BLASTX nr result
ID: Coptis25_contig00005322
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis25_contig00005322
(1919 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002517863.1| U3 small nucleolar RNA (U3 snorna) associate... 559 0.0
ref|XP_002276985.1| PREDICTED: DDB1- and CUL4-associated factor ... 551 0.0
ref|XP_002327907.1| predicted protein [Populus trichocarpa] gi|2... 551 0.0
ref|XP_002310410.1| predicted protein [Populus trichocarpa] gi|2... 548 0.0
ref|XP_003519367.1| PREDICTED: DDB1- and CUL4-associated factor ... 549 0.0
>ref|XP_002517863.1| U3 small nucleolar RNA (U3 snorna) associated protein, putative
[Ricinus communis] gi|223542845|gb|EEF44381.1| U3 small
nucleolar RNA (U3 snorna) associated protein, putative
[Ricinus communis]
Length = 452
Score = 559 bits (1441), Expect(2) = 0.0
Identities = 267/346 (77%), Positives = 299/346 (86%)
Frame = +1
Query: 19 MRAKTISRSKDVITRERSCDIVRVWRNYDPILRPQANVTECVRASTAAKLDKIFARPFLW 198
M+ K ISRS D TRERS D+ RV+RN+DP LR Q E VRA AAKLDKIFARPF+
Sbjct: 1 MKVKVISRSSDDFTRERSQDLQRVFRNFDPSLRTQEKSIEYVRALNAAKLDKIFARPFIG 60
Query: 199 AMEGHVDAVSCMAKNPSYLKGMFSGSMDGDIRLWDLSSRRAVCQFPGHQGAVQGLTTSTD 378
AM+GH+DA+SCMAKNP+YLKG+FSGSMDGDIRLWD++SRR VCQFPGHQGAV+GLT STD
Sbjct: 61 AMDGHIDAISCMAKNPNYLKGIFSGSMDGDIRLWDIASRRTVCQFPGHQGAVRGLTASTD 120
Query: 379 GHVLVSCGTDCTVRLWKVPVTELMDYSSDHSSQQPRTPLAIYVRENAFWAVDHQWDGVHF 558
G +L+SCGTDCT RLWKVPV +M+ SD S + P AIYV +NAFW VDHQWDG F
Sbjct: 121 GCILISCGTDCTARLWKVPVATMME--SDGPSNRSAEPQAIYVGKNAFWGVDHQWDGELF 178
Query: 559 ATGGAQVDIWNVNRSEPVSSFGWVKDTTISVRFNPGVPNLLATSSSDRSITLYDVRLSSP 738
ATGGAQVDIWN NRS+PV+SF W DT ISVRFNPG PNLLA S+SDRSITLYD+R+SSP
Sbjct: 179 ATGGAQVDIWNHNRSQPVNSFEWGTDTVISVRFNPGEPNLLAASASDRSITLYDLRVSSP 238
Query: 739 LTKLIMKTKTNSISWNPMEPMNFTAANEDCNCYSYDARKLDEAKCVHEDHVSAVMDIDYS 918
KLIM+T+TNSI+WNPMEPMNFTAANEDCNCYS+DARKLDEAKCVH+DHVSAVMDID+S
Sbjct: 239 ARKLIMRTRTNSIAWNPMEPMNFTAANEDCNCYSFDARKLDEAKCVHKDHVSAVMDIDFS 298
Query: 919 PTGREFVTGSYDRSVRIFQYNGGHSREIYHSKRMQRVFSVKFSCDG 1056
PTGREFVTGSYDR+VRIF YNGGHSREIYH+KRMQRVF VKFSCDG
