BLASTX nr result

ID: Coptis25_contig00005238 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00005238
         (1478 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002263239.1| PREDICTED: F-box/kelch-repeat protein OR23-l...   494   e-137
emb|CBI37083.3| unnamed protein product [Vitis vinifera]              478   e-132
ref|XP_002300788.1| predicted protein [Populus trichocarpa] gi|2...   476   e-132
ref|XP_002307636.1| predicted protein [Populus trichocarpa] gi|2...   474   e-131
ref|XP_002521014.1| conserved hypothetical protein [Ricinus comm...   456   e-126

>ref|XP_002263239.1| PREDICTED: F-box/kelch-repeat protein OR23-like [Vitis vinifera]
          Length = 429

 Score =  494 bits (1273), Expect = e-137
 Identities = 258/417 (61%), Positives = 300/417 (71%), Gaps = 11/417 (2%)
 Frame = -2

Query: 1438 TSVCSSSNSQV-ETLALT-------TLIPNLPNDXXXXXXXXXXXSHHSRLKPTCKSWKH 1283
            +SV SSS+  + ETLALT       TLIP LPND           S  +RLK   KSWK 
Sbjct: 12   SSVSSSSSPPIDETLALTLTLTLNLTLIPGLPNDVSALILSMIPYSCLARLKSISKSWKL 71

Query: 1282 FFSSKPLNFSLRQKFH-SHLLCLFPQDPSISPPFLFDPKNLAWRPIPPMPCNSQLYGLTN 1106
            F SSK L  SLRQ  H S LLCLFPQDP+I+ PFLFDPK LAW P+PP+P N  +YGL N
Sbjct: 72   FLSSKTL-ISLRQNNHQSQLLCLFPQDPAIANPFLFDPKTLAWCPLPPLPINPYVYGLCN 130

Query: 1105 FISIAFNYHLYVIGGSLFDARSFPMDRPSASASIYRFDMFTNHWVCLSPMLSARGSFXXX 926
            F SI+   +LYV+GGSLFD RSFP+DRPS S+S++RF+  T  W  LSPMLS RGSF   
Sbjct: 131  FTSISLGPNLYVLGGSLFDTRSFPLDRPSPSSSVFRFNFLTYSWELLSPMLSPRGSFACV 190

Query: 925  XXXXXXXXXXXG--SRHAMFGAAGSRMSSVERYDVDKNEWVEMDGLPRFRAGCVGFLIGN 752
                       G  SRH MFGAAGSRMSSVERYDV+K+EWV +DGLPRFRAGCVGFLIGN
Sbjct: 191  ALPNSDQIIVAGGGSRHTMFGAAGSRMSSVERYDVEKDEWVSLDGLPRFRAGCVGFLIGN 250

Query: 751  GEEMEFWVMGGYGESRTVSGVFPVDEYYRDGVVLELKSGGKWREIENMWEEGERRRLGNV 572
            GEE EFWVMGGYGESRTVSGVFPVDEYYRD VV+ELK GGKWRE+ +MWE GER RLG +
Sbjct: 251  GEEKEFWVMGGYGESRTVSGVFPVDEYYRDAVVMELKKGGKWRELGDMWEAGERMRLGKI 310

Query: 571  VVLDGEDGEEPGIFMLDGADIFRYDISSNRWQKESSVPRTALVDFCFGFAALDGELHVLS 392
            VV+D E G  P IFMLDG++IFRY ++SNRW KES VPR A  D  FGF  LDGEL+V++
Sbjct: 311  VVVDDEVGGAPAIFMLDGSEIFRYCMTSNRWLKESCVPRKASQDMSFGFVVLDGELYVIT 370

Query: 391  PLYTIDSKENRRPRLQKKGATILIQIYHPKKRAWRSMTTKPPSNCSLDFKTVVMCTI 221
             +  ID  E RR R  K+ AT+ +QIYHPKK+ WR++ T+ P +  +DFKT V  TI
Sbjct: 371  HMTGIDLTETRRSRQHKRAATMFMQIYHPKKKTWRTLVTRSPFHYPIDFKTAVTSTI 427


>emb|CBI37083.3| unnamed protein product [Vitis vinifera]
          Length = 377

 Score =  478 bits (1229), Expect = e-132
 Identities = 238/369 (64%), Positives = 277/369 (75%), Gaps = 3/369 (0%)
 Frame = -2

