BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00005274
         (1480 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002280604.1| PREDICTED: 30S ribosomal protein S1, chlorop...   684   0.0  
sp|P29344.1|RR1_SPIOL RecName: Full=30S ribosomal protein S1, ch...   670   0.0  
ref|XP_002311368.1| predicted protein [Populus trichocarpa] gi|1...   659   0.0  
ref|XP_004147619.1| PREDICTED: 30S ribosomal protein S1, chlorop...   657   0.0  
ref|XP_002519282.1| tex protein-relatedtranscription accessory p...   655   0.0  

>ref|XP_002280604.1| PREDICTED: 30S ribosomal protein S1, chloroplastic [Vitis vinifera]
            gi|296083203|emb|CBI22839.3| unnamed protein product
            [Vitis vinifera]
          Length = 410

 Score =  684 bits (1765), Expect = 0.0
 Identities = 354/406 (87%), Positives = 374/406 (92%), Gaps = 1/406 (0%)
 Frame = -1

Query: 1423 LAHQFSGLRCPPLSSHLSKKQPFTPNK-QKSVFFPIVSAVAISNAQTKERQRLKEMFEEA 1247
            LA QF+GLRCPP+SS    K PF+P + QK  F  IVSAVAISNAQTKER +LKEMFE+A
Sbjct: 4    LAQQFTGLRCPPISSSRLSK-PFSPKQPQKPSFVRIVSAVAISNAQTKERLKLKEMFEDA 62

Query: 1246 YERCRTAPMEGISFTVEDFHNALEKYDFNSEIGTKVKGTVFCTEANGALVDITAKSSAYL 1067
            YERCRTAP EG+SF+ +DF++AL+KYDFNSEIGTKVKGTVFCT+ NGALVDITAKSSAYL
Sbjct: 63   YERCRTAPTEGVSFSADDFYSALDKYDFNSEIGTKVKGTVFCTDTNGALVDITAKSSAYL 122

Query: 1066 PVQEACIHKIKHVEEAGIFPGVREEFVIIGENEADDSLILSLRSIQYDLAWERCRQLQAE 887
            PV EACIHKIKHVEEAGI PGVREEFVIIGENEADDSLILSLRSIQYDLAWERCRQLQAE
Sbjct: 123  PVYEACIHKIKHVEEAGIVPGVREEFVIIGENEADDSLILSLRSIQYDLAWERCRQLQAE 182

Query: 886  DVVVKGKVISGNKGGVVAIVEGLRGFVPFSQISSKSAAXXXXXXXXXLKFVEVDEEQSRL 707
            DVVVKGKV+  NKGGVVA+VEGLRGFVPFSQISSK+ A         +KFVEVDEEQSRL
Sbjct: 183  DVVVKGKVVGANKGGVVALVEGLRGFVPFSQISSKTTAEELLDKELPVKFVEVDEEQSRL 242

Query: 706  VLSNRKAMADSQAQLGIGSVVTGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATV 527
            VLSNRKAMADSQAQLGIGSVVTGTVQSLKPYGAFIDIGGINGLLHVSQISHDRV+DIATV
Sbjct: 243  VLSNRKAMADSQAQLGIGSVVTGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVSDIATV 302

Query: 526  LQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTFRQRIAQA 347
            LQPGD LKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTFRQRIAQA
Sbjct: 303  LQPGDILKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTFRQRIAQA 362

Query: 346  EAMARADMLRFQPESGLTLSSDGILGPLSPDLPAEGLDLSDVPPAE 209
            EAMARADMLRFQPESGLTL+SDGILGP+S DLPAEGLDLSDVPPAE
Sbjct: 363  EAMARADMLRFQPESGLTLNSDGILGPVSADLPAEGLDLSDVPPAE 408


>sp|P29344.1|RR1_SPIOL RecName: Full=30S ribosomal protein S1, chloroplastic; AltName:
            Full=CS1; Flags: Precursor gi|18060|emb|CAA46927.1|
            ribosomal protein S1 [Spinacia oleracea]
            gi|170143|gb|AAA34045.1| chloroplast ribosomal protein S1
            [Spinacia oleracea]
          Length = 411

