASYGCKITVVPSTWPAS 267

Query: 559 GQSK*NLMELFLAMDLGILQQCLMLLKY*RKCLERFLFLAFAWDIN-CGQALGGKTFKMK 383
              K N   +  +   G        ++  +  + +             GQALGG T+KMK
Sbjct: 268 ETLKLNPDGVLFSNGPGDPSAVPYAVETVKNIIGKVPVFGICMGHQLLGQALGGTTYKMK 327

Query: 382 FGHHGGNHPVRNVRNSRVEISAQN 311
           FGHHGGNHPVRN+R  RVEIS+QN
Sbjct: 328 FGHHGGNHPVRNLRTGRVEISSQN 351



 Score =  125 bits (313), Expect = 2e-26
 Identities = 67/128 (52%), Positives = 78/128 (60%), Gaps = 5/128 (3%)
 Frame = -3

Query: 572 LPCTWP----VKMKPDGVVFSNGPGDPSAVSYAVEILKEMLGKVPVFGICMGHQLR-PGI 408
           +P TWP    +K+ PDGV+FSNGPGDPSAV YAVE +K ++GKVPVFGICMGHQL    +
Sbjct: 260 VPSTWPASETLKLNPDGVLFSNGPGDPSAVPYAVETVKNIIGKVPVFGICMGHQLLGQAL 319

Query: 407 GW*NL*NEVWXXXXXXXXXXXXXXXXRDQCSEFNYAVDPASLPEGVEVTRVNLNDGSCAN 228
           G      +                         NYAVDPA+LPEGVEVT +NLND SCA 
Sbjct: 320 GGTTYKMKFGHHGGNHPVRNLRTGRVEISSQNHNYAVDPATLPEGVEVTHINLNDSSCAG 379

Query: 227 LAFPVLNI 204
           LAFP   I
Sbjct: 380 LAFPAQKI 387


>gb|ACM47217.1| plastid carbamoylphosphate synthetase small subunit 2 [Medicago
           truncatula]
          Length = 431

 Score =  144 bits (363), Expect = 3e-32
 Identities = 93/204 (45%), Positives = 114/204 (55%), Gaps = 10/204 (4%)
 Frame = -1

Query: 892 GVLSTKKSKTDEELLEMSRTWNIVGVDLISGVSCTAPYERVDRTGSDWEFLNKGSEDGNF 713
           GVLST  SKTDEELL+MS++W+IVG+DLISGVSC +P+E +DRT  +WEF +       F
Sbjct: 173 GVLSTDNSKTDEELLQMSKSWDIVGIDLISGVSCKSPHEWIDRTREEWEFSSSEGPRDTF 232

Query: 712 HISGLLLVQ*ICFDVDSSHCFSFCVMKVVAYDFGIKHNILQRLAS--CGYLVHGQSK*NL 539
           H                          VVAYDFGIKHNIL+RLAS  C   V   +    
Sbjct: 233 H--------------------------VVAYDFGIKHNILRRLASYGCKITVVPSTWPAS 266

Query: 538 MELFLAMDLGILQQ---CLMLLKY*RKCLERFLFLAFAWDI-----NCGQALGGKTFKMK 383
             L L  D    QQ       + Y  + ++  +     + I       GQALGG T+KMK
Sbjct: 267 ETLKLNPDGVPFQQRPGDPSAVPYAVETVKNIIGKVPVFGICMGHQLLGQALGGTTYKMK 326

Query: 382 FGHHGGNHPVRNVRNSRVEISAQN 311
           FGHHGGNHPVRN+R  RVEIS+QN
Sbjct: 327 FGHHGGNHPVRNLRTGRVEISSQN 350



 Score =  117 bits (294), Expect = 3e-24
 Identities = 73/170 (42%), Positives = 89/170 (52%), Gaps = 14/170 (8%)
 Frame = -3

Query: 572 LPCTWP----VKMKPDGVVFSNGPGDPSAVSYAVEILKEMLGKVPVFGICMGHQLR-PGI 408
           +P TWP    +K+ PDGV F   PGDPSAV YAVE +K ++GKVPVFGICMGHQL    +
Sbjct: 259 VPSTWPASETLKLNPDGVPFQQRPGDPSAVPYAVETVKNIIGKVPVFGICMGHQLLGQAL 318

Query: 407 GW*NL*NEVWXXXXXXXXXXXXXXXXRDQCSEFNYAVDPASLPEGVEVTRVNLNDGSCAN 228
           G      +                         NYAVDPA+LP+GVEVT +NLND SCA 
Sbjct: 319 GGTTYKMKFGHHGGNHPVRNLRTGRVEISSQNHNYAVDPATLPKGVEVTHINLNDSSCAG 378

