BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00005339
         (1261 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI27869.3| unnamed protein product [Vitis vinifera]              249   3e-71
ref|XP_002279095.1| PREDICTED: cleavage and polyadenylation spec...   249   3e-71
ref|XP_002514092.1| pre-mRNA cleavage factor im, 25kD subunit, p...   241   3e-69
ref|XP_002308275.1| predicted protein [Populus trichocarpa] gi|2...   233   8e-68
ref|XP_004141062.1| PREDICTED: cleavage and polyadenylation spec...   231   3e-67

>emb|CBI27869.3| unnamed protein product [Vitis vinifera]
          Length = 291

 Score =  249 bits (635), Expect(2) = 3e-71
 Identities = 114/159 (71%), Positives = 136/159 (85%)
 Frame = -3

Query: 962 YATHGLRTCVEALLVVELHKHPHLLVLQVRNSVFKLPGGRLRPGESEVDGLKRKLSSKLC 783
           Y+ +G RTCV A+++VEL KHPHLL+LQV+NS FKLPGGRLRPGESE++GLKRKLS KL 
Sbjct: 132 YSRYGSRTCVVAVILVELFKHPHLLLLQVKNSFFKLPGGRLRPGESEINGLKRKLSRKLS 191

Query: 782 DDEDGSDTDWEVGECVGMWWRSDFETLAYPYFPTSLRRPKECTKLFLVKLPVSKRLIVPK 603
            +EDG  +DWEVGEC+GMWWR DFETL YPY P +++ PKECTKLFLVKLP S++ IVPK
Sbjct: 192 VNEDGDGSDWEVGECLGMWWRPDFETLLYPYLPPNVKNPKECTKLFLVKLPPSRKFIVPK 251

Query: 602 NLKLLAVPFYGIHENDKTYGQVISGVPMLLSKFIFNIIE 486
           NLKLLA+P   +HENDKTYG +I+GVP LLSKF FNII+
Sbjct: 252 NLKLLAIPLCQLHENDKTYGPIIAGVPQLLSKFSFNIID 290



 Score = 47.8 bits (112), Expect(2) = 3e-71
 Identities = 25/52 (48%), Positives = 34/52 (65%)
 Frame = -1

Query: 1186 SDREMDSSTEQSNRNTSTVNIYPLSNYYFGSKQSLNIKDETQAEHAQRMKAN 1031
            +D +  SS + SN     ++IYPLS YYFGSK  L +K+ET A+   RMK+N
Sbjct: 83   ADGDRSSSGDSSNH---VLDIYPLSCYYFGSKDPLLLKEETLADRILRMKSN 131


>ref|XP_002279095.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
           5-like [Vitis vinifera]
          Length = 284

 Score =  249 bits (635), Expect(2) = 3e-71
 Identities = 114/159 (71%), Positives = 136/159 (85%)
 Frame = -3

Query: 962 YATHGLRTCVEALLVVELHKHPHLLVLQVRNSVFKLPGGRLRPGESEVDGLKRKLSSKLC 783
           Y+ +G RTCV A+++VEL KHPHLL+LQV+NS FKLPGGRLRPGESE++GLKRKLS KL 
Sbjct: 125 YSRYGSRTCVVAVILVELFKHPHLLLLQVKNSFFKLPGGRLRPGESEINGLKRKLSRKLS 184

Query: 782 DDEDGSDTDWEVGECVGMWWRSDFETLAYPYFPTSLRRPKECTKLFLVKLPVSKRLIVPK 603
            +EDG  +DWEVGEC+GMWWR DFETL YPY P +++ PKECTKLFLVKLP S++ IVPK
Sbjct: 185 VNEDGDGSDWEVGECLGMWWRPDFETLLYPYLPPNVKNPKECTKLFLVKLPPSRKFIVPK 244

Query: 602 NLKLLAVPFYGIHENDKTYGQVISGVPMLLSKFIFNIIE 486
           NLKLLA+P   +HENDKTYG +I+GVP LLSKF FNII+
Sbjct: 245 NLKLLAIPLCQLHENDKTYGPIIAGVPQLLSKFSFNIID 283



 Score = 47.8 bits (112), Expect(2) = 3e-71
 Identities = 25/52 (48%), Positives = 34/52 (65%)
 Frame = -1

Query: 1186 SDREMDSSTEQSNRNTSTVNIYPLSNYYFGSKQSLNIKDETQAEHAQRMKAN 1031
            +D +  SS + SN     ++IYPLS YYFGSK  L +K+ET A+   RMK+N
Sbjct: 76   ADGDRSSSGDSSNH---VLDIYPLSCYYFGSKDPLLLKEETLADRILRMKSN 124


>ref|XP_002514092.1| pre-mRNA cleavage factor im, 25kD subunit, putative [Ricinus
           communis] gi|223546548|gb|EEF48046.1| pre-mRNA cleavage
           factor im, 25kD subunit, putative [Ricinus communis]
          Length = 214

 Score =  241 bits (616), Expect(2) = 3e-69
 Identities = 112/158 (70%), Positives = 133/158 (84%)
 Frame = -3

Query: 962 YATHGLRTCVEALLVVELHKHPHLLVLQVRNSVFKLPGGRLRPGESEVDGLKRKLSSKLC 783
           Y  HGLRTCVEA+++VEL KHPHLL+LQ++NS+FKLPGGR+RPGES++ GLKRKLS KL 
Sbjct: 57  YLAHGLRTCVEAVILVELFKHPHLLLLQIKNSIFKLPGGRIRPGESDIGGLKRKLSRKLS 116

