BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00005351
         (530 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_001233889.1| DNA-directed RNA polymerase II subunit RPB2 ...   101   6e-20
ref|XP_003547482.1| PREDICTED: DNA-directed RNA polymerase II su...   101   6e-20
ref|XP_003533774.1| PREDICTED: DNA-directed RNA polymerase II su...   101   6e-20
ref|XP_002519060.1| DNA-directed RNA polymerase II subunit, puta...   101   6e-20
dbj|BAJ88548.1| predicted protein [Hordeum vulgare subsp. vulgare]    101   8e-20

>ref|NP_001233889.1| DNA-directed RNA polymerase II subunit RPB2 [Solanum lycopersicum]
            gi|11134656|sp|Q42877.1|RPB2_SOLLC RecName:
            Full=DNA-directed RNA polymerase II subunit RPB2;
            Short=RNA polymerase II subunit 2; Short=RNA polymerase
            II subunit B2; AltName: Full=DNA-directed RNA polymerase
            II 135 kDa polypeptide gi|1049068|gb|AAC49273.1| RNA
            polymerase II subunit 2 [Solanum lycopersicum]
          Length = 1191

 Score =  101 bits (252), Expect = 6e-20
 Identities = 47/52 (90%), Positives = 50/52 (96%)
 Frame = -3

Query: 528  NLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLTKEKRITK 373
            NLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLTK+ ++ K
Sbjct: 1133 NLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLTKDVKLAK 1184


>ref|XP_003547482.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like [Glycine
            max]
          Length = 1193

 Score =  101 bits (252), Expect = 6e-20
 Identities = 48/54 (88%), Positives = 51/54 (94%)
 Frame = -3

Query: 528  NLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLTKEKRITKRK 367
            NLKKNSFECRGCKNKTDIVQV+IPYACKLLFQELMAMAIAPRMLTKE + T +K
Sbjct: 1136 NLKKNSFECRGCKNKTDIVQVYIPYACKLLFQELMAMAIAPRMLTKEVKTTNQK 1189


>ref|XP_003533774.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like [Glycine
            max]
          Length = 1192

 Score =  101 bits (252), Expect = 6e-20
 Identities = 48/54 (88%), Positives = 51/54 (94%)
 Frame = -3

Query: 528  NLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLTKEKRITKRK 367
            NLKKNSFECRGCKNKTDIVQV+IPYACKLLFQELMAMAIAPRMLTKE + T +K
Sbjct: 1136 NLKKNSFECRGCKNKTDIVQVYIPYACKLLFQELMAMAIAPRMLTKEVKTTNQK 1189


>ref|XP_002519060.1| DNA-directed RNA polymerase II subunit, putative [Ricinus communis]
            gi|223541723|gb|EEF43271.1| DNA-directed RNA polymerase
            II subunit, putative [Ricinus communis]
          Length = 1194

 Score =  101 bits (252), Expect = 6e-20
 Identities = 48/52 (92%), Positives = 50/52 (96%)
 Frame = -3

Query: 528  NLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLTKEKRITK 373
            NLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLTK+ + TK
Sbjct: 1136 NLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLTKDVKPTK 1187


>dbj|BAJ88548.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 263

 Score =  101 bits (251), Expect = 8e-20
 Identities = 48/55 (87%), Positives = 50/55 (90%)
 Frame = -3

Query: 528 NLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLTKEKRITKRKH 364
           NLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT E +  + KH
Sbjct: 208 NLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLTHEVKGARDKH 262