Query: 1318 SRLKPTCKSWKHFFSSKPLNFSLRQKFH-SHLLCLFPQDPSISPPFLFDPKNLAWRPIPP 1142
            +RLK   KSWK F SSK L  SLRQ  H S LLCLFPQDP+I+ PFLFDPK LAW P+PP
Sbjct: 8    ARLKSISKSWKLFLSSKTL-ISLRQNNHQSQLLCLFPQDPAIANPFLFDPKTLAWCPLPP 66

Query: 1141 MPCNSQLYGLTNFISIAFNYHLYVIGGSLFDARSFPMDRPSASASIYRFDMFTNHWVCLS 962
            +P N  +YGL NF SI+   +LYV+GGSLFD RSFP+DRPS S+S++RF+  T  W  LS
Sbjct: 67   LPINPYVYGLCNFTSISLGPNLYVLGGSLFDTRSFPLDRPSPSSSVFRFNFLTYSWELLS 126

Query: 961  PMLSARGSFXXXXXXXXXXXXXXG--SRHAMFGAAGSRMSSVERYDVDKNEWVEMDGLPR 788
            PMLS RGSF              G  SRH MFGAAGSRMSSVERYDV+K+EWV +DGLPR
Sbjct: 127  PMLSPRGSFACVALPNSDQIIVAGGGSRHTMFGAAGSRMSSVERYDVEKDEWVSLDGLPR 186

Query: 787  FRAGCVGFLIGNGEEMEFWVMGGYGESRTVSGVFPVDEYYRDGVVLELKSGGKWREIENM 608
            FRAGCVGFLIGNGEE EFWVMGGYGESRTVSGVFPVDEYYRD VV+ELK GGKWRE+ +M
Sbjct: 187  FRAGCVGFLIGNGEEKEFWVMGGYGESRTVSGVFPVDEYYRDAVVMELKKGGKWRELGDM 246

Query: 607  WEEGERRRLGNVVVLDGEDGEEPGIFMLDGADIFRYDISSNRWQKESSVPRTALVDFCFG 428
            WE GER RLG +VV+D E G  P IFMLDG++IFRY ++SNRW KES VPR A  D  FG
Sbjct: 247  WEAGERMRLGKIVVVDDEVGGAPAIFMLDGSEIFRYCMTSNRWLKESCVPRKASQDMSFG 306

Query: 427  FAALDGELHVLSPLYTIDSKENRRPRLQKKGATILIQIYHPKKRAWRSMTTKPPSNCSLD 248
            F  LDGEL+V++ +  ID  E RR R  K+ AT+ +QIYHPKK+ WR++ T+ P +  +D
Sbjct: 307  FVVLDGELYVITHMTGIDLTETRRSRQHKRAATMFMQIYHPKKKTWRTLVTRSPFHYPID 366

Query: 247  FKTVVMCTI 221
            FKT V  TI
Sbjct: 367  FKTAVTSTI 375


>ref|XP_002300788.1| predicted protein [Populus trichocarpa] gi|222842514|gb|EEE80061.1|
            predicted protein [Populus trichocarpa]
          Length = 414

 Score =  476 bits (1226), Expect = e-132
 Identities = 239/415 (57%), Positives = 297/415 (71%), Gaps = 6/415 (1%)
 Frame = -2

Query: 1441 MTSVCSSSNSQVETLALTTLIPNLPNDXXXXXXXXXXXSHHSRLKPTCKSWKHFFSSKPL 1262
            M +  SSS SQ++     TLIP LPND           SHH+R+KPTCKSW  F SS   
Sbjct: 1    METYASSSLSQLQINETQTLIPGLPNDIASLILSLIPYSHHARVKPTCKSWHTFLSSTEA 60

Query: 1261 NFSLRQ--KFHSHLLCLFPQDPSISPPFLFDPKNLAWRPIPPMPCNSQLYGLTNFISIAF 1088
             FSLR+  +  +HLL +FPQDPSIS P+LFDP+NLAWRP+P MPCN  +YGL NF SI+ 
Sbjct: 61   LFSLRRHPRRSNHLLIIFPQDPSISAPYLFDPQNLAWRPLPRMPCNPNVYGLCNFTSISM 120

Query: 1087 NYHLYVIGGSLFDARSFPMDRPSASASIYRFDMFTNHWVCLSPMLSARGSFXXXXXXXXX 908
              +LYV+GGSLFD RSFPMDRPS ++S++RF+     W  L PMLS RGSF         
Sbjct: 121  GPNLYVLGGSLFDTRSFPMDRPSPTSSVFRFNFVDFLWEKLCPMLSPRGSFACAAVPDSG 180

