BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00005379
         (1595 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003634223.1| PREDICTED: RNA pseudourine synthase 7-like i...   603   e-170
ref|XP_002511129.1| ribosomal pseudouridine synthase, putative [...   602   e-170
emb|CBI15710.3| unnamed protein product [Vitis vinifera]              592   e-167
ref|XP_002321729.1| predicted protein [Populus trichocarpa] gi|2...   589   e-166
ref|XP_003526941.1| PREDICTED: RNA pseudourine synthase 7-like [...   579   e-163

>ref|XP_003634223.1| PREDICTED: RNA pseudourine synthase 7-like isoform 2 [Vitis vinifera]
            gi|359491114|ref|XP_002280549.2| PREDICTED: RNA
            pseudourine synthase 7-like isoform 1 [Vitis vinifera]
          Length = 386

 Score =  603 bits (1554), Expect = e-170
 Identities = 288/383 (75%), Positives = 327/383 (85%), Gaps = 2/383 (0%)
 Frame = +1

Query: 1    MKRKRGKG-DMEIVWQTPANPPERHDYIFRNGKRHVRPYYFEFISHVKNRWAGKTIVDLF 177
            MKR+R +  +MEIVWQTPANPPERHDYIFRNGKRHVRPYYFEFISHVKNRWAGKTIVDLF
Sbjct: 1    MKRRRDEAAEMEIVWQTPANPPERHDYIFRNGKRHVRPYYFEFISHVKNRWAGKTIVDLF 60

Query: 178  AQEFKGRPYDYYVSAVECGRIQVDGEMVPVSYIVKSSQKISHFLHRHEPPVMALDLSILH 357
             +EFKGRPYDYYV+AV+ GRIQVDGEMVPVSYIV+SSQKISHF+HRHEPPV+ALD+S+L 
Sbjct: 61   TEEFKGRPYDYYVNAVQSGRIQVDGEMVPVSYIVRSSQKISHFVHRHEPPVLALDVSVLQ 120

Query: 358  KESEVVTVCKPASVPVHPCGQYRKNTVVGILQAEHDLAPLFPVHRLDRLVSGLLIFARSA 537
            KE +V+T+CKPASVPVHPCGQYRKNTVVGILQAEH LAPLFP+HRLDRLVSGLLI ARSA
Sbjct: 121  KEPDVLTICKPASVPVHPCGQYRKNTVVGILQAEHGLAPLFPIHRLDRLVSGLLILARSA 180

Query: 538  AKADLFRQQIEAGMVQKQYIAKVIGVFPKAE-VVNANVDYNAREGRSSAEEEKCPGDIHP 714
            +KAD FRQQIEAGMVQKQYIAKV GVFP  E VVN NV+YNAREGRS+ E   C G+   
Sbjct: 181  SKADSFRQQIEAGMVQKQYIAKVTGVFPDDEQVVNVNVNYNAREGRSTVEVGNCCGNTPL 240

Query: 715  KGKSACTKFTRISTNGTYSIVLCEPVTGRTHQIRVHLKYAGHPIANDALYLHDVVATRST 894
            KGKSACTKFTRISTNGT+SIVLCEP+TGRTHQIRVHL+Y GHPIAND LYL +    RST
Sbjct: 241  KGKSACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGHPIANDMLYLSEFSVDRST 300

Query: 895  VEVTAEKEAMLNSDHSTFQFPNNGQSDESEESSSKNFSTDPMCTNCPDLVPKGYGKDEEG 1074
              ++A++ A  +        P +   +  +++S+ +FS DPMCTNCP+L PKGY +DEEG
Sbjct: 301  KGLSADRAAANSGCSLPSSSPKSCVDEYCDDNSTVDFSIDPMCTNCPNLTPKGYDEDEEG 360

Query: 1075 LWLHCARYSGPGWVYECPYPDWA 1143
            LWLHC RY GP WVYECP+P+WA
Sbjct: 361  LWLHCIRYCGPDWVYECPHPEWA 383


>ref|XP_002511129.1| ribosomal pseudouridine synthase, putative [Ricinus communis]
            gi|223550244|gb|EEF51731.1| ribosomal pseudouridine
            synthase, putative [Ricinus communis]
          Length = 385

 Score =  602 bits (1553), Expect = e-170
 Identities = 293/388 (75%), Positives = 332/388 (85%), Gaps = 4/388 (1%)
 Frame = +1