 Score =  670 bits (1728), Expect = 0.0
 Identities = 348/409 (85%), Positives = 378/409 (92%), Gaps = 3/409 (0%)
 Frame = -1

Query: 1429 SSLAHQFSG-LRCPPLS-SHLSKKQPFTPNKQ-KSVFFPIVSAVAISNAQTKERQRLKEM 1259
            +SLA Q +G LRCPPLS S+LSK  PF+P    K  F PIVSAVA+SNAQT+ERQ+LK++
Sbjct: 2    ASLAQQLAGGLRCPPLSNSNLSK--PFSPKHTLKPRFSPIVSAVAVSNAQTRERQKLKQL 59

Query: 1258 FEEAYERCRTAPMEGISFTVEDFHNALEKYDFNSEIGTKVKGTVFCTEANGALVDITAKS 1079
            FE+AYERCR APMEG+SFT++DFH AL+KYDFNSE+G++VKGTVFCT+ANGALVDITAKS
Sbjct: 60   FEDAYERCRNAPMEGVSFTIDDFHTALDKYDFNSEMGSRVKGTVFCTDANGALVDITAKS 119

Query: 1078 SAYLPVQEACIHKIKHVEEAGIFPGVREEFVIIGENEADDSLILSLRSIQYDLAWERCRQ 899
            SAYLP+ EACI++IK+VEEAGI PGVREEFVIIGENEADDSLILSLR IQY+LAWERCRQ
Sbjct: 120  SAYLPLAEACIYRIKNVEEAGIIPGVREEFVIIGENEADDSLILSLRQIQYELAWERCRQ 179

Query: 898  LQAEDVVVKGKVISGNKGGVVAIVEGLRGFVPFSQISSKSAAXXXXXXXXXLKFVEVDEE 719
            LQAEDVVVKGK++  NKGGVVA+VEGLRGFVPFSQISSKS+A         LKFVEVDEE
Sbjct: 180  LQAEDVVVKGKIVGANKGGVVALVEGLRGFVPFSQISSKSSAEELLEKEIPLKFVEVDEE 239

Query: 718  QSRLVLSNRKAMADSQAQLGIGSVVTGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVAD 539
            QSRLV+SNRKAMADSQAQLGIGSVVTGTVQSLKPYGAFIDIGGINGLLHVSQISHDRV+D
Sbjct: 240  QSRLVMSNRKAMADSQAQLGIGSVVTGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVSD 299

Query: 538  IATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTFRQR 359
            IATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTFRQR
Sbjct: 300  IATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTFRQR 359

Query: 358  IAQAEAMARADMLRFQPESGLTLSSDGILGPLSPDLPAEGLDLSDVPPA 212
            IAQAEAMARADMLRFQPESGLTLSSDGILGPL+ DLPAEGLDLS VPPA
Sbjct: 360  IAQAEAMARADMLRFQPESGLTLSSDGILGPLTSDLPAEGLDLSVVPPA 408


>ref|XP_002311368.1| predicted protein [Populus trichocarpa] gi|118485696|gb|ABK94698.1|
            unknown [Populus trichocarpa] gi|222851188|gb|EEE88735.1|
            predicted protein [Populus trichocarpa]
          Length = 421

 Score =  659 bits (1701), Expect = 0.0
 Identities = 340/409 (83%), Positives = 372/409 (90%), Gaps = 2/409 (0%)
 Frame = -1

Query: 1429 SSLAHQFSGLRCPPLS-SHLSKKQP-FTPNKQKSVFFPIVSAVAISNAQTKERQRLKEMF 1256
            +SLA QF+GLRCPP+S S L+++   F+  K+ + F     AVAISNAQTKER++LK++F
Sbjct: 2    ASLAQQFAGLRCPPISISRLTERAATFSKPKRAANFVVTAKAVAISNAQTKEREKLKQLF 61

Query: 1255 EEAYERCRTAPMEGISFTVEDFHNALEKYDFNSEIGTKVKGTVFCTEANGALVDITAKSS 1076
            EEAYERCRTAPMEG+SFTVEDFH+AL+ YDFNSEIGT+VKGTVF T+ NGALVDITAKSS
Sbjct: 62   EEAYERCRTAPMEGVSFTVEDFHSALDAYDFNSEIGTRVKGTVFMTDNNGALVDITAKSS 121