Query: 907  XXXXXG--SRHAMFGAAGSRMSSVERYDVDKNEWVEMDGLPRFRAGCVGFLIGNGEEMEF 734
                 G  SRHA FGAAGSR+SSVERYDV K EWV ++GLPR+RAGCVGFL G+G+E EF
Sbjct: 181  QIIVAGGGSRHAWFGAAGSRISSVERYDVGKGEWVAIEGLPRYRAGCVGFLSGDGDEREF 240

Query: 733  WVMGGYGESRTVSGVFPVDEYYRDGVVLELKSG--GKWREIENMWEEGERRRLGNVVVLD 560
            WVMGGYGESRT+SG+FPVDEYY+D VV++LK    GKWRE+ +MW +  R RLG +VV++
Sbjct: 241  WVMGGYGESRTISGIFPVDEYYKDAVVMDLKKSGCGKWREVGDMWSDAGRGRLGKIVVVE 300

Query: 559  GEDGEEPGIFMLDGADIFRYDISSNRWQKESSVPRTALVDFCFGFAALDGELHVLSPLYT 380
             ++G  P +FMLD  +IFRYD++SN WQ+ES VPR A  +   GFA LDGELHV++ L  
Sbjct: 301  EDEG-RPAVFMLDENEIFRYDMASNSWQRESIVPRKAPHNSSCGFAVLDGELHVMTFLRG 359

Query: 379  IDSKENRRPRLQKKGATILIQIYHPKKRAWRSMTTKPPSNCSLDFKTVVMCTIRI 215
             D  + +R R QK+G T+ +QIYHPKK+ WRS+ T+PP   SLDFKT +MCTIR+
Sbjct: 360  DDLVKTQRSRQQKRGGTLFVQIYHPKKKTWRSLVTRPPFCHSLDFKTAIMCTIRL 414


>ref|XP_002307636.1| predicted protein [Populus trichocarpa] gi|222857085|gb|EEE94632.1|
            predicted protein [Populus trichocarpa]
          Length = 422

 Score =  474 bits (1219), Expect = e-131
 Identities = 236/418 (56%), Positives = 292/418 (69%), Gaps = 14/418 (3%)
 Frame = -2

Query: 1426 SSSNSQVETLALTTLIPNLPNDXXXXXXXXXXXSHHSRLKPTCKSWKHFFSSKPLNFSLR 1247
            +SS+SQ++     TLIP +PND           SHHSR+KPTCKSW  F SS    F LR
Sbjct: 5    ASSSSQLQINETQTLIPGIPNDIASQILSMIPYSHHSRIKPTCKSWHIFLSSTKTLFLLR 64

Query: 1246 QKFH--SHLLCLFPQDPSISPPFLFDPKNLAWRPIPPMPCNSQLYGLTNFISIAFNYHLY 1073
                  +HLL +FPQDP IS P+LFDP+NLAWRP+PPMPCN  +YGL NF S++   +LY
Sbjct: 65   HNLRHSNHLLIIFPQDPFISLPYLFDPQNLAWRPLPPMPCNPHVYGLCNFTSVSMGPNLY 124

Query: 1072 VIGGSLFDARSFPMDRPSASASIYRFDMFTNHWVCLSPMLSARGSFXXXXXXXXXXXXXX 893
            V+GGSLFD RS+P+DRPS ++S++RF+     W  L PM+S RGSF              
Sbjct: 125  VLGGSLFDTRSYPIDRPSPTSSVFRFNFVDFLWEKLCPMISPRGSFACVAVPDWDQIIVA 184

Query: 892  G--SRHAMFGAAGSRMSSVERYDVDKNEWVEMDGLPRFRAGCVGFLIGNGEEMEFWVMGG 719
            G  SRH  FGAAGSR+SSVERYDV K+EWV +DGLPR+RAGC GFL GNGEE EFWV+GG
Sbjct: 185  GGGSRHTWFGAAGSRISSVERYDVGKDEWVAIDGLPRYRAGCAGFLSGNGEEKEFWVVGG 244

Query: 718  YGESRTVSGVFPVDEYYRDGVVLELKSG--GKWREIENMWEEGERRRLGNVVVLDGEDGE 545
            YGESRT+SG+FPVDEYY+D VV++L+    GKWRE+ +MW    R RLG +VV++ E   
Sbjct: 245  YGESRTISGIFPVDEYYKDAVVMDLEKNGCGKWREVGDMWGVAWRGRLGKIVVVEEEAEA 304