Sbjct: 299 PTGREFVTGSYDRTVRIFPYNGGHSREIYHTKRMQRVFCVKFSCDG 344
Score = 149 bits (377), Expect(2) = 0.0
Identities = 67/95 (70%), Positives = 84/95 (88%)
Frame = +2
Query: 1124 DGTYVISGSDDSNLRLWKAEASEQLGILLPRERKKHEHDEAVKNRYKHLPGVKRIMRHRH 1303
DG+Y+ISGSDD+NLRLWKA+ASEQLG+LLPRERK+HE++EAVKNRYKHLP +KRI+RHRH
Sbjct: 343 DGSYIISGSDDTNLRLWKAKASEQLGVLLPRERKRHEYNEAVKNRYKHLPEIKRIVRHRH 402
Query: 1304 LPKSTYNAVVMRRTMIEAQRKKYKRKEAHSAPGSM 1408
LPK Y A +RRT+ EA+++K R+ AHS PGS+
Sbjct: 403 LPKPIYKAAEIRRTVTEAEKRKEDRRRAHSTPGSV 437
>ref|XP_002276985.1| PREDICTED: DDB1- and CUL4-associated factor 13 [Vitis vinifera]
gi|302143337|emb|CBI21898.3| unnamed protein product
[Vitis vinifera]
Length = 452
Score = 551 bits (1420), Expect(2) = 0.0
Identities = 260/345 (75%), Positives = 297/345 (86%)
Frame = +1
Query: 19 MRAKTISRSKDVITRERSCDIVRVWRNYDPILRPQANVTECVRASTAAKLDKIFARPFLW 198
M+ K ISRS D TRERS D+ RV+RN+DP LR Q E VRA AAKLDK+FARPF+
Sbjct: 1 MKVKVISRSTDEFTRERSQDLQRVFRNFDPNLRKQEKAVEYVRALNAAKLDKVFARPFIG 60
Query: 199 AMEGHVDAVSCMAKNPSYLKGMFSGSMDGDIRLWDLSSRRAVCQFPGHQGAVQGLTTSTD 378
AM+GH+D++SCMAKNP+YLKG+FSGSMDGDIRLWD++SRR VCQFPGHQGAV+GLT STD
Sbjct: 61 AMDGHIDSISCMAKNPNYLKGIFSGSMDGDIRLWDIASRRTVCQFPGHQGAVRGLTASTD 120
Query: 379 GHVLVSCGTDCTVRLWKVPVTELMDYSSDHSSQQPRTPLAIYVRENAFWAVDHQWDGVHF 558
G +LVSCGTDCTVRLW VPV + D SD SS PLA++V +NAFW VDHQWDG F
Sbjct: 121 GRILVSCGTDCTVRLWNVPVATISD--SDDSSDNSMKPLAVHVWKNAFWGVDHQWDGNLF 178
Query: 559 ATGGAQVDIWNVNRSEPVSSFGWVKDTTISVRFNPGVPNLLATSSSDRSITLYDVRLSSP 738
AT GAQVDIW+ NRS+PV++F W D+ I+VRFNPG P++LA S+SDRS+ LYD+R+SSP
Sbjct: 179 ATAGAQVDIWDHNRSQPVNTFQWGNDSVIAVRFNPGEPDILAASASDRSLILYDLRMSSP 238
Query: 739 LTKLIMKTKTNSISWNPMEPMNFTAANEDCNCYSYDARKLDEAKCVHEDHVSAVMDIDYS 918
KLIM+TKTNSISWNPMEPMNFTAANEDCNCYSYDARKLDEAKCVH+DHVSAVMDIDYS
Sbjct: 239 ARKLIMRTKTNSISWNPMEPMNFTAANEDCNCYSYDARKLDEAKCVHKDHVSAVMDIDYS 298
Query: 919 PTGREFVTGSYDRSVRIFQYNGGHSREIYHSKRMQRVFSVKFSCD 1053
PTGREFVTGSYDR+VRIFQYNGGHSREIYH+KRMQRVF VKF+CD
Sbjct: 299 PTGREFVTGSYDRTVRIFQYNGGHSREIYHTKRMQRVFCVKFTCD 343
Score = 152 bits (384), Expect(2) = 0.0