Query: 1    MKRKR---GKGDMEIVWQTPANPPERHDYIFRNGKRHVRPYYFEFISHVKNRWAGKTIVD 171
            MKRKR    K DMEIVWQTPANPPE+HDYIFR+G+RHVRPYYFEFISH KNRWAGKTIVD
Sbjct: 1    MKRKREEENKNDMEIVWQTPANPPEKHDYIFRDGRRHVRPYYFEFISHAKNRWAGKTIVD 60

Query: 172  LFAQEFKGRPYDYYVSAVECGRIQVDGEMVPVSYIVKSSQKISHFLHRHEPPVMALDLSI 351
            LFA+EFKGRPYDYYVSAV+CGRIQVDGE VPVSYIVKSSQKISHFLHRHEPPV A D+ +
Sbjct: 61   LFAEEFKGRPYDYYVSAVKCGRIQVDGETVPVSYIVKSSQKISHFLHRHEPPVTAWDIPV 120

Query: 352  LHKESEVVTVCKPASVPVHPCGQYRKNTVVGILQAEHDLAPLFPVHRLDRLVSGLLIFAR 531
            L+K+ +VVTV KPA+VPVHPCGQYRKNTVVGILQAEH+LAPLFPVHRLDRLVSGLLI AR
Sbjct: 121  LYKDPDVVTVYKPATVPVHPCGQYRKNTVVGILQAEHNLAPLFPVHRLDRLVSGLLILAR 180

Query: 532  SAAKADLFRQQIEAGMVQKQYIAKVIGVFPKAE-VVNANVDYNAREGRSSAEEEKCPGDI 708
            +A KADLFRQ+IEAGMVQKQY+AKV+GVFP+ E VV  N++YNAREGRS+AE      D 
Sbjct: 181  NALKADLFRQEIEAGMVQKQYVAKVVGVFPEDEQVVGVNINYNAREGRSTAEVGNSCVDS 240

Query: 709  HPKGKSACTKFTRISTNGTYSIVLCEPVTGRTHQIRVHLKYAGHPIANDALYLHDVVATR 888
             PKGK+ACTKFTRISTNGT+SIVLC+P+TGRTHQIRVHL+Y GHPIAND LYL +  A+R
Sbjct: 241  PPKGKTACTKFTRISTNGTHSIVLCKPITGRTHQIRVHLQYTGHPIANDFLYLSEHAASR 300

Query: 889  STVEVTAEKEAMLNSDHSTFQFPNNGQSDESEESSSKNFSTDPMCTNCPDLVPKGYGKDE 1068
            S   ++A++ A  +S   T   P +  SD  EE+S ++FS DPMCTNCP+L PKGY   E
Sbjct: 301  SAEGMSADRAACSSSYCVT---PQDFCSDTHEENSVQDFSIDPMCTNCPNLAPKGYDVYE 357

Query: 1069 EGLWLHCARYSGPGWVYECPYPDWAVLS 1152
            E LWLHC +YSGPGWVYECPYPDWA+LS
Sbjct: 358  ECLWLHCVQYSGPGWVYECPYPDWAILS 385


>emb|CBI15710.3| unnamed protein product [Vitis vinifera]
          Length = 374

 Score =  592 bits (1526), Expect = e-167
 Identities = 283/373 (75%), Positives = 319/373 (85%), Gaps = 1/373 (0%)
 Frame = +1

Query: 28   MEIVWQTPANPPERHDYIFRNGKRHVRPYYFEFISHVKNRWAGKTIVDLFAQEFKGRPYD 207
            MEIVWQTPANPPERHDYIFRNGKRHVRPYYFEFISHVKNRWAGKTIVDLF +EFKGRPYD
Sbjct: 1    MEIVWQTPANPPERHDYIFRNGKRHVRPYYFEFISHVKNRWAGKTIVDLFTEEFKGRPYD 60

Query: 208  YYVSAVECGRIQVDGEMVPVSYIVKSSQKISHFLHRHEPPVMALDLSILHKESEVVTVCK 387
            YYV+AV+ GRIQVDGEMVPVSYIV+SSQKISHF+HRHEPPV+ALD+S+L KE +V+T+CK
Sbjct: 61   YYVNAVQSGRIQVDGEMVPVSYIVRSSQKISHFVHRHEPPVLALDVSVLQKEPDVLTICK 120