Query: 544  E--------PGIFMLDGADIFRYDISSNRWQKESSVPRTALVDFCFGFAALDGELHVLSP 389
            E        P +FMLDG +IFRYD++SN WQKESSVPR A  +  FGF  LDGELHV++P
Sbjct: 305  EGLGVKQGRPVVFMLDGDEIFRYDMASNSWQKESSVPRKAPYNSSFGFVVLDGELHVMTP 364

Query: 388  LYTIDSKENRRPRLQKKGATILIQIYHPKKRAWRSMTTKPPSNCSLDFKTVVMCTIRI 215
            +   D  E RR R QK+G T+L+QIYHPK + WRS+ TKPP    LDFKT +MCTI++
Sbjct: 365  VQGGDLMETRRSRQQKRGGTLLVQIYHPKMKTWRSLVTKPPFYYPLDFKTAIMCTIQL 422


>ref|XP_002521014.1| conserved hypothetical protein [Ricinus communis]
            gi|223539851|gb|EEF41431.1| conserved hypothetical
            protein [Ricinus communis]
          Length = 428

 Score =  456 bits (1172), Expect = e-126
 Identities = 238/412 (57%), Positives = 286/412 (69%), Gaps = 15/412 (3%)
 Frame = -2

Query: 1405 ETLALTTLIPNLPNDXXXXXXXXXXXSHHSRLKPTCKSWKHFFSSKPLNFSLRQKFHS-- 1232
            + L+ +TLIP LPND           SHHSR+K T KSW  F SSK L  SLRQ   +  
Sbjct: 19   DELSTSTLIPGLPNDVAAQILSTVPYSHHSRIKQTSKSWYTFLSSKTL-VSLRQHLLNLN 77

Query: 1231 HLLCLFPQDPSISPPFLFDPKNLAWRPIPPMPCNSQLYGLTNFISIAFNYHLYVIGGSLF 1052
            HLL +FPQDPSIS P+LFDPKNLAW+P+ PMPCN  +YGL NF SI+    LYV+GGS F
Sbjct: 78   HLLVIFPQDPSISSPYLFDPKNLAWKPLLPMPCNPHVYGLCNFTSISLGPTLYVLGGSHF 137

Query: 1051 DARSFPMDRPSASASIYRFDMFTNHWVCLSPMLSARGSF--XXXXXXXXXXXXXXGSRHA 878
            D RSFPMDRP+ S+S++R++   + W  LSPMLS RGSF                GSRH 
Sbjct: 138  DTRSFPMDRPTPSSSVFRYNFIDSRWDQLSPMLSPRGSFACIAVPNSGKIIVAGGGSRHT 197

Query: 877  MFGAAGSRMSSVERYDVDKNEWVEMDGLPRFRAGCVGFLIGNG-------EEMEFWVMGG 719
            +FGAAGSRMSSVE YDV  ++W+ MDGLP +RAGCVGF++GN        EE E WVMGG
Sbjct: 198  LFGAAGSRMSSVEMYDVLADKWMRMDGLPGYRAGCVGFMVGNNNGEEEEEEEKELWVMGG 257

Query: 718  YGESRTVSGVFPVDEYYRDGVVLEL-KSGG-KWREIENMWEEGERRRLGNVVVLD--GED 551
            YGESRT+SGVFPVDEYY+D VV+ L K+GG KWREI +MW +GER RLG V+V+D  G D
Sbjct: 258  YGESRTISGVFPVDEYYKDAVVMNLNKNGGSKWREIGDMWHDGERARLGKVIVVDDYGSD 317

Query: 550  GEEPGIFMLDGADIFRYDISSNRWQKESSVPRTALVDFCFGFAALDGELHVLSPLYTIDS 371
               P +FMLD  +IFRYD  SN WQKESSVPR A  +   GF  LDGEL+V++ L   DS
Sbjct: 318  -HRPAVFMLDNNEIFRYDRVSNSWQKESSVPRKAPCNSSCGFVVLDGELYVMALLKGADS 376

Query: 370  KENRRPRLQKKGATILIQIYHPKKRAWRSMTTKPPSNCSLDFKTVVMCTIRI 215
             E RR R QK+   + IQIYHP+K+ WRS+ TKPP +C LDF + VMCTIR+
Sbjct: 377  TETRRSRQQKRAGALFIQIYHPRKKTWRSLVTKPPFHCPLDFNSAVMCTIRL 428


Top