Query: 227 LAFPVLNICTF--------GP-DLLNDS*PFNRIQNIGKSSNNGEFLSKL 105
           LAFP   + +         GP D  N    F  +   GKS  + E L +L
Sbjct: 379 LAFPARKVVSLQYHPEASPGPHDSDNAFKEFVELMKQGKSKTSNENLHQL 428


>gb|AFK43577.1| unknown [Medicago truncatula]
          Length = 431

 Score =  144 bits (362), Expect = 4e-32
 Identities = 88/204 (43%), Positives = 110/204 (53%), Gaps = 10/204 (4%)
 Frame = -1

Query: 892 GVLSTKKSKTDEELLEMSRTWNIVGVDLISGVSCTAPYERVDRTGSDWEFLNKGSEDGNF 713
           GVLST  SKTDEELL+MS++W+IVG+DLISGVSC +P+E +DRT  +WEF +       F
Sbjct: 173 GVLSTDNSKTDEELLQMSKSWDIVGIDLISGVSCKSPHEWIDRTREEWEFSSSEGPRDTF 232

Query: 712 HISGLLLVQ*ICFDVDSSHCFSFCVMKVVAYDFGIKHNILQRLASCG---------YLVH 560
           H                          VVAYDFGIKHNIL+RLAS G         +   
Sbjct: 233 H--------------------------VVAYDFGIKHNILRRLASYGCKITVVPSTWPAS 266

Query: 559 GQSK*NLMELFLAMDLGILQQCLMLLKY*RKCLERFLFLAFAWDIN-CGQALGGKTFKMK 383
              K N   +  +   G        ++  +  + +             GQALGG T+KMK
Sbjct: 267 ETLKLNPDGVLFSNGPGDPSAVPYAVETVKNIIGKVPVFGICMGHQLLGQALGGTTYKMK 326

Query: 382 FGHHGGNHPVRNVRNSRVEISAQN 311
           FGHHGGNHPVRN+R  RVEIS+QN
Sbjct: 327 FGHHGGNHPVRNLRTGRVEISSQN 350



 Score =  127 bits (318), Expect = 5e-27
 Identities = 77/170 (45%), Positives = 93/170 (54%), Gaps = 14/170 (8%)
 Frame = -3

Query: 572 LPCTWP----VKMKPDGVVFSNGPGDPSAVSYAVEILKEMLGKVPVFGICMGHQLR-PGI 408
           +P TWP    +K+ PDGV+FSNGPGDPSAV YAVE +K ++GKVPVFGICMGHQL    +
Sbjct: 259 VPSTWPASETLKLNPDGVLFSNGPGDPSAVPYAVETVKNIIGKVPVFGICMGHQLLGQAL 318

Query: 407 GW*NL*NEVWXXXXXXXXXXXXXXXXRDQCSEFNYAVDPASLPEGVEVTRVNLNDGSCAN 228
           G      +                         NYAVDPA+LP+GVEVT +NLND SCA 
Sbjct: 319 GGTTYKMKFGHHGGNHPVRNLRTGRVEISSQNHNYAVDPATLPKGVEVTHINLNDSSCAG 378

Query: 227 LAFPVLNICTF--------GP-DLLNDS*PFNRIQNIGKSSNNGEFLSKL 105
           LAFP   +  F        GP D  N    F  +   GKS  + E L +L
Sbjct: 379 LAFPARKVVFFQYHPEASPGPHDSDNAFKEFVELMKQGKSKTSNENLHQL 428


>ref|XP_003570230.1| PREDICTED: carbamoyl-phosphate synthase small chain-like
           [Brachypodium distachyon]
          Length = 438

 Score =  144 bits (362), Expect = 4e-32
 Identities = 98/205 (47%), Positives = 116/205 (56%), Gaps = 11/205 (5%)
 Frame = -1

Query: 892 GVLSTKKSKTDEELLEMSRTWNIVGVDLISGVSCTAPYERVDRTGSDWEFLNKGSEDGNF 713
           GVLST +S+ DEELLEM++ W IVGVDLISGVSC APYE +D+T S+WEF NK S +  F
Sbjct: 194 GVLSTDQSRKDEELLEMAQKWKIVGVDLISGVSCDAPYEWLDKTDSEWEFKNKKSTE-TF 252

Query: 712 HISGLLLVQ*ICFDVDSSHCFSFCVMKVVAYDFGIKHNILQRLAS--CGYLVHGQSK*NL 539
           HI                          VAYDFG+K NIL+RLAS  C   V   S    
Sbjct: 253 HI--------------------------VAYDFGVKQNILRRLASYGCKITVVPASWPAS 286

Query: 538 MELFLAMDLGIL----QQCLMLLKY*RKCLERFLFLAFAWDI-----NCGQALGGKTFKM 386
             L L  D G+L          + Y  K ++  +     + I       GQALGGKTFKM
Sbjct: 287 ETLKLKPD-GVLFSNGPGDPAAVPYAVKTVQEIVGKVPVFGICMGHQLIGQALGGKTFKM 345