Query: 388  PASVPVHPCGQYRKNTVVGILQAEHDLAPLFPVHRLDRLVSGLLIFARSAAKADLFRQQI 567
            PASVPVHPCGQYRKNTVVGILQAEH LAPLFP+HRLDRLVSGLLI ARSA+KAD FRQQI
Sbjct: 121  PASVPVHPCGQYRKNTVVGILQAEHGLAPLFPIHRLDRLVSGLLILARSASKADSFRQQI 180

Query: 568  EAGMVQKQYIAKVIGVFPKAE-VVNANVDYNAREGRSSAEEEKCPGDIHPKGKSACTKFT 744
            EAGMVQKQYIAKV GVFP  E VVN NV+YNAREGRS+     C G+   KGKSACTKFT
Sbjct: 181  EAGMVQKQYIAKVTGVFPDDEQVVNVNVNYNAREGRSTV--GNCCGNTPLKGKSACTKFT 238

Query: 745  RISTNGTYSIVLCEPVTGRTHQIRVHLKYAGHPIANDALYLHDVVATRSTVEVTAEKEAM 924
            RISTNGT+SIVLCEP+TGRTHQIRVHL+Y GHPIAND LYL +    RST  ++A++ A 
Sbjct: 239  RISTNGTHSIVLCEPITGRTHQIRVHLQYTGHPIANDMLYLSEFSVDRSTKGLSADRAAA 298

Query: 925  LNSDHSTFQFPNNGQSDESEESSSKNFSTDPMCTNCPDLVPKGYGKDEEGLWLHCARYSG 1104
             +        P +   +  +++S+ +FS DPMCTNCP+L PKGY +DEEGLWLHC RY G
Sbjct: 299  NSGCSLPSSSPKSCVDEYCDDNSTVDFSIDPMCTNCPNLTPKGYDEDEEGLWLHCIRYCG 358

Query: 1105 PGWVYECPYPDWA 1143
            P WVYECP+P+WA
Sbjct: 359  PDWVYECPHPEWA 371


>ref|XP_002321729.1| predicted protein [Populus trichocarpa] gi|222868725|gb|EEF05856.1|
            predicted protein [Populus trichocarpa]
          Length = 388

 Score =  589 bits (1518), Expect = e-166
 Identities = 285/389 (73%), Positives = 325/389 (83%), Gaps = 7/389 (1%)
 Frame = +1

Query: 1    MKRKRGKGD------MEIVWQTPANPPERHDYIFRNGKRHVRPYYFEFISHVKNRWAGKT 162
            MKRKRG+ +      MEIVWQTPANPPE+HDYIFR+G+RHVRPY+FEFISHVKNRWAGKT
Sbjct: 1    MKRKRGEKEEAAEKKMEIVWQTPANPPEKHDYIFRDGRRHVRPYHFEFISHVKNRWAGKT 60

Query: 163  IVDLFAQEFKGRPYDYYVSAVECGRIQVDGEMVPVSYIVKSSQKISHFLHRHEPPVMALD 342
            IVDLFA+EFKGRPYDYYVSAV+CGRIQVDGEMVPVSYIVKSSQKISHF+HRHEPPVMA D
Sbjct: 61   IVDLFAEEFKGRPYDYYVSAVKCGRIQVDGEMVPVSYIVKSSQKISHFVHRHEPPVMAWD 120

Query: 343  LSILHKESEVVTVCKPASVPVHPCGQYRKNTVVGILQAEHDLAPLFPVHRLDRLVSGLLI 522
            + IL KE +VVTV KPA+VPVHPCGQYRKNTVVG+LQAEH LAPLFPVHRLDRLVSGLLI
Sbjct: 121  VPILDKEDDVVTVWKPATVPVHPCGQYRKNTVVGVLQAEHGLAPLFPVHRLDRLVSGLLI 180

Query: 523  FARSAAKADLFRQQIEAGMVQKQYIAKVIGVFPKAE-VVNANVDYNAREGRSSAEEEKCP 699
             AR+A +ADLFRQ+IEAG VQKQY+AKVIGVFP+ E +V+ NV+YNAREGRS+ E     
Sbjct: 181  LARNATRADLFRQEIEAGKVQKQYVAKVIGVFPEDEQIVDVNVNYNAREGRSTVEVGNSC 240