Query: 1075 AYLPVQEACIHKIKHVEEAGIFPGVREEFVIIGENEADDSLILSLRSIQYDLAWERCRQL 896
            AYLPVQEA IH+IK +EEAGI PG+REEFVIIGENEADDSLILSLRSI Y+LAWERCRQL
Sbjct: 122  AYLPVQEASIHRIKRLEEAGIVPGMREEFVIIGENEADDSLILSLRSIHYELAWERCRQL 181

Query: 895  QAEDVVVKGKVISGNKGGVVAIVEGLRGFVPFSQISSKSAAXXXXXXXXXLKFVEVDEEQ 716
            QAEDV+VKGKV+ GNKGG+VA+VEGLRGFVPFSQISSKS           LKFV+VDEEQ
Sbjct: 182  QAEDVIVKGKVVGGNKGGLVAVVEGLRGFVPFSQISSKSTPEELLDKEFPLKFVDVDEEQ 241

Query: 715  SRLVLSNRKAMADSQAQLGIGSVVTGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADI 536
            SRL+LSNRKAMADSQAQLGIGSVVTGTVQSLKPYGAFIDIGGINGLLHVSQISHDRV+DI
Sbjct: 242  SRLILSNRKAMADSQAQLGIGSVVTGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVSDI 301

Query: 535  ATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTFRQRI 356
            ATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTFRQRI
Sbjct: 302  ATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTFRQRI 361

Query: 355  AQAEAMARADMLRFQPESGLTLSSDGILGPLSPDLPAEGLDLSDVPPAE 209
            AQAEAMARADMLRFQPESGLTLSSDGIL PL+ D+PAEGLDLSDV PA+
Sbjct: 362  AQAEAMARADMLRFQPESGLTLSSDGILSPLNSDMPAEGLDLSDVSPAD 410


>ref|XP_004147619.1| PREDICTED: 30S ribosomal protein S1, chloroplastic-like [Cucumis
            sativus] gi|449517357|ref|XP_004165712.1| PREDICTED: 30S
            ribosomal protein S1, chloroplastic-like [Cucumis
            sativus]
          Length = 413

 Score =  657 bits (1695), Expect = 0.0
 Identities = 339/412 (82%), Positives = 372/412 (90%), Gaps = 5/412 (1%)
 Frame = -1

Query: 1429 SSLAHQFSGLRCPPLSSHLSKKQPFTPNK--QKSVFFPIVSAVA---ISNAQTKERQRLK 1265
            +S+A QF+GLRC PLSS    K PF+      KS   P+ +AV    I + QT+ER +LK
Sbjct: 2    ASMAQQFTGLRCAPLSSSRLSK-PFSSKHFLNKSRSLPVQAAVISGPIPSPQTRERFKLK 60

Query: 1264 EMFEEAYERCRTAPMEGISFTVEDFHNALEKYDFNSEIGTKVKGTVFCTEANGALVDITA 1085
            E+FEEAYERCR AP+EGISFT+EDFH ALEKYDF+SE+GTKVKGTVFCT+ NGALVDITA
Sbjct: 61   EVFEEAYERCRNAPVEGISFTLEDFHAALEKYDFDSELGTKVKGTVFCTDNNGALVDITA 120

Query: 1084 KSSAYLPVQEACIHKIKHVEEAGIFPGVREEFVIIGENEADDSLILSLRSIQYDLAWERC 905
            KSSAYLP+QEACIH+IKHVEEAG+FPG+REEFVIIGENE+DDSLILSLRSIQYDLAWERC
Sbjct: 121  KSSAYLPLQEACIHRIKHVEEAGVFPGLREEFVIIGENESDDSLILSLRSIQYDLAWERC 180

Query: 904  RQLQAEDVVVKGKVISGNKGGVVAIVEGLRGFVPFSQISSKSAAXXXXXXXXXLKFVEVD 725
            RQLQAEDVVVKGKV+  NKGGVVA+VEGLRGFVPFSQIS+KS A         LKFVEVD
Sbjct: 181  RQLQAEDVVVKGKVVDANKGGVVAVVEGLRGFVPFSQISTKSNAEELLSKELPLKFVEVD 240