Identities = 70/95 (73%), Positives = 85/95 (89%)
Frame = +2
Query: 1124 DGTYVISGSDDSNLRLWKAEASEQLGILLPRERKKHEHDEAVKNRYKHLPGVKRIMRHRH 1303
D +YVISGSDD+NLRLWKA+ASEQLG+LLPRERKKHE+ EAVKNRYKHLP VKRI+RHRH
Sbjct: 343 DASYVISGSDDTNLRLWKAKASEQLGVLLPRERKKHEYHEAVKNRYKHLPEVKRIVRHRH 402
Query: 1304 LPKSTYNAVVMRRTMIEAQRKKYKRKEAHSAPGSM 1408
LPK + A +RRTM EA+R+K ++++AHSAPGS+
Sbjct: 403 LPKPIFKAAALRRTMTEAERRKEEKRKAHSAPGSI 437
>ref|XP_002327907.1| predicted protein [Populus trichocarpa] gi|222837316|gb|EEE75695.1|
predicted protein [Populus trichocarpa]
Length = 452
Score = 551 bits (1420), Expect(2) = 0.0
Identities = 265/345 (76%), Positives = 295/345 (85%)
Frame = +1
Query: 19 MRAKTISRSKDVITRERSCDIVRVWRNYDPILRPQANVTECVRASTAAKLDKIFARPFLW 198
M+ K ISRS D TRERS D+ RV+ N+DP LR Q E RA AAKLDKIFARPF+
Sbjct: 1 MKVKVISRSTDEFTRERSQDLQRVFHNFDPNLRTQEKAVEYQRALNAAKLDKIFARPFIG 60
Query: 199 AMEGHVDAVSCMAKNPSYLKGMFSGSMDGDIRLWDLSSRRAVCQFPGHQGAVQGLTTSTD 378
AM+GH+DAVSCMAKNP+YLKG+FSGSMDGDIRLWD+++RR VCQFPGHQGAV+GLT STD
Sbjct: 61 AMDGHIDAVSCMAKNPNYLKGIFSGSMDGDIRLWDIANRRTVCQFPGHQGAVRGLTASTD 120
Query: 379 GHVLVSCGTDCTVRLWKVPVTELMDYSSDHSSQQPRTPLAIYVRENAFWAVDHQWDGVHF 558
G LVSCGTDCTVRLW VPV +MD SD+ S P A+Y+ ENAFWAVDHQW+G F
Sbjct: 121 GSTLVSCGTDCTVRLWNVPVATIMD--SDNLSDCSSEPRAVYMGENAFWAVDHQWNGDLF 178
Query: 559 ATGGAQVDIWNVNRSEPVSSFGWVKDTTISVRFNPGVPNLLATSSSDRSITLYDVRLSSP 738
AT GAQVDIWN NRS+PV+SF W D+ ISVRFNPG PNLL TS+SDRSI LYD+R+SSP
Sbjct: 179 ATAGAQVDIWNHNRSQPVNSFKWGTDSVISVRFNPGEPNLLVTSASDRSIILYDLRVSSP 238
Query: 739 LTKLIMKTKTNSISWNPMEPMNFTAANEDCNCYSYDARKLDEAKCVHEDHVSAVMDIDYS 918
KLIM+TKTNSISWNPMEPMNFTAANEDCNCYSYDARKL+EAKCVH+DHVSAVMDID+S
Sbjct: 239 ARKLIMRTKTNSISWNPMEPMNFTAANEDCNCYSYDARKLEEAKCVHKDHVSAVMDIDFS 298
Query: 919 PTGREFVTGSYDRSVRIFQYNGGHSREIYHSKRMQRVFSVKFSCD 1053
PTGREFVTGSYDR+VRIFQYNGGHSREIYH+KRMQRVF VKFSCD
Sbjct: 299 PTGREFVTGSYDRTVRIFQYNGGHSREIYHTKRMQRVFCVKFSCD 343
Score = 152 bits (383), Expect(2) = 0.0
Identities = 70/95 (73%), Positives = 87/95 (91%)
Frame = +2
Query: 1124 DGTYVISGSDDSNLRLWKAEASEQLGILLPRERKKHEHDEAVKNRYKHLPGVKRIMRHRH 1303