Query: 782 DDEDGSDTDWEVGECVGMWWRSDFETLAYPYFPTSLRRPKECTKLFLVKLPVSKRLIVPK 603
           +++D   TDWEVGEC+GMWWR DFETL YPY P +L+ PKECTKLFLV+LP S + IVPK
Sbjct: 117 NNQD--QTDWEVGECLGMWWRPDFETLLYPYLPPNLKTPKECTKLFLVRLPTSCKFIVPK 174

Query: 602 NLKLLAVPFYGIHENDKTYGQVISGVPMLLSKFIFNII 489
           NLKLLAVP   IH+N KTYG +ISGVP LLSK+ F II
Sbjct: 175 NLKLLAVPLSQIHDNHKTYGGIISGVPQLLSKYSFRII 212



 Score = 48.1 bits (113), Expect(2) = 3e-69
 Identities = 25/56 (44%), Positives = 33/56 (58%), Gaps = 3/56 (5%)
 Frame = -1

Query: 1189 MSDREM---DSSTEQSNRNTSTVNIYPLSNYYFGSKQSLNIKDETQAEHAQRMKAN 1031
            M D E+   ++  E S      ++IYPLS YYFGSK  L  +DET  +  QRMK+N
Sbjct: 1    MGDHEVVVNNNHHEASRDQGFVLDIYPLSRYYFGSKDPLPFRDETLVDRVQRMKSN 56


>ref|XP_002308275.1| predicted protein [Populus trichocarpa] gi|222854251|gb|EEE91798.1|
           predicted protein [Populus trichocarpa]
          Length = 210

 Score =  233 bits (593), Expect(2) = 8e-68
 Identities = 110/157 (70%), Positives = 132/157 (84%)
 Frame = -3

Query: 962 YATHGLRTCVEALLVVELHKHPHLLVLQVRNSVFKLPGGRLRPGESEVDGLKRKLSSKLC 783
           ++  GLRT V+A+++VEL KHPHLL+LQVRN+ FKLPGGRLRPGES++DGL+RKLS  L 
Sbjct: 53  FSARGLRTSVQAVMLVELFKHPHLLLLQVRNAFFKLPGGRLRPGESDIDGLQRKLSRMLS 112

Query: 782 DDEDGSDTDWEVGECVGMWWRSDFETLAYPYFPTSLRRPKECTKLFLVKLPVSKRLIVPK 603
            +ED +D  WEVG+C+GMWWRSDFETL YPY P +L+ PKECTKL++VKLP S++ IVPK
Sbjct: 113 VNEDETD-HWEVGDCLGMWWRSDFETLLYPYLPPNLKVPKECTKLYVVKLPASRKFIVPK 171

Query: 602 NLKLLAVPFYGIHENDKTYGQVISGVPMLLSKFIFNI 492
           NLKLLAVP   +HEN KTYG VISGVP LLSKF FNI
Sbjct: 172 NLKLLAVPLCQVHENHKTYGPVISGVPQLLSKFSFNI 208



 Score = 52.4 bits (124), Expect(2) = 8e-68
 Identities = 21/44 (47%), Positives = 31/44 (70%)
 Frame = -1

Query: 1162 TEQSNRNTSTVNIYPLSNYYFGSKQSLNIKDETQAEHAQRMKAN 1031
            T+ +N  ++ + IYPL +YYFGSK  +  +DET A+  QRMK+N
Sbjct: 9    TDNNNHQSTVIEIYPLGSYYFGSKDPIAFRDETIADRVQRMKSN 52


>ref|XP_004141062.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
           5-like [Cucumis sativus]
           gi|449488056|ref|XP_004157928.1| PREDICTED: cleavage and
           polyadenylation specificity factor subunit 5-like
           [Cucumis sativus]
          Length = 217

 Score =  231 bits (589), Expect(2) = 3e-67
 Identities = 105/158 (66%), Positives = 128/158 (81%)
 Frame = -3

Query: 962 YATHGLRTCVEALLVVELHKHPHLLVLQVRNSVFKLPGGRLRPGESEVDGLKRKLSSKLC 783
           YA HGLRTCVEA+++VEL KHPHLL+ Q+RNS+FKLPGGR+RP ES++DGL RKL+ KL 
Sbjct: 58  YAAHGLRTCVEAVMLVELFKHPHLLLFQIRNSIFKLPGGRIRPNESDIDGLTRKLTKKLS 117

Query: 782 DDEDGSDTDWEVGECVGMWWRSDFETLAYPYFPTSLRRPKECTKLFLVKLPVSKRLIVPK 603
            +     + WEV EC+GMWWR DFETL +PY  T+++  KECTKLFLVKLP S++ +VPK
Sbjct: 118 ANGASDASHWEVSECLGMWWRPDFETLLFPYLSTNVKGAKECTKLFLVKLPESRKFVVPK 177

Query: 602 NLKLLAVPFYGIHENDKTYGQVISGVPMLLSKFIFNII 489
           NLKL+AVP   IHEN KTYG +ISG+P LLSKF FNII
Sbjct: 178 NLKLIAVPLCQIHENHKTYGPIISGIPQLLSKFSFNII 215



 Score = 52.0 bits (123), Expect(2) = 3e-67
 Identities = 24/48 (50%), Positives = 31/48 (64%)
 Frame = -1

Query: 1174 MDSSTEQSNRNTSTVNIYPLSNYYFGSKQSLNIKDETQAEHAQRMKAN 1031
            +D     S    S ++IYPLSNYYFGSK+ L  KDET ++   RMK+N
Sbjct: 10   IDDDDASSAHQLSYIDIYPLSNYYFGSKEPLLFKDETLSDRVLRMKSN 57