Query: 724  EEQSRLVLSNRKAMADSQAQLGIGSVVTGTVQSLKPYGAFIDIGGINGLLHVSQISHDRV 545
            EEQSRLVLSNRKAMADSQAQLGIGSVVTGTVQSLKPYGAFIDIGGINGLLHVSQISHDR+
Sbjct: 241  EEQSRLVLSNRKAMADSQAQLGIGSVVTGTVQSLKPYGAFIDIGGINGLLHVSQISHDRI 300

Query: 544  ADIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTFR 365
            +DIATVLQPGD+LKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTFR
Sbjct: 301  SDIATVLQPGDSLKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTFR 360

Query: 364  QRIAQAEAMARADMLRFQPESGLTLSSDGILGPLSPDLPAEGLDLSDVPPAE 209
            QRIAQAEA+ARADMLRFQPESGLTL++DGILGP++P+LP EGLDL+DVPPAE
Sbjct: 361  QRIAQAEALARADMLRFQPESGLTLTTDGILGPITPELPVEGLDLNDVPPAE 412


>ref|XP_002519282.1| tex protein-relatedtranscription accessory protein, putative [Ricinus
            communis] gi|223541597|gb|EEF43146.1| tex
            protein-relatedtranscription accessory protein, putative
            [Ricinus communis]
          Length = 412

 Score =  655 bits (1690), Expect = 0.0
 Identities = 344/412 (83%), Positives = 374/412 (90%), Gaps = 5/412 (1%)
 Frame = -1

Query: 1429 SSLAHQFSGLRCPPLSS-HLSKKQPF---TPNKQKSVFFPIVSAVAISNAQTKERQRLKE 1262
            +SLA QF+GLRC  LS+  ++KK      +   +KS F  +VSAVAISNAQTKER++LK+
Sbjct: 2    ASLAQQFTGLRCTALSNCRVTKKASSLLSSSRPRKSRF--VVSAVAISNAQTKEREKLKQ 59

Query: 1261 MFEEAYERCRTAPMEGISFTVEDFHNALEKYDFNSEIGTKVKGTVFCTEANGALVDITAK 1082
            +FE+AYERCRTAPMEG++FT EDFH+ALEKYDFNSEIGT VKGTVF T+ANGA+VDITAK
Sbjct: 60   LFEDAYERCRTAPMEGVAFTAEDFHSALEKYDFNSEIGTTVKGTVFMTDANGAVVDITAK 119

Query: 1081 SSAYLPVQEACIHKIKHVEEAGIFPGVREEFVIIGENEADDSLILSLRSIQYDLAWERCR 902
            SSAYLPVQEACIHKIKHVEEAGI PG+ +EFVIIGENEADDSLILSLR+IQYDL+WERCR
Sbjct: 120  SSAYLPVQEACIHKIKHVEEAGIVPGLTQEFVIIGENEADDSLILSLRAIQYDLSWERCR 179

Query: 901  QLQAEDVVVKGKVISGNKGGVVAIVEG-LRGFVPFSQISSKSAAXXXXXXXXXLKFVEVD 725
            QLQAEDV+VKGKV+  NKGGVVAIVEG LRGFVPFSQISSKS A         LKFV+VD
Sbjct: 180  QLQAEDVIVKGKVVGANKGGVVAIVEGGLRGFVPFSQISSKSTAEELLEKELPLKFVDVD 239

Query: 724  EEQSRLVLSNRKAMADSQAQLGIGSVVTGTVQSLKPYGAFIDIGGINGLLHVSQISHDRV 545
            EEQSRLVLSNRKAMADSQAQLGIGSVV GTVQSLKPYGAFIDIGGINGLLHVSQISHDRV
Sbjct: 240  EEQSRLVLSNRKAMADSQAQLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRV 299

Query: 544  ADIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTFR 365
            +DIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTFR
Sbjct: 300  SDIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTFR 359

Query: 364  QRIAQAEAMARADMLRFQPESGLTLSSDGILGPLSPDLPAEGLDLSDVPPAE 209
            QRIAQAEAMARADMLRFQPESGL+LSSDGILGP++ D+PAEGLDLSDVP AE
Sbjct: 360  QRIAQAEAMARADMLRFQPESGLSLSSDGILGPVTSDMPAEGLDLSDVPSAE 411