D +YVISGSDD+NLRLWKA+ASEQLG+LLPRE+K+HE++EA+KNRYKHLP VKRI+RHRH
Sbjct: 343 DASYVISGSDDTNLRLWKAKASEQLGVLLPREQKRHEYNEALKNRYKHLPEVKRIVRHRH 402
Query: 1304 LPKSTYNAVVMRRTMIEAQRKKYKRKEAHSAPGSM 1408
LPK Y A V+RR MIEA+R+K +R++AHSAPGS+
Sbjct: 403 LPKPIYKAGVLRRVMIEAERRKDQRRKAHSAPGSI 437
>ref|XP_002310410.1| predicted protein [Populus trichocarpa] gi|222853313|gb|EEE90860.1|
predicted protein [Populus trichocarpa]
Length = 452
Score = 548 bits (1411), Expect(2) = 0.0
Identities = 263/345 (76%), Positives = 294/345 (85%)
Frame = +1
Query: 19 MRAKTISRSKDVITRERSCDIVRVWRNYDPILRPQANVTECVRASTAAKLDKIFARPFLW 198
M+ K ISRS D TRERS D+ RV+ N+DP LR Q E RA AAKLDKIFARPF+
Sbjct: 1 MKVKVISRSTDEFTRERSQDLQRVFHNFDPNLRTQEKAVEYQRALNAAKLDKIFARPFIG 60
Query: 199 AMEGHVDAVSCMAKNPSYLKGMFSGSMDGDIRLWDLSSRRAVCQFPGHQGAVQGLTTSTD 378
AM+GH+DAVSCMAKNP+YLKG+FSGSMDGDIRLWD+++RR VC+FPGHQGAV+GLT STD
Sbjct: 61 AMDGHIDAVSCMAKNPNYLKGIFSGSMDGDIRLWDIANRRTVCRFPGHQGAVRGLTASTD 120
Query: 379 GHVLVSCGTDCTVRLWKVPVTELMDYSSDHSSQQPRTPLAIYVRENAFWAVDHQWDGVHF 558
G LVSCGTDCTVRLW VPV +M+ S +SS P A+Y+ ENA+WAVDHQW G F
Sbjct: 121 GSTLVSCGTDCTVRLWNVPVATIME--SGNSSDCSSEPRAVYMGENAYWAVDHQWSGDLF 178
Query: 559 ATGGAQVDIWNVNRSEPVSSFGWVKDTTISVRFNPGVPNLLATSSSDRSITLYDVRLSSP 738
AT GAQVDIWN NRS+PV+SF W D+ ISVRFNPG PNLLATS+SDRSI LYD+R+SSP
Sbjct: 179 ATAGAQVDIWNHNRSQPVNSFKWGTDSVISVRFNPGEPNLLATSASDRSIMLYDLRVSSP 238
Query: 739 LTKLIMKTKTNSISWNPMEPMNFTAANEDCNCYSYDARKLDEAKCVHEDHVSAVMDIDYS 918
KLIM+TKTNSISWNPMEPMNFTAANEDCNCYSYDARK DEAKCVH+DHVSAVMDID+S
Sbjct: 239 ARKLIMRTKTNSISWNPMEPMNFTAANEDCNCYSYDARKFDEAKCVHKDHVSAVMDIDFS 298
Query: 919 PTGREFVTGSYDRSVRIFQYNGGHSREIYHSKRMQRVFSVKFSCD 1053
PTGREFVTGSYDR+VRIFQYNGGHSREIYH+KRMQRVF VKFSCD
Sbjct: 299 PTGREFVTGSYDRTVRIFQYNGGHSREIYHTKRMQRVFCVKFSCD 343
Score = 148 bits (373), Expect(2) = 0.0
Identities = 69/95 (72%), Positives = 85/95 (89%)
Frame = +2
Query: 1124 DGTYVISGSDDSNLRLWKAEASEQLGILLPRERKKHEHDEAVKNRYKHLPGVKRIMRHRH 1303
D +YVISGSDD+NLRLWKA+ASEQLGILLPRE+++HE++EA+K RYKHLP VKRI+RHRH
Sbjct: 343 DASYVISGSDDTNLRLWKAKASEQLGILLPREQRRHEYNEALKTRYKHLPEVKRIVRHRH 402