Query: 385 KFGHHGGNHPVRNVRNSRVEISAQN 311
           KFGHHGGNHPVR+ R  RV+ISAQN
Sbjct: 346 KFGHHGGNHPVRDNRTGRVDISAQN 370



 Score =  121 bits (303), Expect = 2e-25
 Identities = 63/128 (49%), Positives = 80/128 (62%), Gaps = 5/128 (3%)
 Frame = -3

Query: 572 LPCTWP----VKMKPDGVVFSNGPGDPSAVSYAVEILKEMLGKVPVFGICMGHQL-RPGI 408
           +P +WP    +K+KPDGV+FSNGPGDP+AV YAV+ ++E++GKVPVFGICMGHQL    +
Sbjct: 279 VPASWPASETLKLKPDGVLFSNGPGDPAAVPYAVKTVQEIVGKVPVFGICMGHQLIGQAL 338

Query: 407 GW*NL*NEVWXXXXXXXXXXXXXXXXRDQCSEFNYAVDPASLPEGVEVTRVNLNDGSCAN 228
           G      +                         NYAVDP SLPEGV+VT +NLND SCA 
Sbjct: 339 GGKTFKMKFGHHGGNHPVRDNRTGRVDISAQNHNYAVDPESLPEGVQVTHINLNDQSCAG 398

Query: 227 LAFPVLNI 204
           LAFP + +
Sbjct: 399 LAFPKMKL 406


>ref|XP_003608866.1| Carbamoyl-phosphate synthase small chain [Medicago truncatula]
           gi|355509921|gb|AES91063.1| Carbamoyl-phosphate synthase
           small chain [Medicago truncatula]
          Length = 281

 Score =  144 bits (362), Expect = 4e-32
 Identities = 88/204 (43%), Positives = 110/204 (53%), Gaps = 10/204 (4%)
 Frame = -1

Query: 892 GVLSTKKSKTDEELLEMSRTWNIVGVDLISGVSCTAPYERVDRTGSDWEFLNKGSEDGNF 713
           GVLST  SKTDEELL+MS++W+IVG+DLISGVSC +P+E +DRT  +WEF +       F
Sbjct: 23  GVLSTDNSKTDEELLQMSKSWDIVGIDLISGVSCKSPHEWIDRTREEWEFSSSEGPRDTF 82

Query: 712 HISGLLLVQ*ICFDVDSSHCFSFCVMKVVAYDFGIKHNILQRLASCG---------YLVH 560
           H                          VVAYDFGIKHNIL+RLAS G         +   
Sbjct: 83  H--------------------------VVAYDFGIKHNILRRLASYGCKITVVPSTWPAS 116

Query: 559 GQSK*NLMELFLAMDLGILQQCLMLLKY*RKCLERFLFLAFAWDIN-CGQALGGKTFKMK 383
              K N   +  +   G        ++  +  + +             GQALGG T+KMK
Sbjct: 117 ETLKLNPDGVLFSNGPGDPSAVPYAVETVKNIIGKVPVFGICMGHQLLGQALGGTTYKMK 176

Query: 382 FGHHGGNHPVRNVRNSRVEISAQN 311
           FGHHGGNHPVRN+R  RVEIS+QN
Sbjct: 177 FGHHGGNHPVRNLRTGRVEISSQN 200



 Score =  125 bits (315), Expect = 1e-26
 Identities = 76/170 (44%), Positives = 93/170 (54%), Gaps = 14/170 (8%)
 Frame = -3

Query: 572 LPCTWP----VKMKPDGVVFSNGPGDPSAVSYAVEILKEMLGKVPVFGICMGHQLR-PGI 408
           +P TWP    +K+ PDGV+FSNGPGDPSAV YAVE +K ++GKVPVFGICMGHQL    +
Sbjct: 109 VPSTWPASETLKLNPDGVLFSNGPGDPSAVPYAVETVKNIIGKVPVFGICMGHQLLGQAL 168

Query: 407 GW*NL*NEVWXXXXXXXXXXXXXXXXRDQCSEFNYAVDPASLPEGVEVTRVNLNDGSCAN 228
           G      +                         NYAVDPA+LP+GVEVT +NLND SCA 
Sbjct: 169 GGTTYKMKFGHHGGNHPVRNLRTGRVEISSQNHNYAVDPATLPKGVEVTHINLNDSSCAG 228

Query: 227 LAFPVLNICTF--------GP-DLLNDS*PFNRIQNIGKSSNNGEFLSKL 105
           LAFP   + +         GP D  N    F  +   GKS  + E L +L
Sbjct: 229 LAFPARKVVSLQYHPEASPGPHDSDNAFKEFVELMKQGKSKTSNENLHQL 278