Query: 700  GDIHPKGKSACTKFTRISTNGTYSIVLCEPVTGRTHQIRVHLKYAGHPIANDALYLHDVV 879
                 KGK+ACTKFTRI TNG +SIVLC+P+TGRTHQIRVHL+Y GHPIAND LYL + V
Sbjct: 241  DGSPIKGKTACTKFTRIGTNGIHSIVLCKPITGRTHQIRVHLQYTGHPIANDILYLSENV 300

Query: 880  ATRSTVEVTAEKEAMLNSDHSTFQFPNNGQSDESEESSSKNFSTDPMCTNCPDLVPKGYG 1059
              RS+  V A++ A      +    P N  SD+ E+S+ ++F  DPMCTNCP+LVPKGY 
Sbjct: 301  TNRSSEGVNADRAA---HSPNNCLVPENNSSDKYEDSTEEDFDIDPMCTNCPNLVPKGYD 357

Query: 1060 KDEEGLWLHCARYSGPGWVYECPYPDWAV 1146
              EEGLWLHC +YSG GWVY+CPYPDWAV
Sbjct: 358  GHEEGLWLHCVQYSGSGWVYQCPYPDWAV 386


>ref|XP_003526941.1| PREDICTED: RNA pseudourine synthase 7-like [Glycine max]
          Length = 381

 Score =  579 bits (1493), Expect = e-163
 Identities = 285/386 (73%), Positives = 323/386 (83%), Gaps = 3/386 (0%)
 Frame = +1

Query: 1    MKRKR-GKGDME-IVWQTPANPPERHDYIFRNGKRHVRPYYFEFISHVKNRWAGKTIVDL 174
            MKRKR GK  M+ IVWQTPANPP  +DY+FRNG R+VRPYYFEFI+HVKNRWAGKTIVDL
Sbjct: 1    MKRKREGKEGMDNIVWQTPANPPHPNDYVFRNGIRYVRPYYFEFIAHVKNRWAGKTIVDL 60

Query: 175  FAQEFKGRPYDYYVSAVECGRIQVDGEMVPVSYIVKSSQKISHFLHRHEPPVMALDLSIL 354
            FA+EFKGRPY+YYVSAV+CGRIQVDGEMVPVSYIVKSSQKISHFLHRHEPPVMA ++ +L
Sbjct: 61   FAEEFKGRPYEYYVSAVKCGRIQVDGEMVPVSYIVKSSQKISHFLHRHEPPVMACEVPVL 120

Query: 355  HKESEVVTVCKPASVPVHPCGQYRKNTVVGILQAEHDLAPLFPVHRLDRLVSGLLIFARS 534
             K+ +V+TVCKPASVPVHPCGQYRKNTVVGILQAEH L PLFPVHRLDRLVSGLLI AR+
Sbjct: 121  QKDIDVLTVCKPASVPVHPCGQYRKNTVVGILQAEHGLTPLFPVHRLDRLVSGLLILARN 180

Query: 535  AAKADLFRQQIEAGMVQKQYIAKVIGVFPKAEV-VNANVDYNAREGRSSAEEEKCPGDIH 711
            AAKAD+FRQQIEAG+V KQYIAKV G FP+ EV V+AN+DYNAREGRS+AE         
Sbjct: 181  AAKADIFRQQIEAGLVHKQYIAKVGGEFPEDEVIVDANIDYNAREGRSTAEVRG-----S 235

Query: 712  PKGKSACTKFTRISTNGTYSIVLCEPVTGRTHQIRVHLKYAGHPIANDALYLHDVVATRS 891
             KGK+A TKFTRISTNGT SIVLCEP+TGRTHQIRVHL+Y+GHPIAND LY+ +    RS
Sbjct: 236  AKGKAASTKFTRISTNGTQSIVLCEPITGRTHQIRVHLQYSGHPIANDMLYISEQTVDRS 295

Query: 892  TVEVTAEKEAMLNSDHSTFQFPNNGQSDESEESSSKNFSTDPMCTNCPDLVPKGYGKDEE 1071
               ++A++ A ++    T  F N    +E EE+S+ +F  DPMCTNCP+L PKGY  DEE
Sbjct: 296  VKGLSADRSARISGVSLTSNF-NEKVLNECEENSNGDFGIDPMCTNCPNLAPKGYDSDEE 354

Query: 1072 GLWLHCARYSGPGWVYECPYPDWAVL 1149
            GLWLHC RYSGPGW YECPYPDWA L
Sbjct: 355  GLWLHCIRYSGPGWTYECPYPDWAKL 380