Query: 1304 LPKSTYNAVVMRRTMIEAQRKKYKRKEAHSAPGSM 1408
LPK Y A V+RR MIEA+R+K R++AHSAPGS+
Sbjct: 403 LPKPIYKAGVLRRVMIEAERRKDHRRKAHSAPGSI 437
>ref|XP_003519367.1| PREDICTED: DDB1- and CUL4-associated factor 13-like [Glycine max]
Length = 452
Score = 549 bits (1414), Expect(2) = 0.0
Identities = 260/346 (75%), Positives = 295/346 (85%)
Frame = +1
Query: 19 MRAKTISRSKDVITRERSCDIVRVWRNYDPILRPQANVTECVRASTAAKLDKIFARPFLW 198
M+ K ISRS D TRERS D+ RV+RNYDP LRPQ E VRA A KLDKIFARPF+
Sbjct: 1 MKVKVISRSVDEFTRERSQDLQRVFRNYDPSLRPQEKAVEYVRAVNAVKLDKIFARPFIG 60
Query: 199 AMEGHVDAVSCMAKNPSYLKGMFSGSMDGDIRLWDLSSRRAVCQFPGHQGAVQGLTTSTD 378
A++GHVDAVSCM +NPS LKG+FS SMDGDIRLWDL++RR VCQFPGH+GAV+GLT STD
Sbjct: 61 ALDGHVDAVSCMTRNPSQLKGIFSSSMDGDIRLWDLAARRTVCQFPGHRGAVRGLTASTD 120
Query: 379 GHVLVSCGTDCTVRLWKVPVTELMDYSSDHSSQQPRTPLAIYVRENAFWAVDHQWDGVHF 558
G +LVSCGTDCT+RLW VP+T LM+ SD S++ P ++YV +NAFW DHQWDG HF
Sbjct: 121 GRILVSCGTDCTIRLWSVPITTLME--SDDSTKSTVEPASVYVWKNAFWGADHQWDGEHF 178
Query: 559 ATGGAQVDIWNVNRSEPVSSFGWVKDTTISVRFNPGVPNLLATSSSDRSITLYDVRLSSP 738
AT GAQVDIWN NRS+P++SF W DT ISVRFNPG PNLLATS+SDRSI LYD+R+SSP
Sbjct: 179 ATAGAQVDIWNHNRSQPINSFEWGSDTVISVRFNPGEPNLLATSASDRSIILYDLRMSSP 238
Query: 739 LTKLIMKTKTNSISWNPMEPMNFTAANEDCNCYSYDARKLDEAKCVHEDHVSAVMDIDYS 918
+ K+IM TKTNSI WNPMEP+NFTAANED NCYSYDARKLDEAKCVH DHVSAVMD+DYS
Sbjct: 239 VRKMIMMTKTNSICWNPMEPINFTAANEDGNCYSYDARKLDEAKCVHRDHVSAVMDVDYS 298
Query: 919 PTGREFVTGSYDRSVRIFQYNGGHSREIYHSKRMQRVFSVKFSCDG 1056
PTGREFVTGSYDR+VRIFQYNGGHS+EIYH+KRMQRVF+VKFS DG
Sbjct: 299 PTGREFVTGSYDRTVRIFQYNGGHSKEIYHTKRMQRVFAVKFSGDG 344
Score = 140 bits (354), Expect(2) = 0.0
Identities = 63/95 (66%), Positives = 81/95 (85%)
Frame = +2
Query: 1124 DGTYVISGSDDSNLRLWKAEASEQLGILLPRERKKHEHDEAVKNRYKHLPGVKRIMRHRH 1303
DG+YVISGSDD+NLRLWKA+ASEQLG++LPRERKKHE+ EA+K RYKHLP V RI RHRH
Sbjct: 343 DGSYVISGSDDTNLRLWKAKASEQLGVILPRERKKHEYHEAIKKRYKHLPEVNRIARHRH 402
Query: 1304 LPKSTYNAVVMRRTMIEAQRKKYKRKEAHSAPGSM 1408
LP+ + A + R M +A+R+K ++++AHSAPGS+
Sbjct: 403 LPRPIFKASALMRVMADAKRRKEEKRKAHSAPGSI 437